Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 3.6e-144 515.0 277 100.0
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 7.0e-140 500.7 277 97.8
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 1.6e-139 499.6 277 97.1
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 1.9e-137 492.7 277 94.9
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 2.0e-134 482.6 277 93.1
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 2.0e-134 482.6 277 93.5
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 5.7e-134 481.1 277 93.1
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 1.7e-133 479.6 277 92.4
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 8.3e-133 477.2 277 91.7
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 1.4e-132 476.5 277 92.1
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 1.8e-132 476.1 277 91.7
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 1.8e-132 476.1 277 91.7
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 4.9e-125 451.4 277 86.6
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-124 450.3 277 87.0
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-124 450.3 277 87.0
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 1.1e-124 450.3 277 87.0
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 2.4e-124 449.1 319 78.7
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 4.6e-123 444.9 281 85.4
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 1.5e-113 413.3 279 78.9
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 1.9e-113 412.9 274 78.5
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 7.3e-113 411.0 274 77.4
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 9.5e-113 410.6 274 78.1
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 2.1e-112 409.5 276 77.5
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 2.8e-112 409.1 274 78.5
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 4.7e-112 408.3 277 76.5
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 4.7e-112 408.3 274 76.3
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 1.8e-111 406.4 274 77.4
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 1.8e-111 406.4 277 76.9
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 2.3e-111 406.0 277 76.2
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 6.8e-111 404.4 274 76.6
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 8.9e-111 404.1 274 76.6
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 1.5e-110 403.3 277 76.2
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 1.5e-110 403.3 277 76.2
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 2.6e-110 402.5 274 76.3
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 3.4e-110 402.1 274 76.6
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 4.4e-110 401.7 277 75.5
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 4.4e-110 401.7 276 75.7
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 4.4e-110 401.7 273 76.6
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 7.5e-110 401.0 274 77.4
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 1.3e-109 400.2 277 76.9
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 2.2e-109 399.4 274 75.5
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 8.3e-109 397.5 277 75.8
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 1.1e-108 397.1 274 77.0
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 1.1e-108 397.1 274 75.2
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.1e-108 397.1 277 75.1
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 1.9e-108 396.4 277 75.8
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 1.9e-108 396.4 277 74.7
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.4e-108 396.0 277 74.7
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.4e-108 396.0 277 74.7
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 4.1e-108 395.2 277 75.5
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 4.1e-108 395.2 274 75.5
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 4.1e-108 395.2 277 74.4
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 7.1e-108 394.4 274 74.8
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 1.2e-107 393.7 277 74.4
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 2.1e-107 392.9 277 74.4
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 3.5e-107 392.1 277 74.0
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.0e-107 391.3 277 74.0
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 7.8e-107 391.0 275 76.7
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.0e-106 390.6 272 76.1
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.0e-106 390.6 276 74.3
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 1.3e-106 390.2 277 74.0
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 1.3e-106 390.2 276 74.6
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 2.3e-106 389.4 274 73.4
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.0e-106 389.0 272 75.4
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 3.0e-106 389.0 277 73.6
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 3.0e-106 389.0 275 75.3
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 3.9e-106 388.7 274 74.8
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 8.6e-106 387.5 304 69.1
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 1.1e-105 387.1 274 75.2
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 1.5e-105 386.7 272 74.6
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 3.3e-105 385.6 273 77.3
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.3e-105 385.6 288 71.9
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 4.3e-105 385.2 273 74.4
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 7.3e-105 384.4 276 73.6
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 9.5e-105 384.0 275 74.2
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 9.5e-105 384.0 275 74.2
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 1.2e-104 383.6 277 73.3
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.2e-104 383.6 275 73.8
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.2e-104 383.6 273 74.0
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 8.1e-104 380.9 275 74.2
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.1e-103 380.6 278 71.9
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 1.8e-103 379.8 275 72.7
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 1.8e-103 379.8 273 74.4
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 6.8e-103 377.9 270 72.6
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 6.8e-103 377.9 275 72.4
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 8.9e-103 377.5 272 73.2
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.2e-102 377.1 277 72.2
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 2.0e-102 376.3 272 73.2
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 3.4e-102 375.6 275 72.4
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 3.4e-102 375.6 276 72.5
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 5.8e-102 374.8 286 71.3
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 1.3e-101 373.6 293 69.3
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 1.3e-101 373.6 272 72.8
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.2e-101 372.9 273 73.3
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 2.4e-100 369.4 281 69.8
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 2.7e-99 365.9 255 78.4
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 4.6e-99 365.2 273 72.5
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 6.0e-99 364.8 274 70.1
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 5.6e-97 358.2 291 66.0
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 5.6e-97 358.2 277 67.9
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 7.3e-97 357.8 277 70.8
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-95 353.6 255 77.3
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 4.0e-95 352.1 282 70.6
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 6.8e-95 351.3 282 70.9
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 8.9e-95 350.9 258 76.7
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 8.9e-95 350.9 267 70.0
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 8.9e-95 350.9 336 60.1
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 1.2e-94 350.5 259 76.8
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 2.0e-94 349.7 269 69.9
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 3.4e-94 349.0 273 69.6
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 5.8e-94 348.2 272 68.0
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 5.8e-94 348.2 279 67.4
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 9.9e-94 347.4 272 68.0
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 4.9e-93 345.1 282 70.6
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 5.4e-92 341.7 282 70.2
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 7.1e-92 341.3 325 60.9
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 9.3e-92 340.9 264 67.4
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 3.5e-91 339.0 282 69.9
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 3.0e-90 335.9 367 55.0
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 2.5e-89 332.8 267 67.0
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 9.0e-87 324.3 266 66.5
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 9.9e-86 320.9 266 63.9
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 8.4e-85 317.8 257 66.5
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 1.4e-84 317.0 274 58.8
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 2.1e-83 313.2 226 77.0
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 3.5e-83 312.4 275 58.2
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.6e-80 303.5 211 74.9
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 2.1e-80 303.1 256 68.8
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-79 300.8 281 64.8
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 1.8e-79 300.1 269 60.6
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 1.2e-78 297.4 267 59.9
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 3.4e-78 295.8 264 59.8
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 3.2e-76 289.3 264 57.6
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 5.5e-76 288.5 486 41.8
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.2e-75 287.3 264 57.6
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.6e-75 287.0 486 41.6
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 3.3e-73 279.3 267 56.2
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 8.1e-72 274.6 277 54.2
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 8.4e-69 264.6 252 61.9
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 1.3e-66 257.3 270 51.9
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 1.8e-66 256.9 267 58.8
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 1.6e-64 250.4 164 78.7
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 8.2e-64 248.1 258 57.4
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 5.9e-62 241.9 286 55.2
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 2.9e-61 239.6 267 53.2
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 2.2e-56 223.4 131 90.1
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 2.9e-53 213.0 140 77.1
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 6.1e-51 205.3 272 48.2
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 2.7e-43 179.9 131 74.0
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 3.3e-41 172.9 136 68.4
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 5.7e-41 172.2 138 63.8
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 7.4e-41 171.8 415 33.7
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.8e-40 169.9 148 64.2
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.3e-37 161.0 164 57.9
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 1.3e-37 161.0 216 46.8
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.2e-35 154.5 96 82.3
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.7e-35 153.3 130 65.4
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.8e-34 150.6 101 78.2
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 4.0e-26 122.9 95 70.5
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 6.8e-26 122.1 141 50.4
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 8.8e-26 121.7 265 32.1
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 1.5e-25 120.9 264 33.0
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 3.7e-24 116.3 291 29.2
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 8.3e-24 115.2 139 47.5
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-22 111.3 111 60.4
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 8.5e-21 105.1 73 78.1
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 7.2e-20 102.1 150 46.0
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 7.5e-17 92.0 52 92.3
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 9.8e-17 91.7 52 90.4
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 9.8e-17 91.7 52 90.4
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.3e-16 91.3 72 61.1
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.3e-16 91.3 72 61.1
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 2.2e-16 90.5 52 90.4
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 3.7e-16 89.7 68 64.7
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-15 88.2 52 88.5
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.4e-15 87.8 72 58.3
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.4e-15 87.8 59 76.3
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 2.4e-15 87.0 69 65.2
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 2.4e-15 87.0 70 62.9
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.1e-15 86.7 72 58.3
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 4.1e-15 86.3 50 88.0
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 1.9e-12 77.4 53 71.7
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 4.4e-09 66.2 65 55.4
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 4.1e-07 59.7 52 55.8
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 7.0e-07 58.9 40 75.0


User provided reference genes

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