Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1933.7 983 100.0
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1875.1 983 96.7
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1844.7 983 95.4
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1817.0 983 93.1
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1812.7 983 92.9
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1808.9 983 92.4
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1803.9 983 92.5
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1795.8 983 91.6
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1792.3 983 91.6
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1783.1 998 90.1
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1780.8 983 91.1
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1776.9 983 90.7
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1765.0 984 90.2
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1765.0 1003 88.9
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1761.9 984 90.0
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1744.9 1010 87.7
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1702.2 998 87.1
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1643.2 983 85.6
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1597.4 983 82.5
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1569.7 983 79.7
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1442.9 983 72.2
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1435.6 993 70.9
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1434.1 985 71.4
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1434.1 983 71.4
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1434.1 986 71.5
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1428.7 984 71.1
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1427.2 984 71.1
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1427.2 985 71.7
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1425.6 984 71.2
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1422.9 985 70.9
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1422.5 984 71.8
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1418.7 986 70.6
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1412.9 984 70.7
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1412.5 986 70.1
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1404.4 985 71.1
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1402.9 984 69.4
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1401.3 985 70.6
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1401.3 984 69.7
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1398.6 984 69.7
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1398.3 986 69.6
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1396.7 985 69.4
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1395.2 984 69.2
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1392.9 983 70.1
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1392.1 982 69.0
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1390.9 950 71.2
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1390.9 984 69.0
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1389.4 984 68.4
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1388.6 984 67.5
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1385.5 984 68.6
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1383.6 986 68.1
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1380.5 986 69.1
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1378.6 1007 67.5
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1378.2 983 68.2
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1377.8 984 68.5
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1375.5 984 67.4
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1374.4 984 67.6
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1374.4 984 66.8
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1374.0 985 67.7
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1373.2 985 68.6
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1373.2 984 68.7
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1372.8 987 67.8
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1372.5 984 68.7
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1371.7 985 68.3
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1371.7 985 68.5
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1370.9 984 67.1
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1370.1 984 67.6
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1370.1 984 68.3
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1368.6 985 68.1
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1368.2 984 67.4
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1368.2 984 68.4
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1367.4 985 68.5
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1364.7 984 67.1
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1360.9 984 67.2
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1360.1 984 67.0
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1354.3 984 67.0
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1353.2 973 67.9
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1350.5 985 67.8
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1347.8 984 66.6
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1347.4 978 66.8
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1347.0 985 67.6
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1344.3 984 66.0
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1343.6 1006 67.8
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1340.1 985 67.1
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1329.7 985 66.1
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1328.5 983 66.4
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1326.6 984 66.2
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1326.6 983 65.0
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1323.5 986 64.8
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1323.1 983 64.8
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1321.6 984 65.7
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1320.1 992 66.4
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1318.9 983 65.6
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1317.0 984 65.5
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1312.7 985 65.8
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1312.0 1077 62.0
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1308.1 992 66.3
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1299.3 984 64.2
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1294.6 954 65.8
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1291.2 988 63.8
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1288.5 900 70.0
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1288.5 987 65.0
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1283.9 952 65.9
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1283.9 978 63.7
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1283.1 1014 62.9
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1281.9 986 63.4
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1276.5 988 62.9
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1276.5 986 63.3
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1272.3 1079 59.6
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1269.2 992 62.8
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1250.0 980 62.4
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1246.1 984 63.1
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1245.0 984 63.1
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1219.9 968 64.4
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1216.8 978 60.9
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1216.4 985 60.8
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1209.5 975 59.5
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1199.5 984 61.2
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1188.3 976 59.3
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1187.9 897 65.0
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1153.7 847 64.7
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1152.5 1012 57.7
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1082.4 881 60.5
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1077.8 847 61.4
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 8.7e-310 1067.0 956 55.9
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 1.5e-298 1029.6 810 62.1
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 9.3e-288 993.8 989 51.1
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 1.3e-281 973.4 996 50.8
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 4.0e-254 882.1 659 66.5
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.0e-246 855.9 541 75.0
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 7.0e-243 844.7 956 47.7
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.2e-229 800.8 688 57.3
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 1.6e-218 763.8 657 59.2
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.3e-199 701.0 530 64.2
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 3.6e-199 699.5 881 42.7
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.9e-179 634.0 809 46.0
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.2e-165 588.2 362 76.8
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 5.5e-155 552.7 915 38.1
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.5e-139 501.5 420 61.9
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 1.7e-135 488.0 296 79.4
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 1.2e-133 481.9 296 78.0
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 7.0e-126 456.1 829 35.9
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.7e-125 454.1 282 75.9
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 4.0e-113 413.7 1016 31.8
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 1.4e-110 405.2 1034 29.4
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 4.7e-106 390.2 257 73.2
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.3e-100 372.1 322 59.0
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 2.5e-99 367.9 667 38.8
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 2.4e-86 324.7 380 46.8
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 3.2e-78 297.7 428 38.6
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 5.1e-76 290.4 318 49.1
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 7.1e-70 270.0 257 55.6
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 2.3e-68 265.0 359 42.9
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 3.9e-60 237.7 129 91.5
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 5.7e-59 233.8 125 93.6
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 3.2e-54 218.0 184 58.2
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 3.2e-54 218.0 147 74.1
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 5.5e-54 217.2 125 89.6
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 5.1e-52 210.7 251 47.0
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 1.3e-47 196.1 140 65.7
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 2.5e-46 191.8 107 88.8
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 2.5e-46 191.8 107 88.8
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 1.6e-45 189.1 107 87.9
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 6.7e-44 183.7 105 80.0
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 6.3e-42 177.2 1031 22.3
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 4.2e-38 164.5 200 50.0
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 2.1e-29 135.6 85 77.6
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 3.7e-26 124.8 121 62.0
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 3.7e-26 124.8 121 62.0
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 8.2e-26 123.6 81 67.9
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 2.9e-23 115.2 71 80.3
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 5.7e-19 100.9 72 70.8
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 4.8e-18 97.8 82 57.3
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 8.3e-18 97.1 63 71.4
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 9.1e-17 93.6 62 67.7
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 3.8e-15 88.2 53 69.8
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 1.1e-14 86.7 60 66.7
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 2.5e-14 85.5 141 40.4
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 4.2e-14 84.7 45 77.8
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.8e-13 82.0 69 59.4
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 2.8e-13 82.0 182 29.7
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.3e-12 79.0 60 61.7
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 3.0e-12 78.6 166 34.3
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 5.6e-06 57.8 37 78.4


User provided reference genes

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