Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 3.9e-61 238.8 218 100.0
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 7.9e-54 214.5 219 71.2
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 2.0e-49 199.9 219 88.1
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 6.5e-48 194.9 221 60.6
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 4.2e-47 192.2 218 52.8
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 9.3e-47 191.0 230 67.8
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 1.2e-46 190.7 219 82.6
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 1.6e-46 190.3 218 52.3
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 1.9e-44 183.3 218 51.8
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 3.7e-43 179.1 226 49.6
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 1.8e-37 160.2 220 60.9
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 3.9e-37 159.1 219 71.7
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 4.8e-35 152.1 218 45.0
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 1.7e-32 143.7 219 43.8
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 3.8e-32 142.5 217 59.9
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 5.5e-31 138.7 215 45.6
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 7.2e-31 138.3 214 57.9
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 9.4e-31 137.9 247 49.0
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 8.8e-29 131.3 217 51.2
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 5.7e-28 128.6 91 75.8
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 5.7e-28 128.6 91 75.8
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 5.7e-28 128.6 217 41.5
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 1.1e-26 124.4 215 38.6
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 5.3e-26 122.1 215 40.0
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 1.5e-25 120.6 176 42.6
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 1.5e-25 120.6 176 42.6
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 4.5e-25 119.0 221 45.2
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 1.7e-24 117.1 205 40.0
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 1.7e-24 117.1 205 40.0
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 5.0e-24 115.5 205 39.5
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 7.2e-23 111.7 216 35.6
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 7.2e-23 111.7 219 47.0
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 9.4e-23 111.3 221 34.8
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 2.1e-22 110.2 216 35.2
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 7.9e-22 108.2 217 33.6
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 7.9e-22 108.2 221 35.7
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 1.8e-21 107.1 218 35.8
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.8e-21 107.1 210 37.1
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.8e-21 107.1 210 35.2
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 3.0e-21 106.3 217 34.1
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 3.9e-21 105.9 231 35.9
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 5.2e-21 105.5 217 33.2
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 6.7e-21 105.1 216 33.3
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 4.4e-20 102.4 210 34.3
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 9.7e-20 101.3 178 45.5
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 9.7e-20 101.3 217 35.5
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 9.7e-20 101.3 180 35.0
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 1.7e-19 100.5 215 31.6
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 2.2e-19 100.1 219 49.8
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 2.8e-19 99.8 222 34.2
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 3.7e-19 99.4 219 36.5
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 8.2e-19 98.2 217 32.7
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 1.4e-18 97.4 226 31.0
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.8e-18 97.1 175 45.7
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.4e-18 96.7 216 32.4
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 2.4e-18 96.7 216 32.4
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 2.4e-18 96.7 181 46.4
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 3.1e-18 96.3 211 29.9
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 3.1e-18 96.3 178 53.4
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 7.0e-18 95.1 217 32.3
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 9.1e-18 94.7 216 31.9
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 1.2e-17 94.4 189 42.3
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 1.2e-17 94.4 178 40.4
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 2.0e-17 93.6 178 47.8
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 2.0e-17 93.6 221 37.6
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.6e-17 93.2 216 31.5
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 3.5e-17 92.8 188 31.4
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 4.5e-17 92.4 216 46.8
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 4.5e-17 92.4 183 33.3
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 7.7e-17 91.7 223 34.1
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 1.3e-16 90.9 182 32.4
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.9e-16 89.7 212 28.3
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.9e-16 89.7 212 28.3
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 3.8e-16 89.4 179 29.6
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 6.5e-16 88.6 177 31.1
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 8.5e-16 88.2 200 29.5
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 1.1e-15 87.8 183 31.1
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 1.1e-15 87.8 220 30.9
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 2.5e-15 86.7 178 31.5
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 1.2e-14 84.3 211 30.8
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 2.1e-14 83.6 198 28.8
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 2.1e-14 83.6 49 73.5
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 2.7e-14 83.2 221 29.4
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 2.7e-14 83.2 215 27.4
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 8.0e-14 81.6 176 31.8
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 8.0e-14 81.6 180 37.2
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 1.0e-13 81.3 216 31.5
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 1.0e-13 81.3 53 60.4
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 1.4e-13 80.9 179 35.2
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 2.3e-13 80.1 191 30.4
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 2.3e-13 80.1 191 30.4
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 2.3e-13 80.1 68 54.4
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 2.3e-13 80.1 179 29.1
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 2.3e-13 80.1 180 41.1
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 2.3e-13 80.1 180 41.7
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 3.0e-13 79.7 90 44.4
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 4.0e-13 79.3 176 43.2
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 6.7e-13 78.6 190 27.9
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 2.6e-12 76.6 208 27.4
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 2.6e-12 76.6 53 60.4
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 3.3e-12 76.3 235 30.6
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 3.3e-12 76.3 179 27.4
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 1.3e-11 74.3 91 44.0
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 1.3e-11 74.3 188 25.5
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 1.7e-11 73.9 53 64.2
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 1.7e-11 73.9 183 30.1
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 2.8e-11 73.2 195 26.7
BcaC08g44071 Brassica carinata HOM05D005169 ORTHO05D006436 4.8e-11 72.4 43 83.7
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 6.3e-11 72.0 54 61.1
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 6.3e-11 72.0 90 38.9
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 8.2e-11 71.6 170 35.9
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 8.2e-11 71.6 90 41.1
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.8e-10 70.5 231 30.7
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 1.8e-10 70.5 216 23.6
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 4.1e-10 69.3 191 35.1
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 7.0e-10 68.6 49 63.3
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 2.0e-09 67.0 205 29.8
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 2.0e-09 67.0 72 45.8
BcaC04g22405 Brassica carinata HOM05D005169 ORTHO05D006436 3.5e-09 66.2 43 76.7
C09p19720 Brassica napus HOM05D005169 ORTHO05D006436 3.5e-09 66.2 43 76.7
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 4.5e-09 65.9 53 49.1
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 7.7e-09 65.1 49 57.1
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 1.7e-08 63.9 48 54.2
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 2.9e-08 63.2 50 56.0
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 6.5e-08 62.0 44 70.5
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 1.1e-07 61.2 67 46.3
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 1.9e-07 60.5 36 72.2
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 2.5e-07 60.1 69 43.5
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 5.5e-07 58.9 161 24.8
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 7.2e-07 58.5 48 52.1
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 7.2e-07 58.5 47 53.2
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 9.4e-07 58.2 87 43.7
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 1.2e-06 57.8 51 51.0


User provided reference genes

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