Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 6.6e-91 337.4 179 100.0
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.1e-85 320.1 177 94.4
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 4.4e-79 298.1 179 87.7
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 2.5e-74 282.3 182 84.1
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 9.0e-72 273.9 186 81.7
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 3.4e-71 271.9 181 83.4
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 2.9e-70 268.9 182 81.9
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 3.8e-70 268.5 182 81.3
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 1.4e-69 266.5 183 82.0
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 1.0e-67 260.4 182 80.2
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 2.3e-67 259.2 181 81.8
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 1.9e-66 256.1 220 67.7
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 6.2e-65 251.1 184 80.4
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 2.6e-63 245.7 182 77.5
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 3.4e-63 245.4 137 94.2
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.5e-60 235.3 185 71.4
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.3e-59 233.4 184 69.6
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 8.7e-59 230.7 186 73.7
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 8.7e-59 230.7 186 73.7
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 8.7e-59 230.7 186 73.7
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 4.2e-37 158.7 185 50.3
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 9.4e-37 157.5 185 49.7
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.4e-35 153.7 182 52.2
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 1.8e-35 153.3 185 51.4
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 2.3e-35 152.9 184 52.2
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 3.0e-35 152.5 194 49.5
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 3.0e-35 152.5 186 49.5
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 3.9e-35 152.1 183 52.5
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 5.1e-35 151.8 110 70.9
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 5.1e-35 151.8 183 50.8
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 5.1e-35 151.8 106 74.5
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 6.7e-35 151.4 106 72.6
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 8.8e-35 151.0 180 52.2
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 1.1e-34 150.6 102 77.5
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 1.1e-34 150.6 190 51.1
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 1.5e-34 150.2 181 51.4
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.6e-34 149.4 190 51.1
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 4.4e-34 148.7 128 64.1
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 4.4e-34 148.7 189 50.8
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 7.4e-34 147.9 183 50.8
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 7.4e-34 147.9 97 74.2
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 9.7e-34 147.5 190 53.2
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 9.7e-34 147.5 190 53.2
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.7e-33 146.7 107 67.3
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 2.8e-33 146.0 194 48.5
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.7e-33 145.6 97 73.2
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 3.7e-33 145.6 188 48.9
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 3.7e-33 145.6 186 49.5
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 3.7e-33 145.6 195 46.7
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 8.2e-33 144.4 96 74.0
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 1.1e-32 144.1 103 69.9
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 1.1e-32 144.1 203 48.8
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 1.4e-32 143.7 100 72.0
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 1.4e-32 143.7 103 68.0
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 1.8e-32 143.3 110 66.4
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.8e-32 143.3 110 66.4
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 1.8e-32 143.3 161 54.0
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 2.4e-32 142.9 92 77.2
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 2.4e-32 142.9 98 76.5
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 4.1e-32 142.1 194 47.9
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 4.1e-32 142.1 104 69.2
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 5.3e-32 141.7 166 51.8
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 5.3e-32 141.7 179 48.0
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 5.3e-32 141.7 107 69.2
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 7.0e-32 141.4 82 92.7
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 9.1e-32 141.0 94 74.5
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 9.1e-32 141.0 176 49.4
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 9.1e-32 141.0 183 48.6
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.2e-31 140.6 181 48.1
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 1.2e-31 140.6 124 60.5
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 1.5e-31 140.2 163 50.3
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 2.0e-31 139.8 95 71.6
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 2.6e-31 139.4 178 49.4
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 3.5e-31 139.0 95 73.7
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.5e-31 138.7 188 49.5
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 5.9e-31 138.3 100 72.0
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 7.7e-31 137.9 112 64.3
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 7.7e-31 137.9 185 48.1
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 1.0e-30 137.5 182 47.3
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 1.0e-30 137.5 186 47.3
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.7e-30 136.7 112 64.3
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 1.7e-30 136.7 180 49.4
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 2.2e-30 136.3 91 75.8
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 2.2e-30 136.3 91 75.8
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 3.8e-30 135.6 102 68.6
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 3.8e-30 135.6 105 67.6
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 5.0e-30 135.2 96 72.9
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 6.5e-30 134.8 94 74.5
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 6.5e-30 134.8 110 64.5
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 1.5e-29 133.7 115 61.7
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.5e-29 133.7 100 68.0
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 2.5e-29 132.9 96 68.8
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 7.2e-29 131.3 186 46.2
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 9.4e-29 131.0 94 70.2
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 9.4e-29 131.0 111 64.0
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 1.6e-28 130.2 112 61.6
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.7e-28 129.4 175 48.0
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 2.7e-28 129.4 188 45.2
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.6e-28 129.0 175 48.6
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 3.6e-28 129.0 178 46.1
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 3.6e-28 129.0 129 59.7
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 3.6e-28 129.0 190 45.8
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 8.0e-28 127.9 112 59.8
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 1.4e-27 127.1 219 44.3
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.3e-27 126.3 125 56.8
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 3.3e-26 122.5 83 71.1
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 6.3e-25 118.2 101 58.4
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 9.1e-24 114.4 77 71.4
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 1.2e-23 114.0 120 51.7
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 5.9e-23 111.7 78 67.9
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 2.9e-22 109.4 92 58.7
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.7e-20 102.8 103 52.4
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.4e-19 100.5 102 51.0
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 2.3e-19 99.8 73 67.1
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 2.3e-19 99.8 72 68.1
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 8.8e-19 97.8 106 53.8
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.2e-18 97.4 109 48.6
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.0e-15 86.7 59 72.9
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 2.2e-14 83.2 135 43.7
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 8.5e-14 81.3 104 49.0
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 1.2e-12 77.4 61 65.6
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.1e-12 76.6 149 43.0
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.6e-12 75.9 61 67.2
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 3.0e-11 72.8 108 35.2
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 4.0e-11 72.4 144 35.4
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 5.7e-10 68.6 42 81.0
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 4.9e-09 65.5 122 37.7
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 2.4e-08 63.2 118 43.2
AagrBONN_evm.TU.Sc2ySwM_368.656 Anthoceros agrestis HOM05D005889 ORTHO05D007495 9.1e-08 61.2 63 46.0
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.2e-07 60.8 85 34.1
Gorai.009G308300 Gossypium raimondii HOM05D001962 ORTHO05D019237 3.5e-07 59.3 149 37.6
Gohir.A13G059250 Gossypium hirsutum HOM05D001962 ORTHO05D019237 1.3e-06 57.4 89 41.6
Gohir.A08G189616 Gossypium hirsutum HOM05D001962 ORTHO05D019237 2.9e-06 56.2 89 41.6
Gohir.D12G031850 Gossypium hirsutum HOM05D001962 ORTHO05D019237 5.0e-06 55.5 125 35.2


User provided reference genes

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