Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 3.8e-227 791.2 403 100.0
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 9.6e-207 723.4 402 93.0
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 8.5e-187 657.1 403 82.9
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 5.5e-186 654.4 405 81.5
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 7.2e-186 654.1 403 81.9
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 2.3e-184 649.0 411 82.0
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 2.0e-180 636.0 408 79.7
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 2.6e-180 635.6 405 81.2
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 4.8e-174 614.8 409 79.2
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 2.0e-156 556.2 410 72.4
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 1.3e-142 510.4 306 84.3
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 2.7e-140 502.7 312 83.0
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 9.2e-133 477.6 296 80.7
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 1.4e-128 463.8 404 62.1
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 3.1e-128 462.6 334 71.9
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 6.4e-126 454.9 291 82.8
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 6.4e-126 454.9 403 59.3
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 1.1e-122 444.1 408 59.1
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 1.5e-122 443.7 405 58.0
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 2.5e-122 443.0 405 57.8
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 5.6e-122 441.8 405 57.5
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 7.3e-122 441.4 410 58.5
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 9.6e-122 441.0 403 57.8
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 9.6e-122 441.0 405 59.5
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 6.2e-121 438.3 407 57.2
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 1.4e-120 437.2 402 57.7
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 5.2e-120 435.3 407 58.0
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 1.2e-119 434.1 405 58.0
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 5.8e-119 431.8 411 56.4
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 5.8e-119 431.8 404 56.4
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 7.6e-119 431.4 404 55.7
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 1.7e-118 430.3 404 56.2
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 1.7e-118 430.3 404 55.4
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 2.4e-117 426.4 415 57.1
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 2.4e-117 426.4 408 56.1
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 5.4e-117 425.2 411 56.4
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 7.1e-117 424.9 414 57.2
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 6.0e-116 421.8 407 54.3
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 5.1e-115 418.7 400 53.8
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 8.7e-115 417.9 409 55.3
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 1.5e-114 417.2 403 53.6
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 1.5e-114 417.2 403 54.6
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 2.5e-114 416.4 405 53.3
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 2.5e-114 416.4 359 61.0
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 5.6e-114 415.2 402 57.2
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 1.3e-113 414.1 412 54.1
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 4.0e-112 409.1 404 53.0
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 5.3e-112 408.7 417 53.2
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 9.0e-112 407.9 439 51.3
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 9.0e-112 407.9 450 51.3
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 3.8e-110 402.5 400 53.2
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 4.9e-110 402.1 406 53.2
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 7.1e-109 398.3 414 55.6
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.7e-108 396.4 256 82.0
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 7.9e-108 394.8 405 54.8
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 3.3e-106 389.4 419 51.3
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 4.3e-106 389.0 368 55.7
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 1.3e-105 387.5 449 49.9
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 8.1e-105 384.8 447 49.9
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 2.4e-104 383.3 526 44.9
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 1.5e-103 380.6 411 52.3
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 2.6e-103 379.8 360 55.3
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 7.6e-103 378.3 408 52.2
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 7.6e-103 378.3 482 47.1
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 9.9e-103 377.9 404 50.7
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 1.6e-100 370.5 399 51.1
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 7.9e-100 368.2 423 48.5
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 6.2e-97 358.6 397 51.1
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 1.3e-94 350.9 407 51.4
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 2.2e-94 350.1 412 48.3
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 2.5e-93 346.7 288 60.4
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 3.0e-91 339.7 403 50.6
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 4.1e-88 329.3 404 46.3
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 1.7e-86 323.9 402 45.0
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 5.0e-86 322.4 458 45.4
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.7e-84 316.6 295 56.9
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 1.0e-83 314.7 317 55.5
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 6.7e-83 312.0 416 44.2
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 5.7e-82 308.9 300 54.0
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 2.8e-81 306.6 309 54.7
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 8.2e-81 305.1 312 53.2
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.8e-80 303.9 312 53.5
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 5.3e-80 302.4 319 52.4
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 1.5e-79 300.8 330 52.1
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 2.2e-78 297.0 316 53.5
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 2.2e-78 297.0 419 41.8
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 2.5e-77 293.5 336 51.5
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 1.6e-76 290.8 311 51.1
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 3.6e-76 289.7 314 52.9
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 3.9e-75 286.2 444 41.0
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 1.7e-73 280.8 441 41.5
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 2.0e-71 273.9 571 34.9
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 7.7e-71 271.9 274 53.3
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 6.5e-70 268.9 432 42.8
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 1.8e-67 260.8 308 50.3
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 8.8e-67 258.5 463 36.1
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 3.3e-66 256.5 292 50.0
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 4.4e-66 256.1 407 40.3
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.3e-65 254.6 419 40.8
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 7.0e-64 248.8 300 45.7
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.8e-59 234.2 148 75.0
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 7.2e-53 212.2 311 41.2
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 1.2e-52 211.5 259 43.2
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 4.0e-51 206.5 313 41.2
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 4.0e-51 206.5 184 55.4
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 7.0e-48 195.7 285 41.1
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 7.0e-48 195.7 402 35.1
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 6.8e-43 179.1 231 44.6
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 2.9e-38 163.7 85 95.3
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 4.7e-36 156.4 292 36.3
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 4.7e-36 156.4 375 31.5
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 3.4e-34 150.2 94 74.5
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 1.3e-33 148.3 93 75.3
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 6.4e-33 146.0 282 33.3
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 2.8e-28 130.6 78 82.1
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 7.8e-23 112.5 77 66.2
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 3.4e-18 97.1 73 63.0
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 3.7e-17 93.6 123 40.7
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 1.4e-16 91.7 90 54.4
Sp1g28000 Schrenkiella parvula HOM05D006096 ORTHO05D007775 1.9e-16 91.3 99 53.5
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 4.1e-16 90.1 65 61.5
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 4.3e-13 80.1 242 28.5
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 1.6e-12 78.2 86 46.5
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 4.7e-12 76.6 91 52.7
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 4.4e-10 70.1 96 46.9
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.3e-09 68.6 68 50.0
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 9.2e-08 62.4 74 43.2
Aa31LG7G15400 Aethionema arabicum HOM05D006096 ORTHO05D009377 1.2e-07 62.0 118 41.5
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 1.6e-07 61.6 59 61.0


User provided reference genes

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