Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G14410 Arabidopsis thaliana HOM05D007296 ORTHO05D009201 7.1e-81 303.9 156 100.0
AL6G25130 Arabidopsis lyrata HOM05D007296 ORTHO05D009201 1.2e-64 250.0 134 96.3
Carub.0006s1259 Capsella rubella HOM05D007296 ORTHO05D009201 1.8e-60 236.1 134 91.8
A10p24110 Brassica napus HOM05D007296 ORTHO05D009201 1.3e-58 229.9 157 79.6
Sp6g29610 Schrenkiella parvula HOM05D007296 ORTHO05D009201 2.2e-58 229.2 134 89.6
C09p62750 Brassica napus HOM05D007296 ORTHO05D009201 1.9e-57 226.1 157 78.3
BolC9t59112H Brassica oleracea HOM05D007296 ORTHO05D009201 3.2e-57 225.3 157 78.3
Thhalv10014918m.g Eutrema salsugineum HOM05D007296 ORTHO05D009201 4.2e-57 224.9 147 82.3
BraA10t44476Z Brassica rapa HOM05D007296 ORTHO05D009201 3.0e-55 218.8 149 79.9
CARHR198900 Cardamine hirsuta HOM05D007296 ORTHO05D009201 5.1e-55 218.0 134 84.3
Aa31LG11G15190 Aethionema arabicum HOM05D007296 ORTHO05D009201 6.2e-45 184.5 140 73.6
BcaB08g36986 Brassica carinata HOM05D007296 ORTHO05D009201 2.9e-42 175.6 157 65.0
THA.LOC104821171 Tarenaya hassleriana HOM05D007296 ORTHO05D009201 1.7e-18 96.7 129 50.4
Manes.15G152600 Manihot esculenta HOM05D007296 ORTHO05D009201 8.0e-16 87.8 148 40.5
Hma1.2p1_0818F.1_g223340 Hydrangea macrophylla HOM05D007296 ORTHO05D009201 2.3e-15 86.3 136 47.8
CAN.G473.34 Capsicum annuum HOM05D007296 ORTHO05D009201 8.8e-15 84.3 105 42.9
PGSC0003DMG400012614 Solanum tuberosum HOM05D007296 ORTHO05D009201 4.4e-14 82.0 91 49.5
TWI56G0033 Tripterygium wilfordii HOM05D007296 ORTHO05D009201 7.4e-14 81.3 131 40.5
Cc02_g32290 Coffea canephora HOM05D007296 ORTHO05D009201 1.7e-13 80.1 112 46.4
Gohir.A09G030400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 2.8e-13 79.3 84 52.4
Gohir.D09G030000 Gossypium hirsutum HOM05D007296 ORTHO05D009201 2.8e-13 79.3 84 52.4
Cpa.g.sc130.72 Carica papaya HOM05D007296 ORTHO05D009201 4.8e-13 78.6 109 50.5
SGA_v2.0_scaffold47G17522 Striga asiatica HOM05D000631 ORTHO05D000524 4.8e-13 78.6 132 40.9
DCAR_021738 Daucus carota HOM05D000631 ORTHO05D000524 1.8e-12 76.6 126 41.3
CiPaw.03G046500 Carya illinoinensis HOM05D007296 ORTHO05D009201 3.1e-12 75.9 102 52.9
TAR371G0818 Trochodendron aralioides HOM05D007296 ORTHO05D009201 3.1e-12 75.9 123 43.9
SGA_v2.0_scaffold18G08254 Striga asiatica HOM05D007296 ORTHO05D009201 4.1e-12 75.5 130 38.5
Migut.H00030 Erythranthe guttata HOM05D007296 ORTHO05D009201 5.3e-12 75.1 120 42.5
MBI10_g42976_MAGBIO Magnolia biondii HOM05D007296 ORTHO05D009201 5.3e-12 75.1 127 40.9
Lsat_1_v5_gn_0_6101 Lactuca sativa HOM05D007296 ORTHO05D009201 9.1e-12 74.3 79 55.7
Ciclev10017118m.g Citrus clementina HOM05D007296 ORTHO05D009201 1.2e-11 73.9 132 42.4
CiPaw.04G030100 Carya illinoinensis HOM05D007296 ORTHO05D009201 1.6e-11 73.6 139 42.4
Thecc.04G021100 Theobroma cacao HOM05D007296 ORTHO05D009201 1.6e-11 73.6 99 45.5
EL10Ac5g12075 Beta vulgaris HOM05D007296 ORTHO05D009201 3.5e-11 72.4 120 44.2
CSS0008661 Camellia sinensis var. sinensis HOM05D007296 ORTHO05D009201 3.5e-11 72.4 88 48.9
Haze_14767 Corylus avellana HOM05D007296 ORTHO05D009201 3.5e-11 72.4 145 42.1
Lsat_1_v5_gn_2_91081 Lactuca sativa HOM05D007296 ORTHO05D009201 3.5e-11 72.4 82 51.2
Duzib187G0331 Durio zibethinus HOM05D007296 ORTHO05D009201 4.5e-11 72.0 120 40.0
Glyma.19G078800 Glycine max HOM05D007296 ORTHO05D009201 4.5e-11 72.0 99 50.5
Dinv33417 Davidia involucrata HOM05D007296 ORTHO05D009201 5.9e-11 71.6 72 54.2
Atru.chr6.2441 Acer truncatum HOM05D007296 ORTHO05D009201 7.7e-11 71.2 98 50.0
Cfa007330 Carpinus fangiana HOM05D007296 ORTHO05D009201 7.7e-11 71.2 145 41.4
Potri.001G342100 Populus trichocarpa HOM05D007296 ORTHO05D009201 1.0e-10 70.9 143 40.6
PGR142G0831 Punica granatum HOM05D007296 ORTHO05D009201 2.9e-10 69.3 109 42.2
Glyma.16G068200 Glycine max HOM05D007296 ORTHO05D009201 3.8e-10 68.9 102 47.1
Sc16g0004380 Simmondsia chinensis HOM05D007296 ORTHO05D009201 3.8e-10 68.9 79 51.9
Eucgr.I01721 Eucalyptus grandis HOM05D007296 ORTHO05D009201 6.5e-10 68.2 94 51.1
QL02p073829 Quercus lobata HOM05D007296 ORTHO05D009201 8.5e-10 67.8 108 41.7
PSO017G3033 Papaver somniferum HOM05D007296 ORTHO05D009201 1.5e-09 67.0 109 42.2
SalBow1G6940 Salvia bowleyana HOM05D007296 ORTHO05D009201 1.5e-09 67.0 101 45.5
Lj1g0014101 Lotus japonicus HOM05D007296 ORTHO05D009201 1.9e-09 66.6 116 42.2
ClCG09G019420 Citrullus lanatus HOM05D007296 ORTHO05D009201 5.5e-09 65.1 116 38.8
Medtr7g033080 Medicago truncatula HOM05D007296 ORTHO05D009201 5.5e-09 65.1 73 50.7
VMungo1383G0878 Vigna mungo HOM05D007296 ORTHO05D009201 1.2e-08 63.9 105 44.8
Nn3g16657 Nelumbo nucifera HOM05D007296 ORTHO05D009201 1.6e-08 63.5 104 42.3
SGA_v2.0_scaffold135G34923 Striga asiatica HOM05D007296 ORTHO05D009201 1.6e-08 63.5 98 50.0
CiPaw.11G015200 Carya illinoinensis HOM05D007296 ORTHO05D009201 2.1e-08 63.2 63 58.7
Nn4g22550 Nelumbo nucifera HOM05D007296 ORTHO05D009201 2.1e-08 63.2 112 42.9
Phvul.008G151600 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 2.1e-08 63.2 82 51.2
Gorai.006G035000 Gossypium raimondii HOM05D007296 ORTHO05D009201 2.7e-08 62.8 55 58.2
Prupe.5G162900 Prunus persica HOM05D007296 ORTHO05D009201 2.7e-08 62.8 137 35.0
ATR0199G042 Amborella trichopoda HOM05D007296 ORTHO05D009201 3.6e-08 62.4 84 45.2
Solyc02g093525.1 Solanum lycopersicum HOM05D007296 ORTHO05D009201 3.6e-08 62.4 116 37.9
TPR.G1088 Trifolium pratense HOM05D007296 ORTHO05D009201 4.7e-08 62.0 72 50.0
TAR374G0807 Trochodendron aralioides HOM05D007296 ORTHO05D009201 8.0e-08 61.2 114 42.1
FAN09G0682 Fragaria x ananassa HOM05D007296 ORTHO05D009201 1.0e-07 60.8 80 47.5
Sopen02g038130 Solanum pennellii HOM05D007296 ORTHO05D009201 1.0e-07 60.8 91 42.9
MELO3C021597.2 Cucumis melo HOM05D007296 ORTHO05D009201 1.4e-07 60.5 98 39.8
Psat3g172000 Pisum sativum HOM05D007296 ORTHO05D009201 1.4e-07 60.5 106 42.5
FAN02G1968 Fragaria x ananassa HOM05D007296 ORTHO05D009201 1.8e-07 60.1 112 38.4
Lalb_Chr22g0360681 Lupinus albus HOM05D007296 ORTHO05D009201 1.8e-07 60.1 108 39.8
DCAR_015066 Daucus carota HOM05D007296 ORTHO05D009201 2.3e-07 59.7 126 36.5
ECA246G1504 Erigeron canadensis HOM05D007296 ORTHO05D009201 2.3e-07 59.7 84 44.0
FAN14G0692 Fragaria x ananassa HOM05D007296 ORTHO05D009201 2.3e-07 59.7 80 47.5
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 2.3e-07 59.7 62 53.2
Lj4g0005296 Lotus japonicus HOM05D007296 ORTHO05D009201 3.0e-07 59.3 112 41.1
Prupe.3G295100 Prunus persica HOM05D007296 ORTHO05D009201 3.0e-07 59.3 125 34.4
Ca_06610_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 4.0e-07 58.9 104 42.3
Ca_30727_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 4.0e-07 58.9 104 42.3
FvH4_6g51980 Fragaria vesca HOM05D007296 ORTHO05D009201 4.0e-07 58.9 124 37.9
FAN05G3275 Fragaria x ananassa HOM05D007296 ORTHO05D009201 5.2e-07 58.5 88 43.2
CsaV3_5G026960 Cucumis sativus L. HOM05D007296 ORTHO05D009201 6.7e-07 58.2 111 37.8
Aqoxy7G03797 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 8.8e-07 57.8 109 39.4
Ca_30679_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 8.8e-07 57.8 100 40.0
RcHm_v2.0_Chr2g0173451 Rosa chinensis HOM05D007296 ORTHO05D009201 1.2e-06 57.4 81 39.5
SalBow7G1031 Salvia bowleyana HOM05D007296 ORTHO05D009201 1.5e-06 57.0 94 44.7
Ah.12g055220 Amaranthus hybridus HOM05D007296 ORTHO05D009201 2.0e-06 56.6 59 55.9
Aqoxy5G03689 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 2.0e-06 56.6 109 39.4
COL.COLO4_30221 Corchorus olitorius HOM05D007296 ORTHO05D009201 4.4e-06 55.5 117 40.2


User provided reference genes

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