Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 1.7e-108 396.0 198 100.0
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 1.6e-90 336.3 198 87.4
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 4.6e-85 318.2 200 83.0
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 9.6e-83 310.5 197 80.7
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 6.2e-82 307.8 199 78.9
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.1e-81 307.0 198 79.3
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 2.0e-80 302.8 198 77.3
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 2.6e-80 302.4 198 76.3
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 3.4e-80 302.0 198 76.3
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 3.4e-80 302.0 198 76.3
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 7.6e-80 300.8 198 78.3
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 6.4e-79 297.7 198 75.3
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 1.8e-57 226.5 199 63.8
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 3.1e-57 225.7 204 60.8
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 6.9e-57 224.6 204 60.8
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 2.9e-55 219.2 202 61.9
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 6.5e-55 218.0 202 58.9
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.9e-54 216.5 190 63.2
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 9.3e-54 214.2 199 58.3
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 2.1e-53 213.0 204 58.8
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 4.6e-53 211.8 201 57.7
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 4.6e-53 211.8 201 57.7
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 4.6e-53 211.8 201 57.7
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 7.9e-53 211.1 198 60.6
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 6.9e-49 198.0 187 57.8
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 4.2e-46 188.7 179 58.1
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 6.7e-36 154.8 97 76.3
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 1.1e-35 154.1 204 45.6
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 2.0e-35 153.3 214 43.5
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 9.7e-35 151.0 203 44.3
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 2.2e-34 149.8 203 44.3
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 3.7e-34 149.1 211 42.7
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 1.4e-33 147.1 204 43.1
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 2.2e-31 139.8 208 43.3
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 2.2e-31 139.8 206 39.3
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 2.9e-31 139.4 203 42.4
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 3.8e-31 139.0 193 42.0
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 5.0e-31 138.7 88 73.9
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.1e-30 137.5 198 39.9
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 1.5e-30 137.1 213 42.3
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 1.9e-30 136.7 198 39.4
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 1.9e-30 136.7 198 39.4
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 3.2e-30 136.0 195 43.6
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 4.2e-30 135.6 221 40.7
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 4.2e-30 135.6 206 41.7
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 4.2e-30 135.6 198 40.9
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 4.2e-30 135.6 198 40.9
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 5.5e-30 135.2 206 40.3
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.6e-29 133.7 198 39.4
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.1e-29 133.3 219 39.3
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 2.7e-29 132.9 201 41.8
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 2.7e-29 132.9 198 39.9
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.4e-28 130.6 220 40.5
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.3e-28 129.8 220 39.1
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 3.0e-28 129.4 202 39.6
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 6.7e-28 128.3 205 39.0
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 6.7e-28 128.3 196 39.8
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 1.1e-27 127.5 200 35.5
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.5e-27 127.1 220 40.0
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 2.6e-27 126.3 200 40.0
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.3e-27 125.9 206 39.3
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 7.5e-27 124.8 205 38.0
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.3e-26 124.0 204 37.3
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 1.3e-26 124.0 203 42.9
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.2e-26 123.2 218 37.6
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 2.8e-26 122.9 209 38.3
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 3.7e-26 122.5 209 37.8
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 6.3e-26 121.7 163 46.0
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 6.3e-26 121.7 205 36.1
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 8.2e-26 121.3 231 37.2
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 8.2e-26 121.3 231 37.2
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 1.1e-25 120.9 205 36.1
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.1e-25 120.9 209 36.4
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 1.1e-25 120.9 182 39.6
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 2.4e-25 119.8 192 39.6
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 5.3e-25 118.6 206 37.9
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 5.3e-25 118.6 206 38.3
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.6e-24 117.1 205 35.1
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.6e-24 117.1 191 39.8
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 2.0e-24 116.7 229 37.6
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 2.7e-24 116.3 208 37.0
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 2.7e-24 116.3 208 37.0
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.7e-24 116.3 202 39.1
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 4.5e-24 115.5 205 35.1
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 4.5e-24 115.5 210 36.7
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 7.7e-24 114.8 204 36.8
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 7.7e-24 114.8 204 38.2
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 7.7e-24 114.8 200 37.0
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 1.0e-23 114.4 180 39.4
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.3e-23 114.0 185 38.4
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 2.2e-23 113.2 204 37.3
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 5.0e-23 112.1 201 37.8
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 6.5e-23 111.7 206 36.9
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 8.5e-23 111.3 180 37.8
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 1.1e-22 110.9 202 32.2
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.5e-22 110.5 211 32.2
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.9e-22 110.2 193 37.8
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 2.5e-22 109.8 211 37.0
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 2.5e-22 109.8 213 35.7
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 3.2e-22 109.4 202 35.1
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 3.2e-22 109.4 211 36.5
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.5e-22 108.6 189 37.6
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.5e-22 108.6 189 37.6
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 9.4e-22 107.8 210 33.3
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.2e-21 107.5 188 35.6
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.6e-21 107.1 201 34.8
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 2.7e-21 106.3 201 32.3
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 8.0e-21 104.8 215 32.6
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 1.8e-20 103.6 189 37.0
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.3e-20 103.2 167 36.5
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 2.3e-20 103.2 159 38.4
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 3.0e-20 102.8 180 33.9
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 5.2e-20 102.1 109 49.5
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 8.8e-20 101.3 167 36.5
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 8.8e-20 101.3 199 35.2
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 1.2e-19 100.9 203 35.0
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.2e-19 100.9 194 34.5
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 1.2e-19 100.9 186 34.4
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.5e-19 100.5 195 33.3
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 1.5e-19 100.5 136 39.7
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 1.5e-19 100.5 201 30.8
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 1.5e-19 100.5 201 30.8
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 2.0e-19 100.1 195 34.4
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 2.6e-19 99.8 203 31.0
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 4.4e-19 99.0 174 38.5
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 9.8e-19 97.8 196 31.6
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 1.3e-18 97.4 201 30.3
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 1.3e-18 97.4 194 32.0
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 1.7e-18 97.1 194 32.0
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 1.7e-18 97.1 203 35.5
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 2.2e-18 96.7 184 31.5
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 3.7e-18 95.9 201 29.9
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 3.7e-18 95.9 171 33.3
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 3.7e-18 95.9 193 32.1
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 4.8e-18 95.5 194 34.5
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 4.8e-18 95.5 198 29.8
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 6.3e-18 95.1 196 32.7
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 8.3e-18 94.7 194 30.9
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 8.3e-18 94.7 195 31.3
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 1.1e-17 94.4 202 30.2
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 1.1e-17 94.4 121 40.5
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 1.1e-17 94.4 194 32.0
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 1.8e-17 93.6 135 38.5
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 1.8e-17 93.6 196 31.1
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 2.4e-17 93.2 125 38.4
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 2.4e-17 93.2 121 39.7
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 7.0e-17 91.7 203 30.0
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 1.2e-16 90.9 121 38.0
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 1.6e-16 90.5 211 33.6
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 1.6e-16 90.5 194 33.5
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 1.6e-16 90.5 203 30.0
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 2.0e-16 90.1 200 35.0
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.7e-16 89.7 156 35.9
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 3.5e-16 89.4 191 35.6
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 3.5e-16 89.4 193 30.6
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 3.5e-16 89.4 195 33.8
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 4.5e-16 89.0 169 34.9
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 5.9e-16 88.6 165 30.9
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 1.0e-15 87.8 193 32.6
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 1.3e-15 87.4 201 34.3
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 1.3e-15 87.4 197 34.5
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 3.8e-15 85.9 196 30.1
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 1.9e-14 83.6 194 28.9
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 5.5e-14 82.0 212 32.1
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 7.2e-14 81.6 137 37.2
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 9.4e-14 81.3 120 36.7
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 2.1e-13 80.1 212 31.6
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 2.1e-13 80.1 136 39.7
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 6.1e-13 78.6 217 34.1
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 1.0e-12 77.8 170 32.4
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 1.5e-11 73.9 84 44.0
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 7.5e-11 71.6 161 29.8
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.8e-10 69.7 132 34.1
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 1.8e-09 67.0 90 35.6
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 4.1e-09 65.9 138 31.2
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 9.2e-09 64.7 121 33.1
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.0e-08 63.5 136 32.4
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 1.0e-07 61.2 137 32.8
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.9e-07 59.7 138 31.9
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 7.3e-06 55.1 124 33.1


User provided reference genes

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