Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 2.1e-134 482.6 293 100.0
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 2.0e-113 412.9 294 88.8
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.5e-100 370.2 298 78.2
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 2.0e-97 359.8 289 82.0
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 5.9e-89 331.6 276 77.2
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 6.1e-86 321.6 279 76.0
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 6.1e-86 321.6 242 78.9
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 1.0e-85 320.9 279 76.0
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 6.8e-85 318.2 232 80.2
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 1.2e-84 317.4 245 78.8
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 1.2e-84 317.4 232 80.2
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 1.7e-83 313.5 273 76.6
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 2.2e-83 313.2 293 73.7
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 3.7e-83 312.4 302 71.9
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 3.5e-81 305.8 274 74.5
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 6.0e-81 305.1 228 75.4
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.6e-78 297.0 285 66.7
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 1.8e-77 293.5 276 71.0
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 3.7e-67 259.2 291 60.5
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 1.0e-64 251.1 203 77.8
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 3.0e-56 223.0 239 63.2
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 3.9e-56 222.6 239 55.6
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 1.5e-55 220.7 275 52.4
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 7.3e-55 218.4 223 62.3
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 2.1e-54 216.9 227 52.9
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 2.1e-54 216.9 229 52.0
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 4.8e-54 215.7 237 56.5
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 1.1e-53 214.5 235 56.6
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 1.1e-53 214.5 240 57.5
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 1.8e-53 213.8 233 55.8
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 1.8e-53 213.8 246 58.5
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 3.1e-53 213.0 281 52.3
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 4.0e-53 212.6 240 58.3
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 9.0e-53 211.5 267 55.8
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 1.5e-52 210.7 128 82.0
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 1.5e-52 210.7 274 52.2
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 9.9e-52 208.0 273 47.6
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 9.9e-52 208.0 232 56.9
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 1.3e-51 207.6 228 54.8
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 2.2e-51 206.8 288 49.3
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 2.2e-51 206.8 237 50.2
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.2e-51 206.8 224 54.9
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 4.9e-51 205.7 274 55.1
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 4.9e-51 205.7 229 52.4
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 1.1e-50 204.5 263 48.3
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 1.4e-50 204.1 236 53.0
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 2.4e-50 203.4 264 54.2
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 4.2e-50 202.6 266 47.4
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 5.4e-50 202.2 271 53.1
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 9.3e-50 201.4 225 59.1
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 9.3e-50 201.4 263 49.4
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 1.2e-49 201.1 225 59.1
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 2.7e-49 199.9 237 57.4
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 2.7e-49 199.9 264 54.9
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 4.6e-49 199.1 210 53.8
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 4.6e-49 199.1 241 58.5
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 4.6e-49 199.1 238 58.4
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 6.0e-49 198.7 225 57.3
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 6.0e-49 198.7 219 49.3
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 6.0e-49 198.7 215 56.3
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 7.8e-49 198.4 239 51.5
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.0e-48 198.0 235 51.1
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 1.3e-48 197.6 218 50.5
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 1.7e-48 197.2 281 49.8
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 3.0e-48 196.4 249 47.4
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 3.0e-48 196.4 224 58.9
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 3.9e-48 196.1 248 53.2
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 3.9e-48 196.1 201 61.2
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 3.9e-48 196.1 269 42.4
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 3.9e-48 196.1 265 47.5
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 5.1e-48 195.7 230 58.7
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 6.6e-48 195.3 226 57.5
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 8.7e-48 194.9 232 50.0
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 1.5e-47 194.1 276 52.2
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 2.5e-47 193.4 227 57.3
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 3.3e-47 193.0 223 55.6
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 7.3e-47 191.8 242 53.3
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 9.6e-47 191.4 272 50.7
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 9.6e-47 191.4 236 54.7
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 9.6e-47 191.4 272 45.6
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 1.3e-46 191.0 218 52.8
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 1.6e-46 190.7 274 48.9
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 2.1e-46 190.3 228 57.5
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 2.1e-46 190.3 297 47.5
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 2.8e-46 189.9 228 54.4
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 3.6e-46 189.5 215 58.6
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 6.2e-46 188.7 201 57.2
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.1e-45 188.0 224 50.9
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.1e-45 188.0 219 51.1
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 2.4e-45 186.8 233 55.4
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 3.1e-45 186.4 221 49.8
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 4.0e-45 186.0 230 51.3
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 9.0e-45 184.9 230 51.3
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 1.2e-44 184.5 226 53.5
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 2.0e-44 183.7 232 47.4
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 2.0e-44 183.7 264 46.2
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.3e-43 181.0 217 50.2
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 2.2e-43 180.3 267 49.8
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 8.4e-43 178.3 288 48.3
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.1e-42 177.9 223 46.6
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 2.4e-42 176.8 297 47.8
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.0e-40 171.4 111 72.1
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 3.9e-40 169.5 231 42.0
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 9.6e-39 164.9 214 45.3
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 1.4e-37 161.0 196 44.4
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 6.9e-37 158.7 214 46.3
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 6.9e-37 158.7 190 56.8
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 9.0e-37 158.3 131 61.1
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 7.6e-36 155.2 177 50.8
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 1.0e-35 154.8 118 61.0
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 3.8e-35 152.9 119 61.3
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.4e-34 151.0 131 56.5
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 5.5e-34 149.1 101 69.3
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 5.5e-34 149.1 218 47.2
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.6e-33 147.5 202 55.4
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 3.5e-33 146.4 106 62.3
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 4.6e-33 146.0 106 63.2
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 1.0e-32 144.8 104 62.5
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 1.8e-32 144.1 106 61.3
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 1.8e-32 144.1 187 45.5
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 5.1e-32 142.5 112 58.0
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 5.7e-31 139.0 107 59.8
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 7.4e-31 138.7 104 59.6
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 9.6e-31 138.3 141 52.5
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 1.8e-29 134.0 114 55.3
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 5.3e-29 132.5 113 56.6
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 9.0e-29 131.7 115 54.8
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 1.5e-28 131.0 102 57.8
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 2.6e-28 130.2 108 54.6
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 3.4e-28 129.8 217 46.5
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 7.6e-28 128.6 114 52.6
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 7.6e-28 128.6 114 52.6
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 2.9e-27 126.7 120 51.7
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 2.5e-26 123.6 91 61.5
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 5.5e-26 122.5 224 43.3
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 1.6e-25 120.9 98 56.1
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 4.6e-25 119.4 85 62.4
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 6.1e-25 119.0 253 42.7
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 1.8e-24 117.5 86 60.5
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 1.1e-23 114.8 140 44.3
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 1.5e-23 114.4 108 50.0
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 1.9e-23 114.0 91 56.0
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 5.7e-23 112.5 86 58.1
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 5.3e-21 105.9 126 40.5
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 1.2e-20 104.8 86 55.8
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 1.2e-20 104.8 104 51.9
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 3.8e-19 99.8 274 37.2
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 8.5e-19 98.6 79 60.8
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 1.4e-18 97.8 277 35.7
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 1.4e-18 97.8 250 31.6
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 4.5e-12 76.3 112 40.2
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 7.7e-12 75.5 126 41.3
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 3.3e-07 60.1 65 44.6


User provided reference genes

Program Settings