Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G12100 Arabidopsis thaliana HOM05D007410 ORTHO05D009500 4.1e-164 582.8 817 100.0
Carub.0006s1061 Capsella rubella HOM05D007410 ORTHO05D009500 2.9e-101 374.0 821 87.6
Sp6g31520 Schrenkiella parvula HOM05D007410 ORTHO05D009500 9.4e-92 342.4 824 85.6
BcaNung06328 Brassica carinata HOM05D007410 ORTHO05D009500 6.7e-82 309.7 217 77.0
A10p25700 Brassica napus HOM05D007410 ORTHO05D009500 1.5e-81 308.5 817 83.7
BraA10t44635Z Brassica rapa HOM05D007410 ORTHO05D009500 8.2e-80 302.8 209 78.0
BolC9t59308H Brassica oleracea HOM05D007410 ORTHO05D009500 8.5e-77 292.7 212 75.5
C09p64770 Brassica napus HOM05D007410 ORTHO05D009500 8.8e-74 282.7 209 74.6
CARHR201020 Cardamine hirsuta HOM05D007410 ORTHO05D009500 3.4e-73 280.8 196 81.6
Aa31LG3G15130 Aethionema arabicum HOM05D007410 ORTHO05D009500 7.5e-65 253.1 211 68.2
AL6G44470 Arabidopsis lyrata HOM05D007410 ORTHO05D009500 1.7e-37 162.2 86 94.2
Thhalv10015810m.g Eutrema salsugineum HOM05D007410 ORTHO05D009500 1.7e-37 162.2 96 83.3
TWI60G0552 Tripterygium wilfordii HOM05D007410 ORTHO05D009500 3.5e-30 137.9 174 48.3
Dinv39608 Davidia involucrata HOM05D007410 ORTHO05D009500 8.1e-27 126.7 177 39.0
MD12G1016300 Malus domestica HOM05D007410 ORTHO05D009500 8.1e-27 126.7 187 46.0
RcHm_v2.0_Chr3g0471971 Rosa chinensis HOM05D007410 ORTHO05D009500 2.4e-26 125.2 182 44.0
MD14G1014400 Malus domestica HOM05D007410 ORTHO05D009500 4.0e-26 124.4 176 46.0
Thecc.05G080100 Theobroma cacao HOM05D007410 ORTHO05D009500 8.9e-26 123.2 117 48.7
HanXRQChr17g0535541 Helianthus annuus HOM05D007410 ORTHO05D009500 1.5e-25 122.5 143 42.7
Eucgr.A01557 Eucalyptus grandis HOM05D007410 ORTHO05D009500 2.6e-25 121.7 150 46.7
CSS0026121 Camellia sinensis var. sinensis HOM05D007410 ORTHO05D009500 3.4e-25 121.3 178 37.1
Prupe.7G119000 Prunus persica HOM05D007410 ORTHO05D009500 1.7e-24 119.0 179 43.6
Dinv34010 Davidia involucrata HOM05D007410 ORTHO05D009500 7.1e-23 113.6 168 44.6
Nitab4.5_0001290g0100 Nicotiana tabacum HOM05D007410 ORTHO05D009500 9.3e-23 113.2 154 43.5
Nitab4.5_0026813g0010 Nicotiana tabacum HOM05D007410 ORTHO05D009500 9.3e-23 113.2 163 42.9
FAN02G1401 Fragaria x ananassa HOM05D007410 ORTHO05D009500 2.1e-22 112.1 155 44.5
QL02p025248 Quercus lobata HOM05D007410 ORTHO05D009500 3.5e-22 111.3 193 39.9
Cfa016527 Carpinus fangiana HOM05D007410 ORTHO05D009500 4.6e-22 110.9 209 34.9
Nitab4.5_0005621g0120 Nicotiana tabacum HOM05D007410 ORTHO05D009500 4.6e-22 110.9 154 43.5
Oeu023854.1 Olea europaea HOM05D007410 ORTHO05D009500 6.0e-22 110.5 208 37.0
FvH4_6g17750 Fragaria vesca HOM05D007410 ORTHO05D009500 6.6e-21 107.1 152 42.8
Haze_19526 Corylus avellana HOM05D007410 ORTHO05D009500 1.5e-20 105.9 200 34.5
FAN14G2442 Fragaria x ananassa HOM05D007410 ORTHO05D009500 1.5e-20 105.9 151 42.4
FAN09G1720 Fragaria x ananassa HOM05D007410 ORTHO05D009500 1.9e-20 105.5 155 43.2
Sed0018174 Sechium edule HOM05D007410 ORTHO05D009500 2.5e-20 105.1 145 41.4
Peaxi162Scf00802g00013 Petunia axillaris HOM05D007410 ORTHO05D009500 1.6e-19 102.4 153 39.9
MELO3C006839.2 Cucumis melo HOM05D007410 ORTHO05D009500 2.1e-19 102.1 150 39.3
CsaV3_3G016400 Cucumis sativus L. HOM05D007410 ORTHO05D009500 2.1e-19 102.1 151 39.7
FAN05G1927 Fragaria x ananassa HOM05D007410 ORTHO05D009500 8.1e-19 100.1 155 41.9
PGSC0003DMG400004719 Solanum tuberosum HOM05D007410 ORTHO05D009500 1.1e-18 99.8 163 39.9
ClCG05G007520 Citrullus lanatus HOM05D007410 ORTHO05D009500 2.4e-18 98.6 139 38.1
Aqoxy1G00955 Aquilegia oxysepala HOM05D007410 ORTHO05D009500 3.1e-18 98.2 210 34.3
CAN.G575.91 Capsicum annuum HOM05D007410 ORTHO05D009500 5.3e-18 97.4 175 32.0
Hma1.2p1_0084F.1_g043130 Hydrangea macrophylla HOM05D007410 ORTHO05D009500 5.3e-18 97.4 124 45.2
Sopen12g034470 Solanum pennellii HOM05D007410 ORTHO05D009500 5.3e-18 97.4 163 38.7
SGA_v2.0_scaffold75G24801 Striga asiatica HOM05D007410 ORTHO05D009500 6.9e-18 97.1 179 36.9
Atru.BG.129.p Acer truncatum HOM05D007410 ORTHO05D009500 1.2e-17 96.3 131 43.5
Potri.010G249800 Populus trichocarpa HOM05D007410 ORTHO05D009500 1.2e-17 96.3 161 39.1
Sabra10G0194300 Salix brachista HOM05D001909 ORTHO05D007079 1.2e-17 96.3 173 34.1
HanXRQChr17g0534281 Helianthus annuus HOM05D007410 ORTHO05D009500 2.6e-17 95.1 163 36.8
Solyc12g099840.1 Solanum lycopersicum HOM05D007410 ORTHO05D009500 2.6e-17 95.1 201 34.3
Gohir.A01G210000 Gossypium hirsutum HOM05D007410 ORTHO05D009500 4.5e-17 94.4 169 34.9
FAN09G0790 Fragaria x ananassa HOM05D007410 ORTHO05D009500 7.6e-17 93.6 177 28.8
Duzib093G0520 Durio zibethinus HOM05D007410 ORTHO05D009500 9.9e-17 93.2 172 34.3
Phvul.001G185900 Phaseolus vulgaris HOM05D007410 ORTHO05D009500 9.9e-17 93.2 150 41.3
DCAR_020784 Daucus carota HOM05D007410 ORTHO05D009500 1.7e-16 92.4 150 36.0
VMungo1383G0444 Vigna mungo HOM05D007410 ORTHO05D009500 1.7e-16 92.4 152 40.8
Gohir.D01G198900 Gossypium hirsutum HOM05D007410 ORTHO05D009500 2.9e-16 91.7 169 33.7
Gorai.002G243300 Gossypium raimondii HOM05D007410 ORTHO05D009500 2.9e-16 91.7 169 33.7
Rhsim03G0082200 Rhododendron simsii HOM05D007410 ORTHO05D009500 4.9e-16 90.9 159 39.0
Oeu058028.1 Olea europaea HOM05D007410 ORTHO05D009500 3.2e-15 88.2 136 40.4
CANSAT80G0494 Cannabis sativa HOM05D007410 ORTHO05D009500 4.2e-15 87.8 178 31.5
DCAR_013956 Daucus carota HOM05D007410 ORTHO05D009500 7.1e-15 87.0 186 33.3
COL.COLO4_29826 Corchorus olitorius HOM05D007410 ORTHO05D009500 9.3e-15 86.7 85 47.1
Migut.J00989 Erythranthe guttata HOM05D007410 ORTHO05D009500 9.3e-15 86.7 149 39.6
Medtr7g103600 Medicago truncatula HOM05D007410 ORTHO05D009500 1.6e-14 85.9 160 31.2
TAR365G0607 Trochodendron aralioides HOM05D007410 ORTHO05D009500 1.6e-14 85.9 179 38.5
Glyma.19G190733 Glycine max HOM05D007410 ORTHO05D009500 3.5e-14 84.7 163 30.7
PGR004G1775 Punica granatum HOM05D007410 ORTHO05D009500 3.5e-14 84.7 118 48.3
Lalb_Chr01g0018371 Lupinus albus HOM05D007410 ORTHO05D009500 2.3e-13 82.0 163 28.8
Atru.chr12.1036 Acer truncatum HOM05D007410 ORTHO05D009500 5.1e-13 80.9 94 44.7
EL10Ac1g00861 Beta vulgaris HOM05D007410 ORTHO05D009500 1.1e-12 79.7 153 36.6
Ca_08961_v3 Cicer arietinum L. HOM05D007410 ORTHO05D009500 1.5e-12 79.3 160 30.0
Psat2g007640 Pisum sativum HOM05D007410 ORTHO05D009500 3.3e-12 78.2 160 29.4
Atru.chr12.1030 Acer truncatum HOM05D007410 ORTHO05D009500 4.3e-12 77.8 149 38.9
AUR62013683 Chenopodium quinoa HOM05D007410 ORTHO05D009500 4.3e-12 77.8 174 29.9
Manes.09G058000 Manihot esculenta HOM05D007410 ORTHO05D009500 9.6e-12 76.6 172 29.7
TPR.G28359 Trifolium pratense HOM05D007410 ORTHO05D009500 9.6e-12 76.6 160 30.0
Glyma.03G190300 Glycine max HOM05D007410 ORTHO05D009500 2.1e-11 75.5 134 40.3
CiPaw.09G007900 Carya illinoinensis HOM05D007410 ORTHO05D009500 2.8e-11 75.1 193 33.7
Sc18g0006010 Simmondsia chinensis HOM05D007410 ORTHO05D009500 2.8e-11 75.1 124 37.1
Cc06_g05130 Coffea canephora HOM05D007410 ORTHO05D009500 3.6e-11 74.7 151 33.1
AUR62004183 Chenopodium quinoa HOM05D007410 ORTHO05D009500 8.1e-11 73.6 151 37.1
Lj1g0017625 Lotus japonicus HOM05D007410 ORTHO05D009500 1.8e-10 72.4 161 27.3
Ciclev10033972m.g Citrus clementina HOM05D007410 ORTHO05D009500 1.2e-09 69.7 92 41.3
CAN.G805.2 Capsicum annuum HOM05D005764 ORTHO05D006600 1.5e-09 69.3 89 33.7
SGA_v2.0_scaffold40G15416 Striga asiatica HOM05D007410 ORTHO05D009500 1.5e-09 69.3 166 33.7
Cpa.g.sc117.70 Carica papaya HOM05D007410 ORTHO05D009500 4.5e-09 67.8 177 27.1
Solyc10g049570.3 Solanum lycopersicum HOM05D007173 ORTHO05D009151 7.6e-09 67.0 142 31.0
Peaxi162Scf00231g00042 Petunia axillaris HOM05D007173 ORTHO05D009151 1.3e-08 66.2 142 31.0
Migut.D00798 Erythranthe guttata HOM05D007173 ORTHO05D009151 2.9e-08 65.1 143 32.2
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 3.8e-08 64.7 160 26.9
Nn8g39918 Nelumbo nucifera HOM05D007410 ORTHO05D009500 3.8e-08 64.7 152 34.9
Nitab4.5_0005425g0010 Nicotiana tabacum HOM05D005764 ORTHO05D006600 6.4e-08 63.9 76 36.8
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 8.4e-08 63.5 160 26.9
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 8.4e-08 63.5 160 26.9
HanXRQChr02g0058171 Helianthus annuus HOM05D007410 ORTHO05D009500 8.4e-08 63.5 139 25.9
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 8.4e-08 63.5 125 31.2
Lsat_1_v5_gn_5_91740 Lactuca sativa HOM05D002825 ORTHO05D003824 1.1e-07 63.2 154 21.4
MSTRG.18528 Avicennia marina HOM05D007173 ORTHO05D009151 1.4e-07 62.8 130 30.0
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 1.4e-07 62.8 142 30.3
Glyma.19G190667 Glycine max HOM05D007410 ORTHO05D009500 1.9e-07 62.4 121 38.8
Lj9E304T4 Lonicera japonica HOM05D007410 ORTHO05D009500 1.9e-07 62.4 111 36.0
PSO339G3988 Papaver somniferum HOM05D007212 ORTHO05D009094 1.9e-07 62.4 139 30.2
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 1.9e-07 62.4 110 30.0
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.9e-07 62.4 160 32.5
FAN09G2418 Fragaria x ananassa HOM05D000855 ORTHO05D008530 2.4e-07 62.0 156 26.9
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 2.4e-07 62.0 142 29.6
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 2.4e-07 62.0 117 30.8
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 3.2e-07 61.6 159 27.7
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 4.2e-07 61.2 161 26.7
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 4.2e-07 61.2 154 26.0
VMungo1383G3229 Vigna mungo HOM05D026119 ORTHO05D030504 4.2e-07 61.2 85 35.3
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 5.5e-07 60.8 161 26.1
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 5.5e-07 60.8 161 26.7
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 5.5e-07 60.8 155 27.1
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 5.5e-07 60.8 155 29.0
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 7.1e-07 60.5 142 27.5
ECA236G5119 Erigeron canadensis HOM05D000744 ORTHO05D000332 7.1e-07 60.5 151 26.5
Lsat_1_v5_gn_3_126181 Lactuca sativa HOM05D007173 ORTHO05D009151 7.1e-07 60.5 142 29.6
Lj2g0003627 Lotus japonicus HOM05D006999 ORTHO05D008936 7.1e-07 60.5 138 29.0
Manes.12G158300 Manihot esculenta HOM05D007173 ORTHO05D009151 9.3e-07 60.1 142 28.2
Nitab4.5_0006992g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 9.3e-07 60.1 76 36.8
SHI27720 Sapria himalayana HOM05D007410 ORTHO05D009500 9.3e-07 60.1 100 40.0
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 1.2e-06 59.7 152 27.6
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 1.2e-06 59.7 153 24.8
CDE01G0670 Ceratophyllum demersum HOM05D003192 ORTHO05D003596 1.2e-06 59.7 151 29.8
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 1.6e-06 59.3 119 26.9
AT5G39710 Arabidopsis thaliana HOM05D006858 ORTHO05D008767 1.6e-06 59.3 89 34.8
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 1.6e-06 59.3 129 29.5
PSO675G6037 Papaver somniferum HOM05D010315 ORTHO05D011532 1.6e-06 59.3 144 31.9
Sp1g39910 Schrenkiella parvula HOM05D002453 ORTHO05D008746 1.6e-06 59.3 93 29.0
Lsat_1_v5_gn_7_77221 Lactuca sativa HOM05D002825 ORTHO05D003824 2.1e-06 58.9 125 22.4
Oeu014607.1 Olea europaea HOM05D007173 ORTHO05D009151 2.1e-06 58.9 108 33.3
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 2.1e-06 58.9 160 26.2
SMO270G0123 Selaginella moellendorffii HOM05D000001 ORTHO05D376091 2.1e-06 58.9 133 27.8
vmacro02795 Vaccinium macrocarpon HOM05D008810 ORTHO05D010971 2.1e-06 58.9 117 27.4
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 2.7e-06 58.5 158 27.2
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 2.7e-06 58.5 116 31.9
Sc24g0004220 Simmondsia chinensis HOM05D000300 ORTHO05D000383 2.7e-06 58.5 155 24.5
Aa31LG11G14510 Aethionema arabicum HOM05D000424 ORTHO05D000355 3.5e-06 58.2 106 27.4
Ah.11g043880 Amaranthus hybridus HOM05D007251 ORTHO05D009266 3.5e-06 58.2 107 29.0
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 4.6e-06 57.8 155 27.1
ECA236G4782 Erigeron canadensis HOM05D002825 ORTHO05D003824 4.6e-06 57.8 154 20.1
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 6.0e-06 57.4 112 28.6
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 6.0e-06 57.4 112 28.6
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 6.0e-06 57.4 112 28.6
Cc02_g29420 Coffea canephora HOM05D007173 ORTHO05D009151 6.0e-06 57.4 143 29.4
PGR044G1927 Punica granatum HOM05D000891 ORTHO05D011021 6.0e-06 57.4 144 25.0
Actinidia09797 Actinidia chinensis HOM05D005764 ORTHO05D006600 7.9e-06 57.0 92 33.7
Actinidia11327 Actinidia chinensis HOM05D007410 ORTHO05D019476 7.9e-06 57.0 142 29.6
Cfa017505 Carpinus fangiana HOM05D000855 ORTHO05D008530 7.9e-06 57.0 157 29.3
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 7.9e-06 57.0 157 29.3
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 7.9e-06 57.0 155 27.1
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 7.9e-06 57.0 174 24.7
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 7.9e-06 57.0 140 25.0
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 7.9e-06 57.0 159 27.7
Prupe.5G142900 Prunus persica HOM05D005764 ORTHO05D006600 7.9e-06 57.0 150 28.7


User provided reference genes

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