Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.6e-130 469.5 257 100.0
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 1.3e-116 423.3 257 90.7
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 9.8e-96 354.0 262 77.9
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 4.9e-95 351.7 261 80.8
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 7.0e-94 347.8 264 73.1
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 2.0e-93 346.3 258 73.6
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 6.8e-89 331.3 270 68.5
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 2.4e-86 322.8 270 66.7
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 2.4e-86 322.8 270 66.7
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 1.2e-85 320.5 269 66.5
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 1.7e-84 316.6 270 66.3
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 3.5e-77 292.4 278 64.4
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 2.3e-60 236.5 178 68.5
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 1.1e-41 174.5 180 52.8
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 1.8e-41 173.7 224 47.3
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 4.0e-41 172.6 182 52.7
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 9.0e-41 171.4 185 53.0
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.3e-39 167.5 152 57.2
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.4e-38 164.1 174 51.1
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.9e-38 163.7 222 45.5
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 2.5e-38 163.3 174 50.6
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 1.6e-37 160.6 141 58.9
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 3.5e-37 159.5 195 49.2
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 7.9e-37 158.3 176 53.4
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 1.3e-36 157.5 244 41.0
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 1.8e-36 157.1 156 54.5
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 1.8e-36 157.1 194 49.5
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 3.0e-36 156.4 183 49.2
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 6.7e-36 155.2 178 47.2
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 4.3e-35 152.5 163 51.5
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 4.3e-35 152.5 178 47.8
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 5.7e-35 152.1 180 50.0
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.3e-34 151.0 190 47.9
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 4.8e-34 149.1 193 48.7
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 8.2e-34 148.3 158 55.1
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 1.4e-33 147.5 177 49.7
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 1.8e-33 147.1 184 46.2
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 3.1e-33 146.4 187 46.0
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 5.3e-33 145.6 205 44.9
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 6.9e-33 145.2 258 42.6
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 6.9e-33 145.2 191 47.1
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.2e-32 144.4 153 51.6
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 1.5e-32 144.1 156 53.2
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 2.6e-32 143.3 160 51.9
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 3.4e-32 142.9 146 54.1
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 4.5e-32 142.5 180 45.6
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 5.9e-32 142.1 240 38.8
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 5.9e-32 142.1 159 48.4
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.0e-31 141.4 249 37.8
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 1.3e-31 141.0 177 46.3
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 1.7e-31 140.6 160 50.0
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 2.2e-31 140.2 165 48.5
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 2.9e-31 139.8 216 42.1
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 3.8e-31 139.4 185 42.2
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 3.8e-31 139.4 243 37.9
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 8.5e-31 138.3 167 48.5
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 1.4e-30 137.5 157 49.0
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 1.9e-30 137.1 134 52.2
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 1.9e-30 137.1 232 41.4
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 2.5e-30 136.7 167 42.5
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 2.5e-30 136.7 224 40.6
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 3.2e-30 136.3 178 44.4
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 1.2e-29 134.4 152 49.3
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 1.6e-29 134.0 173 44.5
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 3.6e-29 132.9 158 44.9
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 4.6e-29 132.5 146 52.1
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 6.1e-29 132.1 144 47.9
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 7.9e-29 131.7 179 43.6
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 1.0e-28 131.3 153 47.1
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 2.3e-28 130.2 180 43.9
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 5.1e-28 129.0 158 47.5
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 1.5e-27 127.5 158 46.8
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 3.3e-27 126.3 176 42.0
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.4e-25 120.9 134 44.0
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 3.1e-25 119.8 153 43.8
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 2.0e-24 117.1 156 37.8
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 2.6e-24 116.7 178 39.3
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 4.5e-24 115.9 164 39.6
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 4.5e-24 115.9 164 39.6
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 5.9e-24 115.5 164 39.6
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 5.9e-24 115.5 155 41.3
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 7.7e-24 115.2 153 39.9
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 1.0e-23 114.8 229 32.8
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 1.3e-23 114.4 158 38.6
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 2.2e-23 113.6 152 39.5
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 2.9e-23 113.2 157 38.9
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 2.9e-23 113.2 152 37.5
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 6.5e-23 112.1 155 38.1
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 8.5e-23 111.7 190 33.7
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 1.4e-22 110.9 163 39.3
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.4e-22 110.9 151 39.1
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 1.9e-22 110.5 117 50.4
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 1.9e-22 110.5 167 39.5
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 5.5e-22 109.0 155 38.1
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 7.2e-22 108.6 179 35.8
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 9.4e-22 108.2 134 41.8
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 1.6e-21 107.5 186 35.5
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.7e-21 106.7 161 36.0
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 3.6e-21 106.3 253 35.6
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 4.6e-21 105.9 158 36.1
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 4.6e-21 105.9 152 36.8
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 6.1e-21 105.5 155 39.4
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 7.9e-21 105.1 130 39.2
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 2.3e-20 103.6 130 39.2
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 2.3e-20 103.6 151 39.1
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 3.0e-20 103.2 157 34.4
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 3.0e-20 103.2 168 33.9
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 3.9e-20 102.8 137 38.7
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 5.1e-20 102.4 164 36.0
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 6.7e-20 102.1 133 40.6
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 8.8e-20 101.7 168 33.3
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 8.8e-20 101.7 167 33.5
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 8.8e-20 101.7 162 35.8
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 1.1e-19 101.3 97 58.8
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 1.1e-19 101.3 152 34.9
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 2.0e-19 100.5 167 32.3
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 2.0e-19 100.5 167 32.3
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 2.0e-19 100.5 144 38.2
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 7.4e-19 98.6 145 37.2
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 7.4e-19 98.6 145 37.2
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 1.7e-18 97.4 144 37.5
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 2.2e-18 97.1 152 36.2
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 2.8e-18 96.7 139 36.7
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 3.7e-18 96.3 144 35.4
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 1.1e-17 94.7 145 35.2
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 4.1e-17 92.8 173 35.3
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 6.9e-17 92.0 169 33.7
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 6.9e-17 92.0 169 33.7
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 6.9e-17 92.0 169 33.7
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 9.1e-17 91.7 188 32.4
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 9.1e-17 91.7 190 32.6
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 9.1e-17 91.7 190 32.6
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 2.6e-16 90.1 140 36.4
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 3.4e-16 89.7 161 32.3
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 7.7e-16 88.6 162 32.1
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 7.7e-16 88.6 143 35.0
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 1.0e-15 88.2 140 35.0
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.3e-15 87.8 186 33.3
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 3.8e-15 86.3 170 28.8
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 3.8e-15 86.3 179 31.8
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 8.5e-15 85.1 128 37.5
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.9e-14 84.0 92 50.0
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 2.5e-14 83.6 119 39.5
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 2.5e-14 83.6 157 33.8
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 7.2e-14 82.0 147 34.7
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 2.1e-13 80.5 95 40.0
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 4.7e-13 79.3 88 40.9
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 4.7e-13 79.3 150 31.3
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 1.0e-12 78.2 95 40.0
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 2.3e-12 77.0 108 38.9
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 2.0e-11 73.9 77 41.6
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 7.4e-11 72.0 81 50.6
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 7.4e-11 72.0 164 26.8
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.7e-07 60.8 58 46.6
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 2.2e-07 60.5 89 41.6
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 8.5e-07 58.5 115 30.4
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 2.5e-06 57.0 121 27.3
Pp3c6_3400 Physcomitrium patens HOM05D005423 ORTHO05D006223 9.4e-06 55.1 100 28.0


User provided reference genes

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