Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 7.0e-156 553.9 278 100.0
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 8.6e-138 493.8 281 90.7
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 3.4e-134 481.9 281 88.3
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 4.9e-133 478.0 280 87.1
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 2.7e-131 472.2 281 87.2
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 1.3e-130 469.9 279 86.7
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 1.1e-129 466.8 279 86.0
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 2.5e-129 465.7 279 86.0
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 1.4e-127 459.9 279 84.9
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 2.3e-127 459.1 281 84.3
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 8.9e-127 457.2 281 84.3
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 5.8e-126 454.5 280 81.8
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 7.5e-126 454.1 236 95.8
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 6.4e-125 451.1 279 82.8
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 1.6e-123 446.4 280 81.8
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 1.6e-120 436.4 281 82.2
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 4.2e-108 395.2 309 71.5
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 2.1e-91 339.7 249 67.9
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 6.0e-91 338.2 252 66.7
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.1e-90 335.1 243 68.3
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 4.3e-89 332.0 266 62.4
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 9.6e-89 330.9 245 67.8
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 1.3e-88 330.5 259 64.5
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 2.1e-88 329.7 256 65.2
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 2.8e-88 329.3 268 61.6
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 4.8e-88 328.6 237 67.1
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 1.1e-87 327.4 239 68.2
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 1.1e-87 327.4 274 62.0
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 5.3e-87 325.1 231 68.4
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 9.0e-87 324.3 228 68.4
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 9.0e-87 324.3 257 63.8
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 1.5e-86 323.6 242 63.6
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 2.0e-86 323.2 246 64.6
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.6e-86 322.8 239 68.2
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 5.8e-86 321.6 244 67.2
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 5.8e-86 321.6 271 60.5
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 9.9e-86 320.9 236 65.7
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 1.7e-85 320.1 247 64.4
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 2.9e-85 319.3 233 66.5
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 3.8e-85 318.9 237 64.1
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 1.1e-84 317.4 256 65.6
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.1e-84 317.4 272 61.8
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 1.4e-84 317.0 253 62.8
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 1.4e-84 317.0 241 66.8
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 2.5e-84 316.2 237 65.0
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.2e-84 315.8 231 66.2
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 3.2e-84 315.8 234 66.2
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.2e-84 315.5 233 65.7
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 5.5e-84 315.1 254 63.4
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 9.3e-84 314.3 241 66.0
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.1e-83 313.2 240 64.2
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 2.7e-83 312.8 235 64.7
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 2.7e-83 312.8 290 58.6
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 3.5e-83 312.4 268 62.3
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 3.5e-83 312.4 235 65.5
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 3.5e-83 312.4 244 64.3
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 6.0e-83 311.6 235 65.5
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 6.0e-83 311.6 312 53.8
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 7.9e-83 311.2 228 67.1
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 7.9e-83 311.2 237 63.7
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.3e-82 309.7 228 66.7
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 3.0e-82 309.3 257 62.6
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 8.7e-82 307.8 273 59.3
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 1.9e-81 306.6 230 65.2
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 2.5e-81 306.2 276 59.1
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 3.3e-81 305.8 234 62.4
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 4.3e-81 305.4 233 65.2
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 5.6e-81 305.1 270 58.9
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 7.4e-81 304.7 285 55.4
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 7.4e-81 304.7 230 65.2
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 1.6e-80 303.5 241 63.1
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 1.6e-80 303.5 213 70.4
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 3.7e-80 302.4 263 60.1
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 4.8e-80 302.0 268 58.6
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 5.3e-79 298.5 242 62.0
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 6.9e-79 298.1 234 64.5
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 6.9e-79 298.1 262 58.8
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 9.0e-79 297.7 233 63.9
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 1.2e-78 297.4 265 57.7
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 1.2e-78 297.4 305 53.1
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 2.0e-78 296.6 245 59.6
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 4.5e-78 295.4 245 60.0
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 2.2e-77 293.1 273 57.5
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 6.5e-77 291.6 259 58.3
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 8.4e-77 291.2 262 55.3
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 8.4e-77 291.2 256 57.0
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 3.2e-76 289.3 272 55.1
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 5.5e-76 288.5 269 56.5
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 6.0e-75 285.0 235 61.7
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 7.9e-75 284.6 229 62.4
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 1.0e-74 284.3 215 65.1
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.3e-74 283.9 256 59.4
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 5.1e-74 282.0 249 58.6
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.5e-73 280.4 255 57.3
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 2.5e-73 279.6 232 59.9
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 2.5e-73 279.6 243 59.7
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 4.3e-73 278.9 255 57.6
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 5.7e-73 278.5 275 53.8
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 7.4e-73 278.1 216 64.4
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 1.3e-72 277.3 231 60.6
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 2.2e-72 276.6 234 59.0
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 2.8e-72 276.2 238 58.4
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 3.7e-72 275.8 230 60.9
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 2.4e-71 273.1 241 58.5
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 3.1e-71 272.7 222 60.8
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 4.1e-71 272.3 231 60.2
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 6.9e-71 271.6 197 67.5
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.5e-70 270.4 260 53.8
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 1.0e-69 267.7 260 53.5
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 1.3e-69 267.3 224 60.3
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 1.3e-69 267.3 235 58.7
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 6.5e-69 265.0 237 59.9
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.0e-66 257.7 217 61.3
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 2.5e-65 253.1 196 62.8
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 7.4e-65 251.5 285 51.6
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 9.1e-63 244.6 227 55.9
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 2.6e-62 243.0 200 61.5
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 5.0e-61 238.8 228 53.9
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 8.5e-61 238.0 273 48.7
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.1e-60 237.7 234 53.0
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 1.4e-58 230.7 209 57.4
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 3.3e-57 226.1 250 48.8
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 3.3e-57 226.1 220 50.5
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.3e-56 224.2 146 74.7
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.7e-56 223.8 273 46.9
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 4.8e-56 222.2 143 71.3
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 4.8e-56 222.2 248 51.6
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 3.1e-55 219.5 144 72.2
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.5e-54 217.2 264 45.8
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.5e-54 215.7 261 47.1
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 7.7e-54 214.9 171 59.6
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 3.8e-53 212.6 141 71.6
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 5.7e-49 198.7 152 62.5
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.1e-44 184.5 197 50.8
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 9.4e-44 181.4 156 57.1
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 2.1e-43 180.3 233 42.5
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 5.2e-42 175.6 174 50.0
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 1.2e-41 174.5 173 50.9
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 5.7e-41 172.2 136 65.4
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 1.8e-34 150.6 95 72.6
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 2.0e-33 147.1 129 59.7
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 2.8e-32 143.3 219 38.4
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 1.4e-26 124.4 122 54.9
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 5.2e-26 122.5 97 61.9
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 1.3e-24 117.9 241 32.4
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.1e-23 114.8 119 51.3
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 5.9e-22 109.0 86 65.1
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 8.6e-21 105.1 236 30.9
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 4.3e-20 102.8 94 56.4
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.0e-09 67.4 60 53.3
Cfa021669 Carpinus fangiana HOM05D004983 ORTHO05D005847 2.4e-07 60.5 181 29.8
Ca_28882_v3 Cicer arietinum L. HOM05D004983 ORTHO05D005847 3.2e-07 60.1 207 26.6
Hund25310 Selenicereus undatus HOM05D004983 ORTHO05D005847 1.6e-06 57.8 179 31.8


User provided reference genes

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