Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 8.8e-80 300.1 135 100.0
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 2.0e-79 298.9 135 99.3
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 3.4e-79 298.1 135 99.3
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 1.1e-77 293.1 135 96.3
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 2.4e-77 292.0 135 96.3
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 2.4e-77 292.0 135 96.3
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 9.1e-77 290.0 135 95.6
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 7.7e-76 287.0 135 94.1
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 7.7e-76 287.0 135 94.1
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 1.2e-73 279.6 135 92.6
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 1.6e-73 279.3 135 91.9
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 8.0e-73 276.9 136 91.9
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 6.8e-72 273.9 136 90.4
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 6.8e-72 273.9 136 90.4
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 1.2e-71 273.1 142 88.7
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 2.2e-70 268.9 135 88.9
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 2.0e-68 262.3 135 85.2
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 1.4e-61 239.6 135 76.3
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 5.4e-61 237.7 135 75.6
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 5.4e-61 237.7 135 76.3
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 7.0e-61 237.3 135 75.6
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 9.2e-61 236.9 135 75.6
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 1.2e-60 236.5 135 74.8
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.2e-60 236.5 135 75.6
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 7.8e-60 233.8 135 74.8
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 2.3e-59 232.3 135 74.1
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 3.9e-59 231.5 135 74.8
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 5.0e-59 231.1 127 78.0
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 6.6e-59 230.7 135 74.1
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 1.1e-58 229.9 147 70.1
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 1.9e-58 229.2 135 73.3
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 4.3e-58 228.0 148 68.2
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 4.3e-58 228.0 135 72.6
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 5.6e-58 227.6 134 72.4
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 5.6e-58 227.6 123 80.5
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.2e-57 226.5 135 71.9
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 1.6e-57 226.1 135 72.6
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 2.1e-57 225.7 147 68.0
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 4.7e-57 224.6 135 71.9
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 8.0e-57 223.8 135 71.9
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 8.0e-57 223.8 123 79.7
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 1.0e-56 223.4 135 71.1
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 1.8e-56 222.6 123 78.9
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.8e-56 222.6 135 71.1
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 2.3e-56 222.2 128 73.4
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 3.1e-56 221.9 148 66.9
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.1e-56 221.9 137 73.0
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.1e-56 221.9 135 71.1
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 3.1e-56 221.9 137 73.0
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 3.1e-56 221.9 123 75.6
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.0e-56 221.5 137 73.0
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.0e-56 221.5 150 64.7
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 5.2e-56 221.1 123 78.9
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 5.2e-56 221.1 123 78.9
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 8.9e-56 220.3 145 64.1
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.2e-55 219.9 135 69.6
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 1.2e-55 219.9 148 65.5
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 1.5e-55 219.5 123 74.8
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 1.5e-55 219.5 130 71.5
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 2.0e-55 219.2 123 76.4
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 2.6e-55 218.8 135 71.1
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.6e-55 218.8 152 64.5
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 2.6e-55 218.8 145 66.9
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 7.5e-55 217.2 133 70.7
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 7.5e-55 217.2 119 77.3
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 9.8e-55 216.9 135 69.6
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 1.3e-54 216.5 123 70.7
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 3.7e-54 214.9 122 73.8
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 4.9e-54 214.5 149 63.8
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 8.3e-54 213.8 122 73.8
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 8.3e-54 213.8 135 69.6
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 8.3e-54 213.8 123 74.0
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.1e-53 213.4 128 71.9
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 1.1e-53 213.4 153 62.7
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 5.4e-53 211.1 131 70.2
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 7.0e-53 210.7 120 70.8
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 9.2e-53 210.3 122 73.0
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.2e-52 209.9 128 71.1
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 1.2e-52 209.9 132 68.2
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.2e-52 209.9 133 70.7
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.0e-52 209.1 133 70.7
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 2.0e-52 209.1 117 74.4
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 2.0e-52 209.1 145 65.5
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 2.7e-52 208.8 132 68.9
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 4.6e-52 208.0 127 70.1
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 4.6e-52 208.0 133 67.7
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 4.6e-52 208.0 135 68.1
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 6.0e-52 207.6 133 69.9
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 7.8e-52 207.2 123 70.7
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 1.0e-51 206.8 132 70.5
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 2.3e-51 205.7 123 67.5
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.3e-51 205.7 153 60.1
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 3.0e-51 205.3 123 67.5
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 3.9e-51 204.9 126 67.5
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 3.9e-51 204.9 126 67.5
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 8.6e-51 203.8 122 69.7
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 1.1e-50 203.4 159 56.0
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 2.5e-50 202.2 123 67.5
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 4.3e-50 201.4 138 63.8
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 3.6e-49 198.4 133 66.9
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 4.0e-48 194.9 124 66.9
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 2.0e-47 192.6 135 65.9
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.6e-47 192.2 120 66.7
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 4.4e-47 191.4 124 68.5
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 1.9e-45 186.0 159 55.3
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 2.4e-45 185.7 130 63.8
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 9.2e-45 183.7 159 54.7
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.2e-44 183.3 113 67.3
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.2e-44 183.3 113 67.3
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 4.0e-40 168.3 96 71.9
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 1.2e-39 166.8 174 47.1
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 2.0e-39 166.0 106 67.9
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.1e-37 160.2 117 57.3
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 3.2e-37 158.7 124 57.3
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 2.1e-36 156.0 124 55.6
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 3.6e-33 145.2 136 47.1
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 7.6e-31 137.5 144 45.8
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 8.7e-27 124.0 84 63.1
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 3.3e-26 122.1 70 72.9
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 2.0e-23 112.8 59 81.4
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 3.4e-23 112.1 58 79.3
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 1.5e-18 96.7 135 44.4
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 1.4e-16 90.1 105 44.8
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.4e-16 89.4 57 64.9
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 5.8e-15 84.7 81 46.9
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.7e-14 83.2 91 45.1
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 2.9e-14 82.4 80 46.2
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.9e-14 81.6 80 46.2
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 2.4e-13 79.3 49 67.3
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 7.9e-12 74.3 69 49.3
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 7.9e-12 74.3 111 36.9
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 3.9e-11 72.0 102 38.2
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 5.1e-11 71.6 44 65.9
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 7.4e-10 67.8 40 67.5
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 9.6e-10 67.4 49 57.1
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 8.2e-09 64.3 53 52.8
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 2.4e-08 62.8 57 49.1
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 2.4e-08 62.8 50 56.0
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 2.4e-08 62.8 50 56.0


User provided reference genes

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