Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G14990 Arabidopsis thaliana HOM05D007562 ORTHO05D009721 3.5e-303 1044.3 574 100.0
AL6G25790 Arabidopsis lyrata HOM05D007562 ORTHO05D009721 2.2e-260 902.1 573 85.7
Carub.0006s1315 Capsella rubella HOM05D007562 ORTHO05D009721 1.4e-251 872.8 576 82.6
Sp6g29050 Schrenkiella parvula HOM05D007562 ORTHO05D009721 1.6e-242 842.8 574 81.2
Thhalv10015291m.g Eutrema salsugineum HOM05D007562 ORTHO05D009721 2.8e-236 822.0 582 80.4
CARHR198320 Cardamine hirsuta HOM05D007562 ORTHO05D009721 5.7e-229 797.7 580 79.3
C02p07440 Brassica napus HOM05D007562 ORTHO05D009721 6.6e-201 704.5 560 71.2
BraA02t05255Z Brassica rapa HOM05D007562 ORTHO05D009721 1.7e-196 689.9 610 66.6
BolC2t06675H Brassica oleracea HOM05D000286 ORTHO05D009721 1.9e-195 686.4 569 69.8
A02p02820 Brassica napus HOM05D007562 ORTHO05D009721 1.2e-194 683.7 610 65.4
BcaC03g13438 Brassica carinata HOM05D007562 ORTHO05D009721 6.6e-193 677.9 545 70.8
Aa31LG11G14520 Aethionema arabicum HOM05D007562 ORTHO05D009721 1.9e-147 526.9 626 56.9
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 1.4e-73 281.6 522 40.4
TWI63G1657 Tripterygium wilfordii HOM05D007562 ORTHO05D009721 6.6e-68 262.7 539 37.3
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 7.3e-67 259.2 568 37.9
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 1.3e-66 258.5 590 37.3
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 1.5e-64 251.5 647 34.6
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 1.7e-63 248.1 576 34.5
Potri.010G222200 Populus trichocarpa HOM05D007562 ORTHO05D009721 1.7e-63 248.1 517 37.5
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 2.9e-63 247.3 574 36.1
Haze_16895 Corylus avellana HOM05D007562 ORTHO05D009721 7.9e-61 239.2 281 49.8
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 1.0e-60 238.8 265 50.9
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 3.7e-58 230.3 514 34.8
COL.COLO4_23667 Corchorus olitorius HOM05D007562 ORTHO05D009721 2.4e-57 227.6 508 36.0
MD07G1174900 Malus domestica HOM05D007562 ORTHO05D009721 2.6e-56 224.2 613 32.0
Manes.07G100520 Manihot esculenta HOM05D007562 ORTHO05D009721 4.5e-56 223.4 581 31.8
Lalb_Chr19g0129691 Lupinus albus HOM05D007562 ORTHO05D009721 2.2e-55 221.1 579 35.1
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.9e-54 218.0 541 35.1
Lj2g0025537 Lotus japonicus HOM05D007562 ORTHO05D009721 5.5e-54 216.5 597 32.5
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 9.3e-54 215.7 513 33.9
Eucgr.G02827 Eucalyptus grandis HOM05D007562 ORTHO05D009721 3.5e-53 213.8 631 30.6
GSVIVG01016281001 Vitis vinifera HOM05D007562 ORTHO05D009721 3.5e-53 213.8 504 36.1
Cpa.g.sc53.80 Carica papaya HOM05D007562 ORTHO05D009721 4.6e-53 213.4 309 45.0
Ciclev10033649m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.3e-52 211.1 576 32.8
Ciclev10033636m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.5e-51 208.4 530 34.9
Gohir.D06G174900 Gossypium hirsutum HOM05D007562 ORTHO05D009721 1.5e-51 208.4 499 35.1
Gorai.010G205300 Gossypium raimondii HOM05D007562 ORTHO05D009721 9.6e-51 205.7 499 34.9
FAN10G0414 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.6e-50 204.9 489 35.0
Gohir.A06G167500 Gossypium hirsutum HOM05D007562 ORTHO05D009721 1.6e-50 204.9 515 34.0
ClCG05G020990 Citrullus lanatus HOM05D007562 ORTHO05D009721 2.8e-50 204.1 605 32.2
Ciclev10033468m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.1e-49 202.2 555 33.9
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 1.4e-49 201.8 491 37.1
Ca_04680_v3 Cicer arietinum L. HOM05D007562 ORTHO05D009721 2.4e-49 201.1 571 32.2
FvH4_7g19620 Fragaria vesca HOM05D007562 ORTHO05D009721 1.2e-48 198.7 494 34.4
MELO3C012431.2 Cucumis melo HOM05D007562 ORTHO05D009721 2.0e-48 198.0 501 32.1
Ciclev10033616m.g Citrus clementina HOM05D007562 ORTHO05D009721 4.5e-48 196.8 559 32.7
FAN01G2123 Fragaria x ananassa HOM05D007562 ORTHO05D009721 7.6e-48 196.1 501 35.3
FAN03G1079 Fragaria x ananassa HOM05D007562 ORTHO05D009721 4.9e-47 193.4 496 34.5
VMungo0464G0183 Vigna mungo HOM05D007562 ORTHO05D009721 4.9e-47 193.4 581 31.7
Glyma.16G154800 Glycine max HOM05D007562 ORTHO05D009721 1.9e-46 191.4 627 31.6
arahy.Tifrunner.gnm1.ann1.264L58 Arachis hypogaea HOM05D007562 ORTHO05D009721 7.1e-46 189.5 419 35.1
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 7.1e-46 189.5 567 32.1
Phvul.004G082400 Phaseolus vulgaris HOM05D007562 ORTHO05D009721 1.2e-45 188.7 617 31.1
CsaV3_5G036330 Cucumis sativus L. HOM05D007562 ORTHO05D009721 1.6e-45 188.3 541 30.1
TPR.G20136 Trifolium pratense HOM05D007562 ORTHO05D009721 3.5e-45 187.2 580 30.9
Medtr6g060178 Medicago truncatula HOM05D007562 ORTHO05D009721 1.3e-44 185.3 604 30.1
CSS0037048 Camellia sinensis var. sinensis HOM05D007562 ORTHO05D009721 3.3e-43 180.6 583 29.8
Ciclev10033702m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.4e-41 174.5 300 40.0
PGR142G4136 Punica granatum HOM05D007562 ORTHO05D009721 9.0e-41 172.6 293 39.9
Sed0018277 Sechium edule HOM05D007562 ORTHO05D009721 2.6e-40 171.0 304 38.2
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 3.4e-40 170.6 548 29.7
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 2.9e-39 167.5 685 26.9
Cc09_g02120 Coffea canephora HOM05D007562 ORTHO05D009721 9.3e-38 162.5 505 31.1
Oeu043937.1 Olea europaea HOM05D007562 ORTHO05D009721 1.1e-35 155.6 287 37.3
Nn4g24611 Nelumbo nucifera HOM05D007562 ORTHO05D009721 9.7e-35 152.5 305 38.0
Peaxi162Scf00072g00627 Petunia axillaris HOM05D007562 ORTHO05D009721 9.7e-35 152.5 482 29.7
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 1.2e-32 145.6 318 33.3
Solyc04g049440.2 Solanum lycopersicum HOM05D007562 ORTHO05D009721 2.0e-32 144.8 517 28.6
Nitab4.5_0010206g0020 Nicotiana tabacum HOM05D007562 ORTHO05D009721 4.5e-32 143.7 587 29.5
Nitab4.5_0000575g0170 Nicotiana tabacum HOM05D007562 ORTHO05D009721 5.9e-32 143.3 489 29.2
PSO063G7346 Papaver somniferum HOM05D007562 ORTHO05D009721 2.3e-28 131.3 353 33.7
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 5.7e-27 126.7 447 28.2
PSO339G1903 Papaver somniferum HOM05D007562 ORTHO05D009721 8.2e-26 122.9 353 32.6
Cc09_g02140 Coffea canephora HOM05D007562 ORTHO05D009721 5.3e-25 120.2 211 39.3
DCAR_004783 Daucus carota HOM05D007562 ORTHO05D009721 9.1e-25 119.4 574 25.4
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 1.6e-21 108.6 355 29.3
CDE08G0023 Ceratophyllum demersum HOM05D007562 ORTHO05D009721 7.4e-19 99.8 338 27.5
SGA_v2.0_scaffold71G24023 Striga asiatica HOM05D007562 ORTHO05D009721 4.8e-18 97.1 547 26.1
Migut.F01779 Erythranthe guttata HOM05D007562 ORTHO05D009721 1.2e-16 92.4 248 32.3
SalBow3G0440 Salvia bowleyana HOM05D007562 ORTHO05D009721 6.5e-15 86.7 197 34.0
FAN06G4675 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.6e-13 82.0 382 24.3
ECA233G5285 Erigeron canadensis HOM05D007562 ORTHO05D009721 5.2e-12 77.0 225 31.6
Zm00001eb077110 Zea mays HOM05D007562 ORTHO05D009721 8.2e-10 69.7 274 25.9
Os04g0521600 Oryza sativa ssp. japonica HOM05D007562 ORTHO05D004736 2.0e-08 65.1 165 34.5
Cpa.g.sc53.79 Carica papaya HOM05D007562 ORTHO05D009721 7.7e-08 63.2 309 29.4


User provided reference genes

Program Settings