Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2728.4 1382 100.0
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2712.9 1382 99.3
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2672.5 1382 97.3
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2656.3 1382 96.7
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2637.1 1382 95.9
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2635.9 1382 95.7
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2592.4 1383 94.1
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2591.6 1383 94.1
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2590.1 1383 94.1
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2589.3 1384 94.2
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2589.3 1384 94.2
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2575.4 1381 94.1
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2439.1 1384 87.8
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2438.3 1384 87.7
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2436.8 1384 87.9
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2434.8 1384 87.6
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2434.1 1384 87.4
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2429.8 1384 87.4
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2426.0 1384 87.7
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2421.7 1385 86.9
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2421.0 1384 86.9
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2420.6 1388 86.5
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2419.8 1384 86.8
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2419.0 1384 86.9
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2418.3 1384 87.6
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2418.3 1386 87.5
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2417.5 1385 87.1
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2417.5 1384 87.4
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2417.1 1385 87.1
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2416.7 1384 86.7
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2416.3 1384 87.4
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2416.0 1388 86.3
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2415.6 1384 86.9
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2415.6 1386 86.9
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2414.8 1385 86.4
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2413.6 1384 86.2
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2412.9 1384 87.3
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2412.5 1384 87.2
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2412.5 1384 86.4
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2410.2 1384 86.6
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2409.8 1384 86.1
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2409.0 1385 86.6
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2408.3 1386 86.5
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2408.3 1386 85.9
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2407.1 1388 86.4
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2406.7 1384 86.3
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2405.9 1388 86.5
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2405.6 1384 86.1
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2404.0 1401 85.7
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2404.0 1384 86.6
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2403.6 1384 86.5
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2400.5 1383 86.3
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2398.6 1386 86.1
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2398.6 1384 85.8
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2397.5 1384 86.1
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2397.1 1384 85.5
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2396.7 1384 86.6
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2396.7 1382 85.5
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2395.9 1386 86.3
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2395.5 1382 86.0
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2395.2 1384 86.4
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2394.8 1384 85.8
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2394.4 1385 85.6
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2393.2 1384 86.3
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2392.8 1385 86.4
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2392.5 1384 86.2
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2391.7 1384 85.2
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2391.3 1385 86.3
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2391.3 1385 85.9
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2390.9 1384 86.1
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2390.5 1386 85.9
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2389.8 1384 86.2
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2389.8 1384 86.2
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2388.2 1385 85.7
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2387.8 1386 85.6
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2382.8 1384 86.3
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2382.1 1399 84.7
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2380.1 1446 82.3
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2377.1 1411 84.6
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2373.2 1385 84.8
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2373.2 1385 85.0
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2372.0 1384 84.8
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2365.5 1397 84.0
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2364.3 1384 86.0
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2363.6 1336 87.1
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2350.1 1385 84.5
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2349.3 1385 84.4
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2340.1 1355 85.5
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2331.6 1385 84.4
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2314.7 1386 83.5
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2308.1 1384 83.8
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2301.6 1383 82.7
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2300.0 1385 82.8
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2285.4 1338 83.6
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2268.4 1384 81.9
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2255.3 1349 82.0
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2234.9 1384 81.2
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2234.1 1410 80.3
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2191.4 1259 86.9
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2180.2 1260 86.1
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2174.1 1332 79.9
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2162.5 1263 85.7
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2161.3 1343 78.8
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2151.3 1336 78.6
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2151.3 1336 78.6
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2150.9 1336 78.2
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2121.3 1338 77.1
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2118.6 1347 79.7
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1904.0 1121 84.5
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1897.5 1382 72.4
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1881.3 1109 84.2
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1868.2 1333 68.8
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1845.9 1347 67.6
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1812.3 1402 69.9
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1652.1 914 88.1
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1639.4 913 87.7
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1607.8 896 88.6
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1469.1 809 89.1
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1460.3 808 88.5
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1139.0 690 82.2
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1093.6 676 81.1
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 1.9e-302 1043.1 670 79.7
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 1.4e-292 1010.4 571 85.1
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 3.5e-264 916.0 1202 44.2
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 1.8e-252 877.1 590 74.9
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 3.1e-244 849.7 472 92.2
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 3.1e-220 770.0 472 82.8
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 6.6e-215 752.3 472 80.9
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 4.3e-214 749.6 473 80.8
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 1.6e-200 704.5 398 85.7
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 4.8e-173 613.2 1380 32.3
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 7.7e-155 552.7 1466 29.8
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 4.6e-107 394.0 1274 27.6
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 2.2e-85 322.0 175 89.7
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 7.2e-68 263.8 150 84.7
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.5e-57 229.6 123 87.8
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 8.0e-43 180.6 107 86.0
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 5.7e-41 174.5 197 51.3
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 5.9e-30 137.9 139 51.1
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 1.9e-28 132.9 99 68.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 1.8e-26 126.3 91 71.4
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 1.1e-18 100.5 60 81.7


User provided reference genes

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