Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 1.6e-269 932.2 477 100.0
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 5.4e-265 917.1 476 98.3
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 4.6e-264 914.1 476 97.7
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 7.8e-264 913.3 476 97.7
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 3.9e-263 911.0 476 97.1
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 3.9e-263 911.0 476 97.1
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 3.9e-263 911.0 476 97.1
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 8.6e-263 909.8 476 96.8
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 8.6e-263 909.8 476 96.8
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 2.1e-261 905.2 476 96.8
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 2.8e-261 904.8 476 96.8
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 5.8e-259 897.1 476 95.8
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 2.2e-258 895.2 476 95.6
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 3.1e-252 874.8 511 88.6
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 1.6e-248 862.4 505 88.9
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 7.3e-246 853.6 460 93.9
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 4.7e-245 850.9 480 92.3
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 1.4e-244 849.4 476 92.0
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 1.4e-244 849.4 483 89.4
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 3.9e-239 831.2 476 87.6
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 1.1e-238 829.7 464 89.4
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 3.3e-238 828.2 468 88.7
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 4.3e-238 827.8 460 89.8
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 7.3e-238 827.0 476 87.8
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.3e-237 826.2 476 88.0
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.6e-237 825.9 484 85.7
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 2.8e-237 825.1 484 85.5
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 1.4e-236 822.8 476 87.4
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.8e-236 822.4 460 88.3
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 1.8e-236 822.4 481 86.5
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 5.3e-236 820.8 484 85.3
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 5.3e-236 820.8 476 86.1
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 9.0e-236 820.1 467 87.2
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.0e-235 818.9 478 85.4
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 3.4e-235 818.1 477 86.6
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.3e-234 816.2 468 87.6
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.2e-234 815.5 463 88.1
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 2.2e-234 815.5 495 82.8
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 2.9e-234 815.1 465 86.7
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 6.4e-234 813.9 474 85.7
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 6.4e-234 813.9 471 86.4
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 8.4e-234 813.5 476 85.5
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 1.1e-233 813.1 462 87.4
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 1.4e-233 812.8 470 86.4
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 1.4e-233 812.8 476 85.3
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 4.2e-233 811.2 470 86.0
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 4.2e-233 811.2 469 85.5
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 1.6e-232 809.3 470 86.2
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.6e-232 809.3 474 85.9
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 2.1e-232 808.9 465 87.1
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 3.5e-232 808.1 459 88.2
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 4.6e-232 807.7 478 85.1
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 6.0e-232 807.4 464 87.1
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 6.0e-232 807.4 476 85.3
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 7.9e-232 807.0 478 83.9
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 7.9e-232 807.0 474 84.4
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 1.0e-231 806.6 469 85.1
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 1.0e-231 806.6 469 85.5
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 1.3e-231 806.2 459 88.0
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 1.3e-231 806.2 473 85.2
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.7e-231 805.8 464 85.3
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 5.1e-231 804.3 459 87.1
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 1.1e-230 803.1 477 84.1
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 2.5e-230 802.0 459 87.6
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.3e-230 801.2 464 86.0
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 9.6e-230 800.0 462 86.4
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 9.6e-230 800.0 471 85.6
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 1.6e-229 799.3 472 83.9
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 2.8e-229 798.5 472 85.2
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 3.6e-229 798.1 476 84.2
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 4.8e-229 797.7 471 85.4
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 6.2e-229 797.3 476 84.5
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 8.1e-229 797.0 475 84.8
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.1e-228 796.6 465 84.7
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.4e-228 796.2 470 84.9
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 1.4e-228 796.2 478 84.1
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-228 796.2 476 83.8
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.4e-228 796.2 476 84.2
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 1.8e-228 795.8 476 84.2
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 2.4e-228 795.4 490 81.8
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.4e-228 795.4 476 83.6
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 4.0e-228 794.7 470 84.5
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 5.3e-228 794.3 465 84.9
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 5.3e-228 794.3 456 86.8
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 5.8e-227 790.8 474 83.5
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 2.2e-226 788.9 468 84.0
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-225 786.2 486 82.5
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 3.2e-225 785.0 468 82.7
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.2e-225 785.0 486 81.9
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 6.0e-224 780.8 478 82.0
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.8e-223 779.2 479 80.8
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 7.4e-222 773.9 465 83.2
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 6.2e-221 770.8 462 82.7
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 8.1e-221 770.4 464 82.3
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 1.8e-220 769.2 474 81.4
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 3.4e-219 765.0 473 80.5
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 3.4e-219 765.0 479 80.6
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.2e-218 762.3 465 82.4
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 3.8e-218 761.5 465 81.3
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 8.7e-215 750.4 476 80.9
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 3.7e-213 745.0 464 80.6
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.6e-208 729.6 462 76.4
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 2.3e-207 725.7 405 89.6
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 7.4e-206 720.7 479 74.3
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 9.7e-206 720.3 468 74.6
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 8.2e-205 717.2 467 74.3
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.6e-200 703.0 397 86.6
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 7.4e-198 694.1 435 79.3
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 9.7e-198 693.7 465 77.8
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.4e-193 679.9 402 84.1
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 3.1e-188 662.1 460 70.9
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 5.0e-186 654.8 470 68.9
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 4.4e-182 641.7 357 87.1
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.7e-181 639.8 470 70.2
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.7e-181 639.8 475 66.7
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 8.2e-181 637.5 357 87.1
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 1.7e-178 629.8 464 69.0
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 4.7e-176 621.7 445 72.6
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 1.8e-175 619.8 450 66.4
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 7.5e-174 614.4 464 70.9
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.6e-168 596.7 467 69.2
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 6.3e-165 584.7 318 89.0
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 6.4e-157 558.1 342 84.8
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 1.1e-153 547.4 472 65.0
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 2.2e-149 533.1 367 70.6
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 4.3e-145 518.8 471 58.4
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.8e-143 511.5 458 58.7
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 4.4e-142 508.8 459 58.6
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.8e-142 508.4 459 58.4
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 4.9e-141 505.4 375 68.8
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.1e-140 504.2 470 58.9
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 1.7e-138 496.9 331 73.7
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 2.1e-120 436.8 486 47.9
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.3e-117 427.6 456 51.5
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 5.8e-102 375.6 511 41.1
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.8e-98 364.0 437 48.5
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 1.6e-96 357.5 465 48.2
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 1.8e-82 310.8 403 41.9
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.7e-75 286.2 315 53.0
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.2e-70 271.6 171 83.0
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.7e-61 241.1 256 51.6
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 7.0e-55 219.2 410 38.3
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 6.8e-50 202.6 143 72.7
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.8e-48 197.2 120 75.8
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 7.3e-44 182.6 105 82.9
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.4e-42 178.3 124 77.4
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 4.9e-40 169.9 106 84.0
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 1.3e-37 161.8 117 75.2
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 1.7e-32 144.8 76 94.7
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.9e-28 131.3 104 74.0
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.6e-27 128.3 91 76.9
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 5.4e-23 113.2 71 77.5
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 4.6e-22 110.2 71 83.1
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 1.5e-20 105.1 63 84.1
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 7.3e-20 102.8 86 62.8
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 3.4e-17 94.0 54 87.0
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 1.7e-16 91.7 50 86.0
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.2e-14 85.5 53 81.1
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 2.7e-14 84.3 98 53.1
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 3.0e-13 80.9 63 68.3
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.3e-12 76.3 49 75.5
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 4.7e-11 73.6 43 83.7
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 2.0e-09 68.2 55 60.0
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 6.4e-08 63.2 52 59.6
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 3.2e-07 60.8 46 60.9
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 9.3e-07 59.3 50 58.0


User provided reference genes

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