Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 1.4e-150 536.2 265 100.0
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 6.0e-141 504.2 265 93.6
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 1.3e-135 486.5 265 89.4
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 1.4e-132 476.5 265 89.1
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 1.4e-132 476.5 265 89.1
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 3.0e-132 475.3 257 91.1
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 2.5e-131 472.2 262 88.5
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 1.3e-130 469.9 256 90.2
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 3.7e-130 468.4 262 88.9
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 4.1e-129 464.9 262 89.3
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 4.1e-129 464.9 262 89.3
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 8.2e-114 414.1 262 79.4
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 1.0e-111 407.1 256 80.9
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 1.2e-99 367.1 259 69.9
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 4.2e-94 348.6 255 68.6
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 1.0e-92 344.0 255 68.2
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 3.0e-92 342.4 254 68.1
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 3.0e-92 342.4 244 70.1
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 1.2e-91 340.5 248 68.1
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 5.7e-91 338.2 257 66.5
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 9.8e-91 337.4 261 64.0
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 6.3e-90 334.7 247 66.4
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 8.3e-90 334.3 245 66.9
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 1.1e-89 334.0 244 68.9
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 1.4e-89 333.6 255 65.9
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 1.4e-89 333.6 255 65.9
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 1.8e-89 333.2 259 64.9
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 2.4e-89 332.8 258 63.6
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 5.4e-89 331.6 246 66.7
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 7.0e-89 331.3 252 65.1
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 2.7e-88 329.3 255 64.7
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 2.7e-88 329.3 244 68.0
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 3.5e-88 328.9 248 67.7
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 3.5e-88 328.9 254 65.4
vmacro18351 Vaccinium macrocarpon HOM05D006878 ORTHO05D008579 3.5e-88 328.9 263 62.0
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 4.5e-88 328.6 252 65.9
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 4.5e-88 328.6 244 67.2
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 4.5e-88 328.6 247 66.8
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 5.9e-88 328.2 244 68.0
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 1.0e-87 327.4 247 65.6
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 1.3e-87 327.0 244 66.0
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 6.6e-87 324.7 251 64.9
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 1.1e-86 323.9 252 66.7
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 1.5e-86 323.6 255 64.3
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 9.5e-86 320.9 257 62.6
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 2.1e-85 319.7 234 67.1
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 6.1e-85 318.2 255 62.4
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 1.0e-84 317.4 245 65.7
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 1.0e-84 317.4 248 63.7
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 1.4e-84 317.0 280 61.4
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 3.1e-84 315.8 239 66.9
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 5.2e-84 315.1 240 66.2
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 5.2e-84 315.1 245 64.9
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 2.0e-83 313.2 245 63.3
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 7.5e-83 311.2 251 60.2
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 7.5e-83 311.2 259 62.2
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 1.7e-82 310.1 251 62.2
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 1.7e-82 310.1 277 57.8
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 1.7e-82 310.1 253 64.4
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 2.9e-82 309.3 259 59.5
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 3.7e-82 308.9 258 58.5
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 1.1e-81 307.4 246 63.8
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 1.1e-81 307.4 249 63.9
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 5.4e-81 305.1 248 62.9
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 5.4e-81 305.1 250 64.8
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 9.2e-81 304.3 258 60.9
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 1.2e-80 303.9 245 63.3
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 1.2e-80 303.9 258 60.1
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 1.2e-80 303.9 280 57.9
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 2.0e-80 303.1 254 61.0
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 4.6e-80 302.0 255 59.2
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 4.6e-80 302.0 273 57.1
FvH4_6g53600 Fragaria vesca HOM05D006878 ORTHO05D008579 1.7e-79 300.1 279 57.3
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 3.3e-78 295.8 260 58.5
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 3.3e-78 295.8 256 58.2
FAN14G5463 Fragaria x ananassa HOM05D006878 ORTHO05D008579 4.3e-78 295.4 279 56.6
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 5.6e-78 295.0 248 62.9
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 5.6e-78 295.0 272 57.0
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 5.6e-78 295.0 243 62.6
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 9.5e-78 294.3 258 56.6
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 2.1e-77 293.1 245 61.2
MSTRG.3257 Avicennia marina HOM05D006878 ORTHO05D008579 2.1e-77 293.1 253 59.7
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 2.1e-77 293.1 256 59.0
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 3.6e-77 292.4 237 63.7
SGA_v2.0_scaffold47G17597 Striga asiatica HOM05D006878 ORTHO05D008579 3.6e-77 292.4 240 62.5
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 1.1e-76 290.8 239 61.5
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 1.1e-76 290.8 256 58.6
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 2.0e-75 286.6 224 64.7
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 4.4e-75 285.4 256 57.8
SalBow7G1076 Salvia bowleyana HOM05D006878 ORTHO05D008579 7.5e-75 284.6 259 57.9
CDE05G3687 Ceratophyllum demersum HOM05D000160 ORTHO05D000496 1.6e-72 276.9 236 61.4
EL10Ac6g15414 Beta vulgaris HOM05D006878 ORTHO05D008579 1.3e-71 273.9 253 59.3
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 4.3e-70 268.9 252 54.4
Zm00001eb112900 Zea mays HOM05D006878 ORTHO05D008579 4.3e-70 268.9 276 52.5
Os11g0498400 Oryza sativa ssp. japonica HOM05D006878 ORTHO05D008579 4.0e-68 262.3 281 49.5
Medtr7g029090 Medicago truncatula HOM05D006878 ORTHO05D008579 1.0e-63 247.7 193 65.8
Lju41C53T12 Lonicera japonica HOM05D006878 ORTHO05D008579 4.0e-60 235.7 249 51.8
Lalb_Chr22g0360351 Lupinus albus HOM05D006878 ORTHO05D008579 2.6e-59 233.0 183 66.1
BraA03t09977Z Brassica rapa HOM05D006878 ORTHO05D008579 4.4e-59 232.3 130 90.8
Pp3c4_16130 Physcomitrium patens HOM05D006878 ORTHO05D008579 1.2e-51 207.6 260 43.8
Mapoly0041s0098 Marchantia polymorpha HOM05D006878 ORTHO05D008579 2.0e-51 206.8 257 44.7
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 9.9e-51 204.5 129 72.9
SMO367G0946 Selaginella moellendorffii HOM05D006878 ORTHO05D008579 8.4e-50 201.4 227 47.1
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 6.2e-45 185.3 266 43.6
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 1.2e-43 181.0 121 69.4
CBR_g26294 Chara braunii HOM05D006878 ORTHO05D008579 5.4e-41 172.2 180 45.0
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 1.1e-38 164.5 245 44.1
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 1.4e-36 157.5 246 41.5
SEGI_11908 Sequoiadendron giganteum HOM05D006878 ORTHO05D008579 1.6e-32 144.1 121 58.7
FAN02G3703 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.9e-22 110.5 151 43.0
PRCOL_00001512 Prasinoderma coloniale HOM05D006878 ORTHO05D008579 1.3e-18 97.8 139 36.0
CDE05G3052 Ceratophyllum demersum HOM05D006878 ORTHO05D008579 6.5e-18 95.5 114 45.6
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 3.2e-17 93.2 111 52.3
Actinidia36205 Actinidia chinensis HOM05D006878 ORTHO05D008579 3.4e-11 73.2 46 69.6
FAN23G0458 Fragaria x ananassa HOM05D006878 ORTHO05D008579 5.5e-09 65.9 38 81.6
FAN23G0356 Fragaria x ananassa HOM05D006878 ORTHO05D008579 7.9e-08 62.0 46 58.7
Pp3c4_16200 Physcomitrium patens HOM05D006878 ORTHO05D008579 4.4e-06 56.2 137 32.8


User provided reference genes

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