Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G11810 Arabidopsis thaliana HOM05D006276 ORTHO05D007724 5.7e-175 617.5 307 100.0
Thhalv10014178m.g Eutrema salsugineum HOM05D006276 ORTHO05D007724 2.4e-149 532.3 310 85.2
Carub.0006s1034 Capsella rubella HOM05D006276 ORTHO05D007724 5.4e-149 531.2 307 85.0
Sp6g31790 Schrenkiella parvula HOM05D006276 ORTHO05D007724 4.7e-145 518.1 307 83.1
BraA03t09860Z Brassica rapa HOM05D006276 ORTHO05D007724 1.3e-139 500.0 307 81.8
BraA10t44656Z Brassica rapa HOM05D006276 ORTHO05D007724 4.7e-137 491.5 310 81.3
C03p06010 Brassica napus HOM05D006276 ORTHO05D007724 1.4e-136 490.0 307 81.1
A03p05210 Brassica napus HOM05D006276 ORTHO05D007724 1.8e-136 489.6 307 79.8
A10p25940 Brassica napus HOM05D006276 ORTHO05D007724 2.6e-135 485.7 310 81.3
BolC9t59330H Brassica oleracea HOM05D006276 ORTHO05D007724 8.3e-134 480.7 310 79.7
BolC3t13112H Brassica oleracea HOM05D006276 ORTHO05D007724 4.6e-132 474.9 307 78.5
C09p65020 Brassica napus HOM05D006276 ORTHO05D007724 2.3e-131 472.6 310 78.4
BcaC04g19193 Brassica carinata HOM05D006276 ORTHO05D007724 4.3e-130 468.4 312 77.6
AL6G22560 Arabidopsis lyrata HOM05D006276 ORTHO05D007724 2.1e-129 466.1 248 93.1
CARHR201350 Cardamine hirsuta HOM05D006276 ORTHO05D007724 9.8e-127 457.2 261 88.1
Aa31LG3G15390 Aethionema arabicum HOM05D006276 ORTHO05D007724 8.3e-126 454.1 319 75.2
THA.LOC104811244 Tarenaya hassleriana HOM05D006276 ORTHO05D007724 1.3e-118 430.3 311 70.1
BcaB01g05452 Brassica carinata HOM05D006276 ORTHO05D007724 4.1e-117 425.2 307 73.3
Hma1.2p1_0482F.1_g162490 Hydrangea macrophylla HOM05D006276 ORTHO05D007724 9.9e-95 350.9 315 55.2
RcHm_v2.0_Chr6g0310851 Rosa chinensis HOM05D006276 ORTHO05D007724 1.2e-92 344.0 317 57.1
RcHm_v2.0_Chr6g0290791 Rosa chinensis HOM05D006276 ORTHO05D007724 3.5e-92 342.4 317 56.2
Atru.chr7.1056 Acer truncatum HOM05D006276 ORTHO05D007724 1.3e-89 334.0 319 53.9
Manes.16G079900 Manihot esculenta HOM05D006276 ORTHO05D007724 1.6e-89 333.6 318 54.1
COL.COLO4_21052 Corchorus olitorius HOM05D006276 ORTHO05D007724 4.8e-89 332.0 317 56.8
FvH4_2g31970 Fragaria vesca HOM05D006276 ORTHO05D007724 4.8e-89 332.0 317 55.2
MD15G1060500 Malus domestica HOM05D006276 ORTHO05D007724 8.1e-89 331.3 313 55.0
QL02p001268 Quercus lobata HOM05D006276 ORTHO05D007724 1.4e-88 330.5 319 53.3
Potri.006G230000 Populus trichocarpa HOM05D006276 ORTHO05D007724 5.3e-88 328.6 318 53.1
Duzib168G0463 Durio zibethinus HOM05D006276 ORTHO05D007724 2.0e-87 326.6 318 54.4
Eucgr.C03044 Eucalyptus grandis HOM05D006276 ORTHO05D007724 2.0e-87 326.6 322 53.4
Thecc.09G053300 Theobroma cacao HOM05D006276 ORTHO05D007724 7.6e-87 324.7 323 54.5
GSVIVG01035412001 Vitis vinifera HOM05D006276 ORTHO05D007724 7.6e-87 324.7 324 52.2
TWI34G0536 Tripterygium wilfordii HOM05D006276 ORTHO05D007724 3.8e-86 322.4 315 54.3
Sabra06G0178200 Salix brachista HOM05D006276 ORTHO05D007724 8.4e-86 321.2 365 47.9
Ciclev10008931m.g Citrus clementina HOM05D006276 ORTHO05D007724 1.1e-85 320.9 323 52.9
CiPaw.16G028900 Carya illinoinensis HOM05D006276 ORTHO05D007724 2.4e-85 319.7 320 54.7
Dinv27981 Davidia involucrata HOM05D006276 ORTHO05D007724 3.2e-85 319.3 316 52.8
Gorai.009G045400 Gossypium raimondii HOM05D006276 ORTHO05D007724 4.2e-85 318.9 318 53.5
arahy.Tifrunner.gnm1.ann1.C6FL8N Arachis hypogaea HOM05D006276 ORTHO05D007724 7.1e-85 318.2 318 53.5
arahy.Tifrunner.gnm1.ann1.PS3ZFP Arachis hypogaea HOM05D006276 ORTHO05D007724 1.6e-84 317.0 319 53.6
TAR626G0576 Trochodendron aralioides HOM05D006276 ORTHO05D007724 1.6e-84 317.0 324 50.0
Rhsim07G0142500 Rhododendron simsii HOM05D006276 ORTHO05D007724 4.6e-84 315.5 314 51.9
PGSC0003DMG400025517 Solanum tuberosum HOM05D006276 ORTHO05D007724 4.6e-84 315.5 314 50.6
Cc08_g10550 Coffea canephora HOM05D006276 ORTHO05D007724 6.0e-84 315.1 312 51.9
MD08G1060900 Malus domestica HOM05D006276 ORTHO05D007724 6.0e-84 315.1 311 54.3
Solyc11g070020.3 Solanum lycopersicum HOM05D006276 ORTHO05D007724 3.0e-83 312.8 314 50.6
Sopen11g028700 Solanum pennellii HOM05D006276 ORTHO05D007724 3.0e-83 312.8 314 50.6
Phvul.001G034700 Phaseolus vulgaris HOM05D006276 ORTHO05D007724 3.9e-83 312.4 312 53.8
Glyma.17G229400 Glycine max HOM05D006276 ORTHO05D007724 1.1e-82 310.8 311 52.4
Peaxi162Scf00247g00720 Petunia axillaris HOM05D006276 ORTHO05D007724 1.1e-82 310.8 313 51.1
VMungo0647G0182 Vigna mungo HOM05D006276 ORTHO05D007724 3.3e-82 309.3 312 52.6
CsaV3_2G025580 Cucumis sativus L. HOM05D006276 ORTHO05D007724 5.6e-82 308.5 317 51.4
Lj7A273T8 Lonicera japonica HOM05D006276 ORTHO05D007724 5.6e-82 308.5 313 51.1
Nitab4.5_0003550g0010 Nicotiana tabacum HOM05D006276 ORTHO05D007724 5.6e-82 308.5 314 51.0
CANSAT25G3436 Cannabis sativa HOM05D006276 ORTHO05D007724 7.4e-82 308.1 312 53.2
Medtr1g016410 Medicago truncatula HOM05D006276 ORTHO05D007724 1.3e-81 307.4 320 51.6
Actinidia01190 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.6e-81 307.0 318 49.4
TAR383G0425 Trochodendron aralioides HOM05D006276 ORTHO05D007724 1.6e-81 307.0 324 49.4
DCAR_004430 Daucus carota HOM05D006276 ORTHO05D007724 2.1e-81 306.6 320 49.7
Nitab4.5_0001107g0140 Nicotiana tabacum HOM05D006276 ORTHO05D007724 3.7e-81 305.8 314 50.3
Lsat_1_v5_gn_3_24381 Lactuca sativa HOM05D006276 ORTHO05D007724 8.1e-81 304.7 315 54.3
PSO210G2260 Papaver somniferum HOM05D006276 ORTHO05D007724 3.1e-80 302.8 318 49.7
ClCG08G017020 Citrullus lanatus HOM05D006276 ORTHO05D007724 1.5e-79 300.4 317 50.2
FAN24G2654 Fragaria x ananassa HOM05D006276 ORTHO05D007724 2.0e-79 300.1 392 44.9
TPR.G13142 Trifolium pratense HOM05D006276 ORTHO05D007724 4.5e-79 298.9 315 51.4
Sed0014483 Sechium edule HOM05D006276 ORTHO05D007724 7.6e-79 298.1 317 49.2
PSO210G3453 Papaver somniferum HOM05D006276 ORTHO05D007724 1.0e-78 297.7 320 48.4
Lj5g0000642 Lotus japonicus HOM05D006276 ORTHO05D007724 2.2e-78 296.6 310 50.3
Sed0008348 Sechium edule HOM05D006276 ORTHO05D007724 6.5e-78 295.0 315 49.2
Actinidia18190 Actinidia chinensis HOM05D006276 ORTHO05D007724 5.5e-77 292.0 311 48.9
HanXRQChr17g0538201 Helianthus annuus HOM05D006276 ORTHO05D007724 7.1e-77 291.6 312 50.0
Migut.E01562 Erythranthe guttata HOM05D006276 ORTHO05D007724 9.3e-77 291.2 309 47.6
Ca_13170_v3 Cicer arietinum L. HOM05D006276 ORTHO05D007724 1.2e-76 290.8 316 50.0
Gohir.D05G044300 Gossypium hirsutum HOM05D006276 ORTHO05D007724 3.5e-76 289.3 315 50.5
Lalb_Chr14g0367711 Lupinus albus HOM05D006276 ORTHO05D007724 6.0e-76 288.5 322 49.4
Aqoxy5G01259 Aquilegia oxysepala HOM05D006276 ORTHO05D007724 1.0e-75 287.7 319 48.3
Actinidia14712 Actinidia chinensis HOM05D006276 ORTHO05D007724 2.3e-75 286.6 322 48.4
Oeu003983.2 Olea europaea HOM05D006276 ORTHO05D007724 5.1e-75 285.4 313 48.9
SGA_v2.0_scaffold169G38688 Striga asiatica HOM05D006276 ORTHO05D007724 5.1e-75 285.4 312 48.1
SalBow1G4959 Salvia bowleyana HOM05D006276 ORTHO05D007724 6.7e-75 285.0 325 48.0
Hund19457 Selenicereus undatus HOM05D006276 ORTHO05D007724 2.5e-74 283.1 312 49.4
FAN15G3491 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.4e-72 277.3 436 39.9
SHI18737 Sapria himalayana HOM05D006276 ORTHO05D007724 1.4e-72 277.3 314 47.8
Haze_18196 Corylus avellana HOM05D006276 ORTHO05D007724 5.3e-72 275.4 318 49.4
EL10Ac2g03891 Beta vulgaris HOM05D006276 ORTHO05D007724 1.3e-70 270.8 317 46.1
MSTRG.11659 Avicennia marina HOM05D006276 ORTHO05D007724 1.7e-70 270.4 313 47.0
PSO478G1664 Papaver somniferum HOM05D006276 ORTHO05D007724 6.5e-70 268.5 333 45.3
AUR62022071 Chenopodium quinoa HOM05D006276 ORTHO05D007724 4.6e-68 262.3 313 45.7
PSO782G4309 Papaver somniferum HOM05D006276 ORTHO05D007724 1.8e-67 260.4 310 47.7
Cpa.g.sc7.176 Carica papaya HOM05D006276 ORTHO05D007724 4.8e-65 252.3 228 57.5
HPP92_004831 Vanilla planifolia HOM05D006276 ORTHO05D007724 2.4e-64 250.0 319 45.1
AUR62009155 Chenopodium quinoa HOM05D006276 ORTHO05D007724 5.9e-63 245.4 342 42.1
PGR044G2277 Punica granatum HOM05D006276 ORTHO05D007724 1.0e-62 244.6 308 47.7
Cfa017950 Carpinus fangiana HOM05D006276 ORTHO05D007724 2.9e-62 243.0 241 51.5
MELO3C010755.2 Cucumis melo HOM05D006276 ORTHO05D007724 1.9e-61 240.4 312 46.2
vmacro14246 Vaccinium macrocarpon HOM05D006276 ORTHO05D007724 2.7e-60 236.5 267 46.1
Sc09g0009760 Simmondsia chinensis HOM05D006276 ORTHO05D007724 2.0e-58 230.3 290 42.8
Prupe.1G412500 Prunus persica HOM05D006276 ORTHO05D007724 7.4e-58 228.4 256 50.0
Gohir.A05G042600 Gossypium hirsutum HOM05D006276 ORTHO05D007724 1.7e-57 227.3 258 50.0
CDE06G0120 Ceratophyllum demersum HOM05D006276 ORTHO05D007724 3.7e-57 226.1 327 42.5
Glyma.14G094000 Glycine max HOM05D006276 ORTHO05D007724 3.1e-56 223.0 225 51.1
CiPaw.15G039400 Carya illinoinensis HOM05D006276 ORTHO05D007724 4.1e-56 222.6 320 40.0
CSS0027263 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 1.3e-54 217.6 267 45.3
FAN20G3006 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.7e-54 217.2 291 43.0
Nn3g20166 Nelumbo nucifera HOM05D006276 ORTHO05D007724 5.5e-53 212.2 275 42.5
ATR0564G292 Amborella trichopoda HOM05D006276 ORTHO05D007724 2.1e-52 210.3 298 41.3
FAN27G2524 Fragaria x ananassa HOM05D006276 ORTHO05D007724 7.9e-52 208.4 389 35.7
SEGI_30057 Sequoiadendron giganteum HOM05D006276 ORTHO05D007724 3.0e-51 206.5 308 38.0
Os02g0135600 Oryza sativa ssp. japonica HOM05D006276 ORTHO05D007724 3.9e-51 206.1 342 38.3
Zm00001eb231620 Zea mays HOM05D006276 ORTHO05D007724 4.4e-50 202.6 339 38.3
Mapoly0103s0015 Marchantia polymorpha HOM05D006276 ORTHO05D007724 1.1e-48 198.0 322 37.0
AagrBONN_evm.TU.Sc2ySwM_117.3789 Anthoceros agrestis HOM05D006276 ORTHO05D007724 5.3e-48 195.7 330 36.1
Pp3c1_29470 Physcomitrium patens HOM05D006276 ORTHO05D007724 1.6e-47 194.1 321 38.0
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 5.9e-47 192.2 220 48.2
Pp3c14_20160 Physcomitrium patens HOM05D006276 ORTHO05D007724 7.2e-45 185.3 327 38.2
Ah.10g034420 Amaranthus hybridus HOM05D006276 ORTHO05D007724 1.6e-44 184.1 309 35.6
Lj7P276T14 Lonicera japonica HOM05D006276 ORTHO05D007724 1.6e-44 184.1 163 55.8
CDE04G1132 Ceratophyllum demersum HOM05D000032 ORTHO05D002561 9.1e-40 168.3 280 37.9
SMO117G0325 Selaginella moellendorffii HOM05D006276 ORTHO05D007724 9.1e-40 168.3 310 35.5
Psat6g020720 Pisum sativum HOM05D006276 ORTHO05D007724 2.9e-38 163.3 197 44.7
PSO210G7329 Papaver somniferum HOM05D006276 ORTHO05D007724 4.4e-34 149.4 236 39.4
Thecc.08G113900 Theobroma cacao HOM05D006276 ORTHO05D007724 1.7e-30 137.5 240 38.8
CARHR201360 Cardamine hirsuta HOM05D006276 ORTHO05D007724 2.0e-15 87.4 46 87.0
Oeu018645.1 Olea europaea HOM05D006276 ORTHO05D007724 1.7e-14 84.3 55 70.9
CSS0023315 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 1.4e-11 74.7 46 69.6
CSS0029180 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 1.4e-11 74.7 46 69.6
Lj7A276T16 Lonicera japonica HOM05D006276 ORTHO05D007724 4.9e-09 66.2 57 52.6


User provided reference genes

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