Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G10605 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 2.5e-23 111.3 57 100.0
Thhalv10014744m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 4.5e-09 63.9 36 88.9
BcaB08g37096 Brassica carinata HOM05D007029 ORTHO05D008258 1.0e-08 62.8 36 86.1
A10p26970 Brassica napus HOM05D007029 ORTHO05D008258 1.0e-08 62.8 36 86.1
BraA10t44748Z Brassica rapa HOM05D007029 ORTHO05D008258 1.0e-08 62.8 36 86.1
Sp6g32830 Schrenkiella parvula HOM05D007029 ORTHO05D008258 1.0e-08 62.8 36 86.1
AL6G21140 Arabidopsis lyrata HOM05D007029 ORTHO05D008258 1.3e-08 62.4 36 86.1
AT5G10620 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 2.2e-08 61.6 36 86.1
CARHR202690 Cardamine hirsuta HOM05D007029 ORTHO05D008258 2.2e-08 61.6 36 86.1
Aa31LG3G16490 Aethionema arabicum HOM05D007029 ORTHO05D008258 5.0e-08 60.5 36 83.3
C09p66200 Brassica napus HOM05D007029 ORTHO05D008258 5.0e-08 60.5 36 83.3
C09p66410 Brassica napus HOM05D007029 ORTHO05D008258 5.0e-08 60.5 36 83.3
C09p66490 Brassica napus HOM05D007029 ORTHO05D008258 5.0e-08 60.5 36 83.3
C09p66570 Brassica napus HOM05D007029 ORTHO05D008258 5.0e-08 60.5 36 83.3
BolC9t59441H Brassica oleracea HOM05D007029 ORTHO05D008258 5.0e-08 60.5 36 83.3
BolC9t59447H Brassica oleracea HOM05D007029 ORTHO05D008258 5.0e-08 60.5 36 83.3
TAR626G0900 Trochodendron aralioides HOM05D007029 ORTHO05D008258 5.0e-08 60.5 36 83.3
CSS0017002 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 1.1e-07 59.3 36 77.8
CSS0043998 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 1.1e-07 59.3 36 77.8
SGA_v2.0_scaffold27G11664 Striga asiatica HOM05D007029 ORTHO05D008258 1.1e-07 59.3 50 58.0
THA.LOC104799006 Tarenaya hassleriana HOM05D007029 ORTHO05D008258 1.1e-07 59.3 36 80.6
Lj7A749T66 Lonicera japonica HOM05D007029 ORTHO05D008258 1.4e-07 58.9 36 80.6
Hund03277 Selenicereus undatus HOM05D007029 ORTHO05D008258 1.4e-07 58.9 41 70.7
GSVIVG01035546001 Vitis vinifera HOM05D007029 ORTHO05D008258 1.4e-07 58.9 36 77.8
Sabra06G0216100 Salix brachista HOM05D007029 ORTHO05D008258 1.9e-07 58.5 36 77.8
CsaV3_3G046940 Cucumis sativus L. HOM05D007029 ORTHO05D008258 2.5e-07 58.2 46 63.0
Gohir.A06G106900 Gossypium hirsutum HOM05D007029 ORTHO05D008258 2.5e-07 58.2 36 77.8
Gorai.010G123900 Gossypium raimondii HOM05D007029 ORTHO05D008258 2.5e-07 58.2 36 77.8
Oeu059279.1 Olea europaea HOM05D007029 ORTHO05D008258 2.5e-07 58.2 43 65.1
PSO144G0063 Papaver somniferum HOM05D007029 ORTHO05D008258 2.5e-07 58.2 36 77.8
Potri.006G278500 Populus trichocarpa HOM05D007029 ORTHO05D008258 2.5e-07 58.2 36 75.0
CAN.G947.13 Capsicum annuum HOM05D007029 ORTHO05D008258 3.2e-07 57.8 36 75.0
Cfa013252 Carpinus fangiana HOM05D007029 ORTHO05D008258 3.2e-07 57.8 36 75.0
Hma1.2p1_0443F.1_g154050 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 3.2e-07 57.8 36 77.8
Hma1.2p1_0443F.1_g154060 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 3.2e-07 57.8 36 77.8
SalBow4G2612 Salvia bowleyana HOM05D007029 ORTHO05D008258 3.2e-07 57.8 43 67.4
unitig_748.g7379 Utricularia gibba HOM05D007029 ORTHO05D008258 3.2e-07 57.8 41 70.7
Cpa.g.sc10.205 Carica papaya HOM05D007029 ORTHO05D008258 4.2e-07 57.4 36 75.0
Duzib168G0066 Durio zibethinus HOM05D007029 ORTHO05D008258 4.2e-07 57.4 36 75.0
Oeu038914.4 Olea europaea HOM05D000263 ORTHO05D008258 4.2e-07 57.4 36 77.8
PGSC0003DMG400029282 Solanum tuberosum HOM05D007029 ORTHO05D008258 4.2e-07 57.4 36 72.2
Cc06_g08830 Coffea canephora HOM05D007029 ORTHO05D008258 5.5e-07 57.0 36 75.0
Haze_08560 Corylus avellana HOM05D007029 ORTHO05D008258 5.5e-07 57.0 33 78.8
Migut.A00446 Erythranthe guttata HOM05D007029 ORTHO05D008258 5.5e-07 57.0 43 65.1
Lalb_Chr24g0402421 Lupinus albus HOM05D007029 ORTHO05D008258 5.5e-07 57.0 36 75.0
QL12p024672 Quercus lobata HOM05D007029 ORTHO05D008258 5.5e-07 57.0 36 72.2
Aqoxy7G02769 Aquilegia oxysepala HOM05D007029 ORTHO05D008258 7.2e-07 56.6 36 72.2
Atru.chr7.2665 Acer truncatum HOM05D007029 ORTHO05D008258 9.4e-07 56.2 36 72.2
Carub.0006s0910 Capsella rubella HOM05D007029 ORTHO05D008258 9.4e-07 56.2 32 84.4
Manes.03G086800 Manihot esculenta HOM05D007029 ORTHO05D008258 9.4e-07 56.2 36 75.0
Nitab4.5_0001159g0100 Nicotiana tabacum HOM05D007029 ORTHO05D008258 9.4e-07 56.2 36 69.4
Nitab4.5_0003963g0040 Nicotiana tabacum HOM05D007029 ORTHO05D008258 9.4e-07 56.2 36 69.4
Peaxi162Scf00459g00835 Petunia axillaris HOM05D007029 ORTHO05D008258 9.4e-07 56.2 36 69.4
CiPaw.07G214600 Carya illinoinensis HOM05D007029 ORTHO05D008258 1.2e-06 55.8 36 72.2
FvH4_2g30670 Fragaria vesca HOM05D007029 ORTHO05D008258 1.2e-06 55.8 36 69.4
FAN20G2423 Fragaria x ananassa HOM05D007029 ORTHO05D008258 1.2e-06 55.8 36 69.4
Lj5g0005194 Lotus japonicus HOM05D007029 ORTHO05D008258 1.2e-06 55.8 36 69.4
RcHm_v2.0_Chr6g0312221 Rosa chinensis HOM05D007029 ORTHO05D008258 1.2e-06 55.8 36 69.4
Solyc12g096330.3 Solanum lycopersicum HOM05D007029 ORTHO05D008258 1.2e-06 55.8 36 72.2
Sopen12g032190 Solanum pennellii HOM05D007029 ORTHO05D008258 1.2e-06 55.8 36 72.2
Thecc.09G005000 Theobroma cacao HOM05D007029 ORTHO05D008258 1.2e-06 55.8 36 72.2
MELO3C003643.2 Cucumis melo HOM05D007029 ORTHO05D008258 1.6e-06 55.5 36 72.2
Mapoly0056s0124 Marchantia polymorpha HOM05D007029 ORTHO05D008258 1.6e-06 55.5 41 63.4
ATR0626G398 Amborella trichopoda HOM05D007029 ORTHO05D008258 2.1e-06 55.1 41 61.0
Eucgr.C03998 Eucalyptus grandis HOM05D007029 ORTHO05D008258 2.1e-06 55.1 36 72.2
Glyma.17G201400 Glycine max HOM05D007029 ORTHO05D008258 2.1e-06 55.1 36 69.4
HanXRQChr14g0454741 Helianthus annuus HOM05D007029 ORTHO05D008258 2.1e-06 55.1 41 65.9
Nn8g40869 Nelumbo nucifera HOM05D007029 ORTHO05D008258 2.1e-06 55.1 47 63.8
Sed0023533 Sechium edule HOM05D007029 ORTHO05D008258 2.1e-06 55.1 36 72.2
MD15G1110100 Malus domestica HOM05D007029 ORTHO05D008258 2.7e-06 54.7 36 72.2
Psat6g031920 Pisum sativum HOM05D007029 ORTHO05D008258 2.7e-06 54.7 36 69.4
TPR.G12034 Trifolium pratense HOM05D007029 ORTHO05D008258 2.7e-06 54.7 36 69.4
MBI13_g31530_MAGBIO Magnolia biondii HOM05D007029 ORTHO05D008258 3.6e-06 54.3 36 69.4
Oeu059287.2 Olea europaea HOM05D007029 ORTHO05D008258 3.6e-06 54.3 36 72.2
arahy.Tifrunner.gnm1.ann1.J6QZET Arachis hypogaea HOM05D007029 ORTHO05D008258 4.7e-06 53.9 36 69.4
arahy.Tifrunner.gnm1.ann1.MMLL3W Arachis hypogaea HOM05D007029 ORTHO05D008258 4.7e-06 53.9 36 69.4
MSTRG.25772 Avicennia marina HOM05D007029 ORTHO05D008258 4.7e-06 53.9 43 60.5
EL10Ac2g03716 Beta vulgaris HOM05D007029 ORTHO05D008258 4.7e-06 53.9 36 72.2
Phvul.001G057900 Phaseolus vulgaris HOM05D007029 ORTHO05D008258 4.7e-06 53.9 36 66.7
Ca_12881_v3 Cicer arietinum L. HOM05D007029 ORTHO05D008258 6.1e-06 53.5 36 66.7
Glyma.14G132800 Glycine max HOM05D007029 ORTHO05D008258 6.1e-06 53.5 36 66.7
Prupe.1G462300 Prunus persica HOM05D007029 ORTHO05D008258 6.1e-06 53.5 36 66.7
Sc09g0007640 Simmondsia chinensis HOM05D007029 ORTHO05D008258 6.1e-06 53.5 36 66.7
Sc09g0007900 Simmondsia chinensis HOM05D007029 ORTHO05D008258 6.1e-06 53.5 36 66.7
Ciclev10009808m.g Citrus clementina HOM05D007029 ORTHO05D008258 7.9e-06 53.1 36 69.4


User provided reference genes

Program Settings