Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 1.0e-102 376.7 190 100.0
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 9.8e-101 370.2 190 96.8
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 2.2e-100 369.0 190 96.3
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 8.3e-100 367.1 190 96.3
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 9.1e-99 363.6 190 93.7
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 2.7e-98 362.1 190 94.2
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 6.6e-97 357.5 190 91.1
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 6.6e-97 357.5 190 91.1
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 1.5e-96 356.3 190 91.1
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 1.5e-96 356.3 190 91.1
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 1.5e-96 356.3 190 91.1
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 7.2e-96 354.0 190 91.6
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 8.0e-95 350.5 190 92.6
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 1.8e-94 349.4 190 92.1
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 1.8e-94 349.4 190 92.1
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 4.0e-94 348.2 216 82.9
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 2.6e-93 345.5 188 87.8
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 5.6e-88 327.8 169 97.0
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 4.0e-86 321.6 190 83.7
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 1.7e-76 289.7 148 93.2
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 1.5e-69 266.5 188 66.5
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 2.6e-69 265.8 188 67.0
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 1.4e-67 260.0 189 65.1
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 9.2e-67 257.3 189 64.6
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 2.1e-66 256.1 189 63.0
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 3.5e-66 255.4 188 64.4
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 7.8e-66 254.2 189 65.6
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 1.3e-65 253.4 187 63.6
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 1.1e-64 250.4 189 65.1
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 1.5e-64 250.0 187 64.7
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 2.8e-63 245.7 190 61.1
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 1.4e-62 243.4 189 60.8
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 1.8e-62 243.0 189 61.4
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 6.8e-62 241.1 189 62.4
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 2.0e-61 239.6 192 61.5
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 2.0e-61 239.6 189 60.3
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 1.7e-60 236.5 224 53.6
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 2.9e-60 235.7 189 61.4
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 3.8e-60 235.3 188 58.0
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 4.9e-60 235.0 189 60.8
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 1.9e-59 233.0 189 58.7
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 1.9e-59 233.0 189 61.4
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 2.4e-59 232.6 188 61.7
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 4.2e-59 231.9 189 58.7
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 4.2e-59 231.9 187 62.0
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 5.4e-59 231.5 188 59.0
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 9.3e-59 230.7 188 60.6
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 9.3e-59 230.7 191 58.6
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 1.2e-58 230.3 189 59.3
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 1.6e-58 229.9 188 61.2
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 4.6e-58 228.4 188 61.7
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 6.0e-58 228.0 188 61.7
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 6.0e-58 228.0 189 59.8
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 1.7e-57 226.5 187 59.4
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 3.0e-57 225.7 186 59.1
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 3.0e-57 225.7 189 56.1
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 5.1e-57 224.9 188 58.5
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 6.6e-57 224.6 188 59.6
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 6.6e-57 224.6 188 58.5
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 8.7e-57 224.2 191 58.1
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 8.7e-57 224.2 188 55.3
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 1.1e-56 223.8 189 58.2
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 1.5e-56 223.4 191 56.5
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 1.5e-56 223.4 191 56.5
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 1.9e-56 223.0 189 59.8
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 1.9e-56 223.0 188 59.6
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 5.6e-56 221.5 191 55.5
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 7.3e-56 221.1 191 58.6
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 1.3e-55 220.3 189 59.8
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.8e-55 219.2 188 56.9
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 3.6e-55 218.8 183 59.0
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 3.6e-55 218.8 188 59.0
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 1.1e-54 217.2 188 56.9
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 1.1e-54 217.2 171 62.6
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.4e-54 216.9 189 56.1
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 1.4e-54 216.9 171 63.7
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 2.0e-53 213.0 187 56.1
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 3.4e-53 212.2 189 55.6
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 9.9e-53 210.7 179 57.5
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 2.2e-52 209.5 188 54.8
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 2.9e-52 209.1 170 61.2
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 8.4e-52 207.6 170 60.0
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 8.4e-52 207.6 179 57.0
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 3.2e-51 205.7 169 59.2
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 1.6e-50 203.4 189 51.9
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 3.5e-50 202.2 157 60.5
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 3.5e-50 202.2 189 51.9
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 3.5e-50 202.2 187 53.5
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 4.6e-50 201.8 144 67.4
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 4.6e-50 201.8 189 50.8
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 4.6e-50 201.8 188 54.8
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 1.3e-49 200.3 157 59.9
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 9.6e-48 194.1 188 52.7
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 1.3e-47 193.7 188 53.2
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 1.6e-47 193.4 170 56.5
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 6.9e-46 188.0 156 56.4
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 2.4e-43 179.5 161 54.7
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 3.3e-40 169.1 254 39.8
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 9.6e-40 167.5 170 53.5
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 6.2e-39 164.9 132 62.9
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 1.2e-34 150.6 188 45.7
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 7.4e-32 141.4 105 59.0
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 7.4e-32 141.4 107 69.2
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 7.6e-29 131.3 192 42.7
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.2e-23 113.2 82 58.5
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.2e-23 113.2 82 58.5
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 4.5e-21 105.5 128 46.1
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 2.5e-19 99.8 95 50.5
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 1.4e-17 94.0 189 31.7
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 3.0e-17 92.8 183 30.6
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 8.8e-17 91.3 82 50.0
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 8.8e-17 91.3 103 43.7
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 5.0e-12 75.5 62 53.2
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 1.4e-11 73.9 149 32.2
Haze_26101 Corylus avellana HOM05D006609 ORTHO05D008551 7.4e-08 61.6 81 39.5


User provided reference genes

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