Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 3.6e-180 634.8 319 100.0
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 1.6e-175 619.4 319 98.1
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 7.0e-168 594.0 320 94.1
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 7.7e-167 590.5 321 94.4
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 4.7e-164 581.3 319 90.9
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 1.4e-163 579.7 321 91.3
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 2.3e-163 578.9 321 91.0
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 3.0e-163 578.6 315 92.1
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 6.8e-163 577.4 321 90.7
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 4.8e-161 571.2 317 89.9
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 5.4e-160 567.8 328 88.1
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 3.5e-159 565.1 322 87.9
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 7.3e-149 530.8 318 84.3
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.1e-144 516.9 317 81.4
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 1.2e-140 503.4 317 81.4
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 3.1e-139 498.8 319 76.8
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 9.2e-136 487.3 319 76.8
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 1.7e-134 483.0 319 75.9
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 3.0e-134 482.3 319 74.3
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 1.9e-133 479.6 319 74.3
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 9.5e-133 477.2 319 76.2
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 4.7e-132 474.9 319 74.3
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 3.1e-131 472.2 319 74.6
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 3.1e-131 472.2 318 74.8
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 5.2e-131 471.5 319 76.2
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 6.8e-131 471.1 320 74.4
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 8.9e-131 470.7 317 74.8
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 1.2e-130 470.3 317 74.4
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 1.5e-130 469.9 317 74.8
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 2.0e-130 469.5 319 74.9
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 2.6e-130 469.2 322 74.5
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 2.6e-130 469.2 319 74.3
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 3.4e-130 468.8 319 74.6
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 3.4e-130 468.8 319 74.6
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 3.4e-130 468.8 316 74.7
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 4.4e-130 468.4 319 74.3
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 4.4e-130 468.4 319 74.6
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 1.7e-129 466.5 319 73.0
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 4.9e-129 464.9 317 73.8
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 4.9e-129 464.9 318 74.5
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 8.3e-129 464.2 317 74.4
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 1.4e-128 463.4 320 74.1
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 1.9e-128 463.0 317 72.9
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 1.9e-128 463.0 317 72.9
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 2.4e-128 462.6 317 75.1
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 2.4e-128 462.6 317 72.6
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 4.1e-128 461.8 319 73.4
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 7.1e-128 461.1 319 73.4
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 9.2e-128 460.7 319 73.0
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 9.2e-128 460.7 317 74.1
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.2e-127 460.3 319 74.0
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 1.6e-127 459.9 319 73.4
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 1.6e-127 459.9 319 73.0
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 2.1e-127 459.5 316 73.7
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 2.7e-127 459.1 317 73.8
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.5e-127 458.8 319 73.4
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.5e-127 458.8 321 73.5
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 6.0e-127 458.0 314 73.9
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 6.0e-127 458.0 336 69.6
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 1.0e-126 457.2 319 72.7
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-126 456.8 313 73.2
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 1.3e-126 456.8 321 71.0
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 3.0e-126 455.7 317 72.6
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 3.0e-126 455.7 315 72.7
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 3.0e-126 455.7 319 72.4
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 3.0e-126 455.7 319 71.2
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 3.9e-126 455.3 321 71.0
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 5.1e-126 454.9 319 72.4
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 6.6e-126 454.5 318 72.3
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 8.6e-126 454.1 319 71.5
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 1.1e-125 453.8 317 72.2
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 1.1e-125 453.8 319 72.4
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 1.5e-125 453.4 319 71.8
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 1.5e-125 453.4 319 72.7
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.9e-125 453.0 316 72.5
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 1.9e-125 453.0 316 71.8
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 3.3e-125 452.2 317 71.3
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 4.3e-125 451.8 319 72.4
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 7.3e-125 451.1 319 72.1
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 7.3e-125 451.1 319 72.1
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.1e-124 449.5 319 71.8
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 2.1e-124 449.5 319 70.5
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 2.8e-124 449.1 319 71.5
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 2.8e-124 449.1 320 70.9
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 4.7e-124 448.4 319 70.8
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 8.1e-124 447.6 319 70.2
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 4.0e-123 445.3 317 71.9
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 2.6e-122 442.6 319 70.8
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 9.9e-122 440.7 317 69.7
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 9.9e-122 440.7 319 70.8
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 2.2e-121 439.5 316 69.9
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 2.2e-121 439.5 317 69.7
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 3.2e-120 435.6 318 70.8
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 7.1e-120 434.5 320 69.7
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 1.2e-119 433.7 318 70.1
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 8.7e-118 427.6 317 67.8
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 8.7e-118 427.6 289 75.1
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 2.5e-117 426.0 338 65.1
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 1.4e-115 420.2 289 73.7
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 1.8e-115 419.9 247 82.2
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.8e-115 419.9 307 69.4
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 9.0e-115 417.5 321 67.0
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 5.8e-114 414.8 251 80.5
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 8.4e-113 411.0 340 64.1
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.7e-111 406.0 251 79.3
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 1.1e-109 400.6 327 63.3
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 1.3e-108 397.1 270 74.4
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 1.3e-108 397.1 327 62.4
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 9.0e-107 391.0 329 62.6
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.2e-104 382.5 313 63.9
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 6.7e-102 374.8 221 82.4
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 1.1e-101 374.0 315 62.5
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 9.0e-99 364.4 331 58.3
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 1.2e-98 364.0 319 59.2
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 3.8e-97 359.0 231 71.9
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 2.5e-96 356.3 230 73.0
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.1e-95 353.2 320 60.9
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 4.6e-95 352.1 336 54.8
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 2.5e-93 346.3 313 61.0
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 4.3e-93 345.5 306 62.4
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 3.4e-90 335.9 319 58.6
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 1.1e-83 314.3 204 76.0
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.0e-82 310.1 256 60.5
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 1.7e-81 307.0 222 69.4
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 1.2e-79 300.8 328 52.1
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 3.7e-76 289.3 162 84.6
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 1.0e-73 281.2 222 66.2
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 1.8e-70 270.4 279 52.0
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 1.5e-69 267.3 316 47.8
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 7.4e-69 265.0 246 63.8
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 1.2e-66 257.7 152 82.2
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 7.2e-64 248.4 171 74.3
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 3.6e-63 246.1 361 42.4
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 6.7e-62 241.9 150 76.0
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 7.2e-56 221.9 181 65.2
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.7e-55 219.9 131 79.4
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 7.5e-53 211.8 172 64.5
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 9.4e-48 194.9 131 74.0
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 2.7e-47 193.4 296 39.5
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 8.0e-47 191.8 124 74.2
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-46 191.0 120 75.0
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-46 191.0 112 81.2
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.8e-46 188.3 124 72.6
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.2e-45 188.0 124 72.6
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.6e-45 186.8 114 77.2
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.4e-45 186.0 124 71.8
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.7e-45 185.7 120 74.2
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-44 184.5 120 74.2
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.8e-44 183.3 120 72.5
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.1e-43 179.9 118 72.0
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.1e-39 165.6 305 40.0
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-38 164.5 93 84.9
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.8e-38 164.1 164 56.7
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 1.7e-36 157.5 101 72.3
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 4.9e-36 156.0 101 71.3
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 9.5e-32 141.7 96 75.0
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 9.5e-32 141.7 96 75.0
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 4.4e-29 132.9 98 67.3
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.5e-29 132.1 82 74.4
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.4e-27 127.1 143 51.0
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 1.0e-25 121.7 153 50.3
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.7e-20 104.4 64 81.2
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.7e-20 103.2 64 81.2
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 7.1e-19 99.0 74 70.3
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 4.3e-16 89.7 50 84.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 4.3e-16 89.7 50 84.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-15 88.2 50 82.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.2e-15 88.2 50 82.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 2.1e-15 87.4 47 83.0
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 6.2e-15 85.9 62 62.9
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 8.1e-15 85.5 114 49.1
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.1e-14 83.6 100 51.0
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.5e-13 81.3 100 48.0
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 2.0e-13 80.9 253 26.5
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.6e-13 80.5 100 48.0
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 3.4e-13 80.1 85 54.1
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 3.5e-10 70.1 91 50.5
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 7.3e-08 62.4 89 47.2
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 9.6e-08 62.0 62 54.8


User provided reference genes

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