Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 1.1e-125 453.4 239 100.0
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 5.3e-120 434.5 243 95.1
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 3.3e-114 415.2 243 90.5
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 7.2e-109 397.5 243 86.0
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 7.2e-109 397.5 243 86.4
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 6.1e-108 394.4 239 85.8
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 6.1e-108 394.4 239 85.8
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 7.9e-108 394.0 243 85.6
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 1.8e-107 392.9 243 85.2
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 1.8e-107 392.9 243 85.6
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 3.0e-107 392.1 239 86.6
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 3.9e-107 391.7 242 85.1
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 3.9e-107 391.7 243 85.6
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 5.2e-107 391.3 243 85.2
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 1.5e-106 389.8 239 84.9
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 2.6e-106 389.0 242 85.1
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 5.7e-106 387.9 240 85.8
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 5.7e-106 387.9 240 85.8
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 5.0e-102 374.8 241 83.4
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 5.0e-102 374.8 241 83.4
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 4.8e-97 358.2 258 74.8
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 4.1e-96 355.1 246 78.9
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 2.8e-84 315.8 263 65.8
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 3.6e-76 288.9 244 61.9
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 1.2e-74 283.9 244 60.2
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 5.0e-70 268.5 244 58.2
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 1.6e-68 263.5 237 59.1
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 2.1e-68 263.1 244 58.2
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 1.4e-67 260.4 239 56.5
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 1.4e-67 260.4 244 55.7
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 1.4e-67 260.4 248 56.0
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 1.4e-67 260.4 242 56.6
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 3.1e-67 259.2 242 56.6
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 4.0e-67 258.8 242 55.4
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 5.2e-67 258.5 245 55.1
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 6.8e-67 258.1 242 57.0
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 6.8e-67 258.1 242 56.2
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 8.9e-67 257.7 238 58.0
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 8.9e-67 257.7 245 54.7
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 8.9e-67 257.7 245 54.7
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.5e-66 256.9 242 57.0
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 2.6e-66 256.1 254 53.9
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 3.4e-66 255.8 246 54.5
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 3.4e-66 255.8 245 55.9
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 4.4e-66 255.4 245 55.9
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 4.4e-66 255.4 245 55.9
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 4.4e-66 255.4 244 54.5
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 4.4e-66 255.4 248 54.8
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 5.8e-66 255.0 205 62.9
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 5.8e-66 255.0 240 55.8
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 5.8e-66 255.0 249 53.8
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 7.5e-66 254.6 275 53.8
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 7.5e-66 254.6 250 55.6
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 9.8e-66 254.2 236 58.5
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 9.8e-66 254.2 249 54.6
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.3e-65 253.8 248 56.5
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 1.3e-65 253.8 246 56.5
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.3e-65 253.8 250 55.2
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 1.3e-65 253.8 250 54.8
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 1.3e-65 253.8 249 54.2
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 2.9e-65 252.7 250 55.2
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 4.9e-65 251.9 250 54.8
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 4.9e-65 251.9 242 53.7
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 8.3e-65 251.1 242 54.1
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 1.1e-64 250.8 249 52.6
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 1.1e-64 250.8 237 56.5
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.4e-64 250.4 241 54.8
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 1.4e-64 250.4 249 54.6
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 1.9e-64 250.0 250 54.0
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 5.4e-64 248.4 238 54.2
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 5.4e-64 248.4 245 53.1
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 5.4e-64 248.4 236 55.5
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 5.4e-64 248.4 249 52.2
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 7.0e-64 248.1 248 55.2
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 9.2e-64 247.7 250 52.8
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 9.2e-64 247.7 247 53.0
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 9.2e-64 247.7 236 55.1
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 9.2e-64 247.7 244 53.3
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 1.2e-63 247.3 242 54.1
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 1.6e-63 246.9 192 63.0
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 2.7e-63 246.1 246 54.9
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 4.6e-63 245.4 248 52.0
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 4.6e-63 245.4 247 53.0
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 7.8e-63 244.6 246 52.0
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 1.0e-62 244.2 243 52.7
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 1.0e-62 244.2 250 51.6
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 1.7e-62 243.4 233 54.9
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 3.0e-62 242.7 246 52.4
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 3.0e-62 242.7 237 54.0
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 3.9e-62 242.3 212 59.0
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 5.0e-62 241.9 235 55.3
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 6.6e-62 241.5 237 53.6
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 6.6e-62 241.5 242 52.9
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 8.6e-62 241.1 242 52.9
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 1.1e-61 240.7 242 52.9
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 1.9e-61 240.0 223 56.5
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.9e-61 240.0 251 52.6
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 3.3e-61 239.2 255 52.9
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 3.3e-61 239.2 234 53.8
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 5.6e-61 238.4 272 50.4
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 1.2e-60 237.3 242 52.9
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 1.6e-60 236.9 238 52.1
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 2.8e-60 236.1 248 52.0
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 4.7e-60 235.3 248 51.2
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 8.1e-60 234.6 235 52.8
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 8.1e-60 234.6 244 52.5
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 1.4e-59 233.8 244 50.8
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 1.4e-59 233.8 203 56.7
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 1.8e-59 233.4 251 49.4
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 1.8e-59 233.4 238 52.5
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 2.3e-59 233.0 244 50.4
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 2.3e-59 233.0 239 50.2
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 3.1e-59 232.6 256 50.4
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 4.0e-59 232.3 220 55.5
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 5.2e-59 231.9 247 50.6
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 2.0e-58 229.9 238 50.4
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 2.6e-58 229.6 142 82.4
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 4.4e-58 228.8 268 50.0
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 9.9e-58 227.6 231 51.9
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.3e-57 227.3 249 49.4
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 2.9e-57 226.1 219 53.4
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 2.9e-57 226.1 233 53.2
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 2.9e-57 226.1 200 53.5
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 4.1e-56 222.2 218 54.1
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 4.1e-56 222.2 245 48.6
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 5.4e-56 221.9 249 49.8
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 3.5e-55 219.2 202 55.0
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 1.0e-54 217.6 247 49.0
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 5.6e-53 211.8 192 53.6
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 7.3e-53 211.5 192 53.6
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.6e-52 209.1 245 46.9
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 3.6e-52 209.1 205 49.8
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 8.1e-52 208.0 192 53.1
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 1.2e-50 204.1 233 49.4
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 3.4e-50 202.6 254 45.7
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 3.4e-50 202.6 234 47.4
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 9.9e-50 201.1 250 50.4
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 8.4e-49 198.0 110 92.7
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 4.6e-47 192.2 347 36.9
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 7.8e-47 191.4 203 47.8
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 5.1e-46 188.7 213 45.5
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 6.6e-46 188.3 191 52.9
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 4.3e-45 185.7 359 35.4
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 9.6e-45 184.5 201 52.2
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 3.2e-40 169.5 194 46.4
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.2e-39 167.5 221 38.9
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.2e-39 167.5 214 40.7
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 6.0e-39 165.2 193 49.2
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 8.7e-38 161.4 244 42.6
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.1e-37 161.0 290 37.6
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 2.0e-34 150.2 198 42.4
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 2.9e-33 146.4 187 40.6
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.6e-31 140.6 144 51.4
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 6.0e-31 138.7 160 47.5
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 1.5e-29 134.0 116 54.3
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 1.9e-29 133.7 148 47.3
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 3.3e-29 132.9 98 65.3
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 1.2e-26 124.4 156 41.7
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.2e-26 124.4 189 34.4
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 8.4e-25 118.2 151 43.0
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 8.4e-25 118.2 184 34.8
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 1.9e-24 117.1 67 88.1
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 1.6e-23 114.0 67 86.6
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 1.5e-21 107.5 192 33.3
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 4.3e-21 105.9 86 60.5
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 7.4e-21 105.1 183 31.1
Cre16.g680000 Chlamydomonas reinhardtii HOM05D003972 ORTHO05D004609 4.8e-20 102.4 212 30.7
Sc10g0000050 Simmondsia chinensis HOM05D003972 ORTHO05D004609 4.8e-20 102.4 72 70.8
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 8.2e-20 101.7 72 68.1
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 3.1e-19 99.8 136 48.5
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 1.2e-18 97.8 141 41.1
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 2.3e-14 83.6 79 51.9
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.3e-12 77.8 70 52.9
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.3e-12 77.8 74 48.6
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.7e-12 76.3 70 50.0
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 4.8e-12 75.9 70 50.0
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 6.3e-12 75.5 102 43.1
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 5.9e-10 68.9 61 55.7
MCO11G452 Micromonas commoda HOM05D003160 ORTHO05D005967 1.3e-09 67.8 189 25.9
vmacro04777 Vaccinium macrocarpon HOM05D003160 ORTHO05D005967 2.2e-09 67.0 214 28.0
BolC4t26421H Brassica oleracea HOM05D003972 ORTHO05D004609 1.1e-08 64.7 55 61.8
Pp3c23_11680 Physcomitrium patens HOM05D003160 ORTHO05D005967 9.4e-08 61.6 223 21.5
PRCOL_00001524 Prasinoderma coloniale HOM05D003160 ORTHO05D005967 3.6e-07 59.7 159 25.2
SEGI_06406 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 7.9e-07 58.5 223 22.9
DCAR_017152 Daucus carota HOM05D003160 ORTHO05D005967 8.8e-06 55.1 174 22.4


User provided reference genes

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