Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 0.0e+00 2134.8 1228 100.0
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 0.0e+00 1936.0 1228 89.9
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 0.0e+00 1718.7 1233 76.8
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 0.0e+00 1664.8 1243 81.3
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 0.0e+00 1605.9 1242 74.4
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 0.0e+00 1567.7 1230 72.1
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 0.0e+00 1477.2 1238 69.2
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 0.0e+00 1321.2 1237 62.1
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 0.0e+00 1290.8 1232 63.4
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 0.0e+00 1289.6 1232 63.3
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 0.0e+00 1288.9 1232 63.3
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 0.0e+00 1200.3 1250 59.6
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 2.3e-288 996.1 965 57.0
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 8.8e-235 818.1 1236 47.4
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.7e-222 777.3 1205 43.7
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 5.0e-222 775.8 1051 42.8
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 4.8e-217 759.2 1078 46.0
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 8.2e-217 758.4 1239 44.9
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 1.8e-216 757.3 1162 46.1
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 5.3e-216 755.7 1237 47.4
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 7.5e-210 735.3 1242 41.9
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 4.8e-209 732.6 1237 39.3
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 7.0e-200 702.2 1234 44.6
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 1.1e-197 694.9 1015 44.4
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 1.9e-197 694.1 1009 45.4
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 2.4e-192 677.2 1227 39.7
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.2e-192 676.8 1232 42.2
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 4.1e-192 676.4 963 44.7
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 7.0e-192 675.6 1001 40.5
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 9.2e-192 675.2 1021 41.7
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.9e-185 653.7 1164 42.8
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 1.1e-184 651.7 1227 42.5
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 1.4e-184 651.4 1181 43.9
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 4.6e-183 646.4 1069 39.9
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 6.6e-182 642.5 955 44.0
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.5e-178 631.3 1243 40.9
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 2.9e-177 627.1 1175 43.1
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 1.6e-175 621.3 1026 40.9
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 1.9e-173 614.4 1248 40.9
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 1.2e-170 605.1 1080 43.4
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 4.4e-170 603.2 1164 41.8
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 1.3e-169 601.7 1164 42.1
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 1.7e-169 601.3 1191 43.2
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 4.6e-167 593.2 1021 39.1
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 7.8e-167 592.4 1182 39.8
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 3.9e-166 590.1 1207 37.8
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 6.6e-166 589.3 1167 42.3
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 1.5e-165 588.2 1244 39.1
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 7.6e-162 575.9 1196 40.3
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 3.8e-161 573.5 1031 39.2
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 4.2e-160 570.1 830 37.6
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 6.0e-159 566.2 1166 40.8
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 7.8e-159 565.8 1241 35.3
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 1.3e-158 565.1 1014 39.9
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 1.3e-158 565.1 1242 36.4
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 2.8e-156 557.4 1022 39.1
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 1.4e-155 555.1 1092 43.0
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 1.8e-155 554.7 1090 33.8
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 3.1e-155 553.9 955 41.6
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 7.6e-154 549.3 1022 39.2
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 4.3e-149 533.5 1207 37.1
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 1.3e-145 521.9 1201 38.7
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 7.1e-144 516.2 1217 37.5
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 1.8e-142 511.5 857 40.1
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 9.6e-141 505.8 754 44.3
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 1.3e-140 505.4 962 37.9
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 1.4e-139 501.9 1244 33.4
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 3.1e-139 500.7 982 38.2
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 5.3e-139 500.0 1077 41.9
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 1.3e-137 495.4 769 35.6
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 1.7e-137 495.0 769 35.9
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 2.2e-137 494.6 830 35.2
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 2.2e-137 494.6 1158 33.0
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 2.9e-137 494.2 767 36.2
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 3.0e-134 484.2 768 35.4
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 3.9e-134 483.8 646 48.0
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 1.4e-131 475.3 697 44.3
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 3.1e-131 474.2 1078 31.4
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 1.4e-126 458.8 1151 32.1
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 4.8e-124 450.3 754 36.7
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 9.7e-117 426.0 1059 34.8
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 1.6e-111 408.7 725 40.6
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 3.6e-111 407.5 874 30.8
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 7.0e-107 393.3 748 39.2
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.1e-96 359.4 772 37.7
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 3.0e-94 351.3 637 30.3
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 5.0e-89 334.0 959 31.1
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 9.5e-88 329.7 371 44.7
Phvul.006G046500 Phaseolus vulgaris HOM05D006569 ORTHO05D007515 2.2e-84 318.5 778 37.8
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 3.5e-82 311.2 910 26.6
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.7e-74 285.0 616 40.7
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 8.6e-65 253.4 345 53.6
Glyma.18G108202 Glycine max HOM05D006569 ORTHO05D007515 7.5e-61 240.4 403 51.4
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.2e-55 223.0 345 49.9
RcHm_v2.0_Chr2g0167571 Rosa chinensis HOM05D006569 ORTHO05D007515 3.6e-47 194.9 194 50.0
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 6.9e-46 190.7 968 26.8
RcHm_v2.0_Chr2g0167581 Rosa chinensis HOM05D006569 ORTHO05D007515 1.7e-44 186.0 223 43.0
FAN09G1632 Fragaria x ananassa HOM05D006569 ORTHO05D007515 6.0e-42 177.6 292 36.0
Thecc.04G085700 Theobroma cacao HOM05D006569 ORTHO05D007515 6.6e-41 174.1 209 45.5
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 3.3e-40 171.8 514 26.7
HPP92_012677 Vanilla planifolia HOM05D006569 ORTHO05D007515 7.3e-40 170.6 437 29.1
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 4.6e-34 151.4 411 28.2
Os03g0168400 Oryza sativa ssp. japonica HOM05D006569 ORTHO05D007515 3.0e-33 148.7 228 35.5
FvH4_6g48880 Fragaria vesca HOM05D006569 ORTHO05D007515 6.4e-28 131.0 181 38.7
Thecc.04G085800 Theobroma cacao HOM05D006569 ORTHO05D007515 1.1e-24 120.2 356 29.2
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.9e-24 119.4 248 31.5
FvH4_6g47954 Fragaria vesca HOM05D006569 ORTHO05D007515 1.3e-23 116.7 190 40.5
FAN14G0320 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.6e-23 116.3 190 40.5
ATR0974G001 Amborella trichopoda HOM05D006569 ORTHO05D007515 1.2e-18 100.1 219 30.6
Medtr3g052970 Medicago truncatula HOM05D006569 ORTHO05D007515 1.5e-16 93.2 112 43.8
SEGI_17455 Sequoiadendron giganteum HOM05D006569 ORTHO05D007515 1.3e-15 90.1 515 31.8
CAN.G354.69 Capsicum annuum HOM05D007390 ORTHO05D009114 1.1e-11 77.0 350 24.9
HanXRQChr05g0134551 Helianthus annuus HOM05D006569 ORTHO05D007515 1.9e-11 76.3 100 43.0
A03p20550 Brassica napus HOM05D006740 ORTHO05D008571 3.2e-11 75.5 309 23.0
BraA03t11298Z Brassica rapa HOM05D006740 ORTHO05D008571 3.2e-11 75.5 309 23.0
Sp4g19550 Schrenkiella parvula HOM05D006740 ORTHO05D008571 2.1e-10 72.8 274 23.4
FAN05G1232 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.7e-10 72.4 116 36.2
Duzib093G0470 Durio zibethinus HOM05D008684 ORTHO05D010796 7.9e-10 70.9 406 21.2
Duzib168G0340 Durio zibethinus HOM05D000001 ORTHO05D013582 2.3e-09 69.3 466 20.8
Glyma.08G319450 Glycine max HOM05D006569 ORTHO05D007515 2.3e-09 69.3 91 37.4
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 3.9e-09 68.6 558 20.1
Sed0002743 Sechium edule HOM05D000104 ORTHO05D009920 3.9e-09 68.6 342 23.1
BcaB01g04883 Brassica carinata HOM05D007340 ORTHO05D008979 8.8e-09 67.4 206 25.7
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 1.1e-08 67.0 388 22.4
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 1.1e-08 67.0 390 22.3
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 1.1e-08 67.0 390 22.3
SEGI_26115 Sequoiadendron giganteum HOM05D006819 ORTHO05D008763 1.5e-08 66.6 190 29.5
Thecc.02G332900 Theobroma cacao HOM05D005622 ORTHO05D002854 2.0e-08 66.2 320 21.2
HanXRQChr16g0524351 Helianthus annuus HOM05D006569 ORTHO05D007515 2.5e-08 65.9 83 41.0
Sabra16G0092400 Salix brachista HOM05D005622 ORTHO05D002854 3.3e-08 65.5 367 21.3
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 7.4e-08 64.3 209 23.9
SHI08443 Sapria himalayana HOM05D005622 ORTHO05D002854 7.4e-08 64.3 322 19.9
Migut.D01063 Erythranthe guttata HOM05D000891 ORTHO05D000761 1.7e-07 63.2 280 22.1
AL5G43620 Arabidopsis lyrata HOM05D003039 ORTHO05D008410 2.2e-07 62.8 240 22.5
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 2.2e-07 62.8 172 27.3
Duzib235G1205 Durio zibethinus HOM05D007956 ORTHO05D010152 3.7e-07 62.0 443 20.3
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 4.8e-07 61.6 249 22.9
TAR629G1135 Trochodendron aralioides HOM05D005622 ORTHO05D002854 4.8e-07 61.6 370 22.2
Potri.016G086100 Populus trichocarpa HOM05D005622 ORTHO05D002854 6.3e-07 61.2 347 21.6
CDE05G0555 Ceratophyllum demersum HOM05D007830 ORTHO05D009947 8.2e-07 60.8 266 24.8
Oeu004580.1 Olea europaea HOM05D005622 ORTHO05D002854 1.1e-06 60.5 348 22.7
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 1.1e-06 60.5 230 22.6
Cpa.g.sc108.57 Carica papaya HOM05D007358 ORTHO05D009117 1.4e-06 60.1 151 27.8
Prupe.3G083000 Prunus persica HOM05D000891 ORTHO05D000761 1.8e-06 59.7 202 22.8
MD16G1095500 Malus domestica HOM05D000037 ORTHO05D000648 4.1e-06 58.5 565 22.5
C08p36220 Brassica napus HOM05D003039 ORTHO05D008410 9.1e-06 57.4 340 21.5


User provided reference genes

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