Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 2.6e-300 1034.6 531 100.0
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 4.0e-293 1010.7 529 97.7
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 8.6e-280 966.5 529 92.4
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 6.6e-272 940.3 528 91.1
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 6.8e-269 930.2 529 88.7
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 2.6e-268 928.3 534 88.0
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 3.4e-268 927.9 534 88.0
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 2.9e-267 924.9 529 88.7
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 3.8e-267 924.5 529 88.3
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.6e-265 919.1 542 87.3
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 1.0e-264 916.4 529 88.3
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.2e-249 866.3 529 83.7
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 2.7e-249 865.1 531 83.6
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 3.9e-248 861.3 530 83.4
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 1.5e-228 796.2 452 89.4
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 6.5e-227 790.8 529 78.3
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 7.7e-220 767.3 530 74.5
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 5.0e-195 684.9 529 66.4
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 6.5e-195 684.5 532 63.7
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.2e-191 673.7 527 63.9
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 5.9e-188 661.4 526 62.5
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 1.0e-187 660.6 516 64.0
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 1.5e-186 656.8 512 64.5
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 2.5e-186 656.0 531 62.0
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 2.8e-185 652.5 531 62.0
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 3.0e-184 649.0 524 62.6
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 2.2e-182 642.9 523 60.2
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 1.1e-181 640.6 531 60.5
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 1.6e-180 636.7 512 63.3
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 1.6e-180 636.7 529 59.9
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 2.0e-180 636.3 507 62.9
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 1.7e-179 633.3 519 62.0
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 1.9e-178 629.8 512 61.3
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 2.5e-178 629.4 531 60.6
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 4.3e-178 628.6 504 63.9
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 5.6e-178 628.2 528 60.6
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 5.6e-178 628.2 511 62.0
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 7.3e-178 627.9 521 61.0
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 9.5e-178 627.5 529 61.1
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.2e-177 627.1 531 61.4
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 2.8e-177 625.9 531 61.4
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 4.7e-177 625.2 531 61.2
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 4.7e-177 625.2 516 61.4
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 8.0e-177 624.4 513 61.2
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 3.1e-176 622.5 524 61.3
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 4.0e-176 622.1 519 60.1
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 2.0e-175 619.8 524 59.5
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 9.8e-175 617.5 508 61.4
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 1.4e-173 613.6 518 59.7
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 9.2e-173 610.9 523 58.7
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 2.0e-172 609.8 534 59.7
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.6e-172 608.6 510 59.8
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 4.6e-172 608.6 507 60.4
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 4.6e-172 608.6 525 59.2
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 6.0e-172 608.2 507 59.8
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 6.0e-172 608.2 526 58.9
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 7.8e-172 607.8 508 59.8
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 1.3e-171 607.1 519 58.8
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 3.0e-171 605.9 530 60.2
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.5e-170 602.8 509 59.7
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.2e-169 600.5 517 59.4
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 2.8e-169 599.4 440 65.5
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 3.6e-169 599.0 528 57.2
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.6e-169 599.0 531 57.8
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 4.0e-168 595.5 450 64.9
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 2.0e-167 593.2 544 56.2
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 2.6e-167 592.8 516 57.9
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 5.8e-167 591.7 535 56.6
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.3e-166 590.5 509 58.9
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 4.1e-165 585.5 511 57.9
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 7.1e-165 584.7 515 58.1
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 7.1e-165 584.7 510 58.4
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 2.1e-164 583.2 515 57.3
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 6.0e-164 581.6 503 59.8
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 6.6e-163 578.2 524 56.9
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 8.6e-163 577.8 717 45.5
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 9.5e-162 574.3 500 58.2
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 6.2e-161 571.6 509 57.6
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 5.2e-160 568.5 531 55.7
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 5.2e-160 568.5 512 56.4
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.0e-159 566.6 516 54.7
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 3.7e-158 562.4 534 54.5
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 1.9e-157 560.1 487 58.7
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 9.2e-157 557.8 522 55.7
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 2.1e-156 556.6 518 56.0
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 2.1e-156 556.6 452 60.2
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 4.6e-156 555.4 440 61.8
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 7.8e-156 554.7 504 56.3
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 5.1e-155 552.0 566 52.5
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 6.6e-155 551.6 518 55.8
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 5.4e-149 531.9 533 52.5
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 4.0e-144 515.8 529 51.2
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 5.5e-133 478.8 533 48.4
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 4.9e-126 455.7 544 45.4
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 2.1e-121 440.3 402 57.0
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 4.5e-119 432.6 391 55.2
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 9.3e-117 424.9 281 73.7
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.0e-110 404.8 531 44.4
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 1.3e-102 377.9 357 54.3
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.3e-97 361.3 377 48.8
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 1.1e-96 358.2 466 44.2
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 8.5e-94 348.6 463 41.3
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 3.0e-91 340.1 231 71.0
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 4.4e-90 336.3 432 43.5
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 8.2e-89 332.0 498 39.8
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.2e-77 293.1 285 53.3
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 5.4e-72 276.2 408 40.0
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 6.6e-70 269.2 273 50.9
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.2e-68 265.0 309 42.7
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 3.0e-67 260.4 359 36.5
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 9.5e-61 238.8 513 32.7
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 2.9e-49 200.7 141 70.2
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 3.7e-49 200.3 141 71.6
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.1e-40 172.2 176 51.1
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 5.6e-37 159.8 117 69.2
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 5.6e-37 159.8 107 73.8
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.1e-36 157.9 123 60.2
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 7.3e-29 132.9 112 56.2
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.8e-27 128.3 277 34.7
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 3.5e-23 114.0 131 43.5
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 7.9e-23 112.8 100 50.0
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 1.0e-22 112.5 216 33.3
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.1e-21 109.0 108 47.2
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 2.8e-20 104.4 80 55.0
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 3.7e-20 104.0 80 55.0
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 1.4e-19 102.1 82 53.7
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.7e-17 95.1 455 25.3
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 7.9e-15 86.3 87 44.8
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 6.7e-14 83.2 173 37.6
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 6.7e-14 83.2 105 38.1
C03p06490 Brassica napus HOM05D005072 ORTHO05D006209 6.9e-11 73.2 61 62.3
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 3.4e-10 70.9 38 86.8
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 3.2e-08 64.3 243 23.5
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 3.2e-08 64.3 138 32.6
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 1.6e-07 62.0 58 56.9
Oeu032047.1 Olea europaea HOM05D005072 ORTHO05D006209 1.0e-06 59.3 94 40.4
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 6.7e-06 56.6 52 50.0
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 6.7e-06 56.6 37 64.9


User provided reference genes

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