Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 4.3e-289 997.3 505 100.0
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 1.6e-251 872.5 510 87.6
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 3.4e-241 838.2 506 84.6
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 9.5e-236 820.1 506 83.4
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 2.3e-221 772.3 506 79.2
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.5e-182 642.1 516 68.4
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 5.3e-178 628.2 511 67.1
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 4.5e-177 625.2 511 65.4
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 1.1e-175 620.5 514 66.3
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 3.2e-175 619.0 511 65.0
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 1.8e-173 613.2 515 65.8
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 2.4e-85 320.5 529 38.4
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 4.5e-84 316.2 516 37.8
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 4.9e-83 312.8 522 39.3
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 1.1e-82 311.6 531 39.0
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.2e-81 308.1 521 39.7
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.1e-78 297.4 480 39.4
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.1e-77 295.0 489 38.9
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.3e-75 288.1 413 40.9
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 3.8e-75 286.6 531 37.9
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 6.4e-75 285.8 485 37.1
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 5.5e-74 282.7 549 34.1
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 9.3e-74 282.0 517 35.8
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 2.3e-72 277.3 374 42.8
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 2.1e-70 270.8 516 36.2
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 8.1e-70 268.9 505 35.6
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 9.0e-69 265.4 510 35.5
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 4.5e-68 263.1 491 36.0
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 4.5e-68 263.1 482 36.5
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 7.6e-68 262.3 372 41.7
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 1.7e-67 261.2 508 34.8
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.9e-67 259.6 512 35.5
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.9e-66 257.7 505 34.3
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.5e-66 257.3 493 36.5
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 7.1e-66 255.8 519 34.7
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 9.3e-66 255.4 554 32.7
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 1.2e-65 255.0 493 35.3
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 1.6e-65 254.6 491 34.8
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 3.5e-65 253.4 406 36.7
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 6.0e-65 252.7 506 34.4
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 7.9e-65 252.3 493 36.3
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 1.3e-64 251.5 532 34.2
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 3.9e-64 250.0 496 34.9
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.8e-61 241.1 534 34.8
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.8e-61 241.1 511 35.2
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 2.4e-61 240.7 358 39.7
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 9.0e-61 238.8 483 35.0
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.2e-60 238.4 508 34.4
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.2e-60 238.4 542 33.0
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 2.6e-60 237.3 497 33.4
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 2.6e-60 237.3 521 30.5
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.7e-59 234.6 510 34.7
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 8.5e-59 232.3 521 34.0
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 8.5e-59 232.3 521 34.0
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 2.5e-58 230.7 507 33.3
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 6.1e-57 226.1 486 34.2
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.9e-56 223.4 381 37.3
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 1.1e-55 221.9 526 33.5
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.5e-55 221.5 481 33.1
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 3.3e-55 220.3 481 33.1
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 5.7e-55 219.5 569 31.3
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 1.3e-54 218.4 487 30.8
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 6.3e-54 216.1 406 34.5
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 9.1e-53 212.2 525 32.0
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 1.5e-52 211.5 520 31.2
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 1.0e-51 208.8 455 35.4
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 2.9e-51 207.2 387 36.4
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 3.8e-51 206.8 549 30.1
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 8.5e-51 205.7 501 31.3
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.1e-50 205.3 515 29.9
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.4e-50 204.9 409 33.0
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 3.2e-50 203.8 499 30.9
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 5.5e-50 203.0 498 32.5
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.2e-49 201.8 518 30.3
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.2e-49 201.8 534 30.7
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 2.1e-49 201.1 513 30.6
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 2.1e-49 201.1 498 31.5
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 4.6e-49 199.9 528 31.2
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 3.3e-47 193.7 517 29.6
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 2.8e-46 190.7 522 28.7
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 3.7e-46 190.3 413 31.0
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 3.7e-46 190.3 366 33.6
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 5.3e-45 186.4 472 30.7
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 5.3e-45 186.4 477 30.4
BcaB06g29645 Brassica carinata HOM05D003538 ORTHO05D018603 6.9e-45 186.0 250 48.4
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 9.1e-45 185.7 502 30.5
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.5e-44 184.9 479 28.6
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.0e-44 184.5 506 29.2
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.6e-44 184.1 519 28.9
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.6e-44 184.1 519 28.9
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 1.3e-43 181.8 268 40.3
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.7e-43 181.4 496 28.0
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 2.9e-43 180.6 522 28.9
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 8.5e-43 179.1 527 28.8
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 8.5e-43 179.1 487 28.5
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.1e-42 178.7 496 30.0
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 1.1e-42 178.7 403 30.3
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 3.2e-42 177.2 493 28.2
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 4.2e-42 176.8 458 30.3
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.2e-41 175.3 460 29.1
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 1.6e-41 174.9 515 29.3
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.1e-41 174.5 524 28.8
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.7e-41 173.3 460 28.9
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 6.1e-41 172.9 407 29.5
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 6.7e-40 169.5 506 26.1
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 8.8e-40 169.1 395 31.6
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.3e-39 167.2 522 26.6
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 5.7e-39 166.4 517 28.2
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.2e-38 164.5 443 30.7
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 2.8e-38 164.1 430 28.1
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 6.3e-38 162.9 499 27.3
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 1.1e-37 162.2 519 30.3
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 2.4e-37 161.0 491 27.3
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 3.1e-37 160.6 477 27.7
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 3.1e-37 160.6 474 28.9
BcaC06g31881 Brassica carinata HOM05D000161 ORTHO05D000111 4.1e-37 160.2 193 51.8
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 5.3e-37 159.8 530 28.5
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 7.0e-37 159.5 367 31.3
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 1.2e-36 158.7 509 27.3
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 2.6e-36 157.5 468 28.4
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 1.3e-35 155.2 517 27.3
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 8.5e-35 152.5 400 28.5
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 2.5e-34 151.0 433 29.8
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 3.2e-34 150.6 513 26.7
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 4.2e-34 150.2 518 27.6
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 9.4e-34 149.1 493 27.0
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 1.6e-33 148.3 430 29.3
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.1e-33 147.9 433 29.1
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.6e-33 147.1 464 28.2
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.4e-32 145.2 494 26.7
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.4e-32 145.2 513 27.9
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 2.3e-32 144.4 402 28.1
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 4.0e-32 143.7 516 26.4
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 1.2e-31 142.1 346 28.9
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 2.0e-31 141.4 485 25.2
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 3.3e-31 140.6 308 33.4
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.8e-30 137.5 460 27.4
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 2.8e-30 137.5 268 35.1
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 2.8e-30 137.5 268 35.1
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.4e-29 135.2 296 31.4
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 2.4e-29 134.4 475 26.5
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 3.1e-29 134.0 516 27.1
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 9.1e-29 132.5 404 27.7
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 3.5e-28 130.6 270 36.3
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 3.5e-28 130.6 364 29.1
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 5.9e-28 129.8 245 32.7
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.1e-26 125.6 446 26.5
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 3.6e-25 120.6 271 34.3
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.3e-24 117.9 258 33.3
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 5.2e-24 116.7 250 32.4
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 1.7e-22 111.7 227 31.3
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 2.8e-22 110.9 366 27.6
Sp6g31820 Schrenkiella parvula HOM05D003538 ORTHO05D004376 3.8e-19 100.5 72 75.0
A02p40920 Brassica napus HOM05D003538 ORTHO05D018603 1.2e-17 95.5 63 69.8
A08p26910 Brassica napus HOM05D003538 ORTHO05D018603 1.2e-17 95.5 63 69.8
C02p02900 Brassica napus HOM05D003538 ORTHO05D018603 1.2e-17 95.5 63 69.8
C04p65130 Brassica napus HOM05D003538 ORTHO05D018603 1.2e-17 95.5 63 69.8
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.2e-15 89.0 246 29.3
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.3e-14 85.5 217 31.3
A02p40910 Brassica napus HOM05D003538 ORTHO05D027818 1.1e-13 82.4 86 59.3
A09p68670 Brassica napus HOM05D003538 ORTHO05D027818 1.1e-13 82.4 86 59.3
C08p16660 Brassica napus HOM05D003538 ORTHO05D027818 1.1e-13 82.4 86 59.3
BraA06t23891Z Brassica rapa HOM05D003538 ORTHO05D027818 1.1e-13 82.4 86 59.3
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.6e-12 78.6 276 26.8
A05p29870 Brassica napus HOM05D003538 ORTHO05D018603 2.7e-12 77.8 51 68.6
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 7.8e-12 76.3 293 27.0
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 1.0e-11 75.9 214 29.4
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 1.3e-11 75.5 181 28.7
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 5.0e-11 73.6 211 28.4
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.0e-11 73.6 246 26.8
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 6.6e-11 73.2 251 27.9
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.6e-09 68.6 243 25.9
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 4.7e-09 67.0 126 30.2
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 2.0e-07 61.6 242 26.4
A09p68660 Brassica napus HOM05D003538 ORTHO05D018603 4.4e-07 60.5 37 70.3
C08p16650 Brassica napus HOM05D003538 ORTHO05D018603 4.4e-07 60.5 37 70.3
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 5.7e-07 60.1 253 27.3
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 4.9e-06 57.0 246 26.0


User provided reference genes

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