Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 6.4e-81 304.3 185 100.0
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 1.3e-76 290.0 185 95.7
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 2.2e-73 279.3 185 94.1
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.6e-71 273.1 185 91.9
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 2.4e-67 259.2 186 87.1
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.1e-63 246.1 186 79.0
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 1.0e-57 227.3 184 69.6
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 7.1e-56 221.1 184 68.5
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 9.3e-56 220.7 185 68.1
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 9.3e-56 220.7 185 68.1
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 1.0e-54 217.2 185 69.2
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 1.8e-54 216.5 188 67.0
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 5.7e-53 211.5 184 67.9
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 6.1e-47 191.4 178 61.8
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.8e-43 179.9 187 65.8
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.6e-42 176.0 184 64.1
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 2.6e-42 176.0 183 63.4
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 5.0e-41 171.8 185 61.6
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.4e-40 170.2 185 56.2
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 4.2e-32 142.1 184 54.3
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 9.4e-32 141.0 130 55.4
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 9.4e-32 141.0 130 55.4
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 2.7e-31 139.4 186 57.0
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 1.1e-29 134.0 161 46.0
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 1.5e-29 133.7 161 46.6
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 3.3e-29 132.5 153 50.3
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 1.7e-28 130.2 192 43.8
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 2.8e-28 129.4 78 78.2
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 3.7e-28 129.0 191 54.5
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 3.7e-28 129.0 153 55.6
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 6.3e-28 128.3 157 51.0
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 8.2e-28 127.9 77 76.6
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.1e-27 127.5 78 75.6
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 1.1e-27 127.5 77 76.6
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 1.4e-27 127.1 78 76.9
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 1.4e-27 127.1 77 77.9
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.4e-27 127.1 78 74.4
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.4e-27 126.3 77 75.3
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.4e-27 126.3 77 75.3
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 3.1e-27 125.9 78 74.4
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 5.3e-27 125.2 78 74.4
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 5.3e-27 125.2 77 74.0
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 5.3e-27 125.2 77 75.3
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 5.3e-27 125.2 77 75.3
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 5.3e-27 125.2 77 74.0
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 9.1e-27 124.4 77 76.6
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 9.1e-27 124.4 77 74.0
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 9.1e-27 124.4 177 54.2
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 1.2e-26 124.0 77 75.3
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 2.0e-26 123.2 77 74.0
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.6e-26 122.9 78 74.4
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 2.6e-26 122.9 78 74.4
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 2.6e-26 122.9 182 51.1
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 2.6e-26 122.9 77 74.0
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 3.5e-26 122.5 145 62.8
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 4.5e-26 122.1 79 73.4
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 4.5e-26 122.1 78 73.1
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 4.5e-26 122.1 78 74.4
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 5.9e-26 121.7 77 74.0
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 5.9e-26 121.7 78 74.4
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 1.7e-25 120.2 157 46.5
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 1.7e-25 120.2 78 71.8
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 2.9e-25 119.4 188 42.6
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 3.8e-25 119.0 77 71.4
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 3.8e-25 119.0 157 50.3
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 3.8e-25 119.0 77 70.1
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 6.5e-25 118.2 79 70.9
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 6.5e-25 118.2 77 70.1
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 1.5e-24 117.1 115 59.1
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 1.5e-24 117.1 177 43.5
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 1.5e-24 117.1 80 68.8
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 2.5e-24 116.3 170 43.5
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 2.5e-24 116.3 77 67.5
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 2.5e-24 116.3 77 68.8
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 4.2e-24 115.5 69 75.4
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 7.2e-24 114.8 79 68.4
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 1.2e-23 114.0 160 41.9
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 1.2e-23 114.0 80 67.5
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.2e-23 114.0 67 76.1
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 1.2e-23 114.0 67 76.1
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 1.6e-23 113.6 157 49.0
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 1.6e-23 113.6 80 72.5
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 1.6e-23 113.6 155 45.2
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 2.1e-23 113.2 126 49.2
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 2.7e-23 112.8 176 43.8
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 4.7e-23 112.1 150 44.7
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 6.1e-23 111.7 79 68.4
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 6.1e-23 111.7 184 44.6
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 1.0e-22 110.9 79 69.6
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 1.4e-22 110.5 174 40.2
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 5.2e-22 108.6 77 62.3
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 6.7e-22 108.2 79 59.5
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 6.7e-22 108.2 79 58.2
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 8.8e-22 107.8 77 64.9
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 2.6e-21 106.3 75 62.7
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 2.6e-21 106.3 78 66.7
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 7.5e-21 104.8 79 57.0
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 7.5e-21 104.8 79 57.0
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 1.3e-20 104.0 78 62.8
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.7e-20 103.6 77 58.4
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.7e-20 103.6 80 65.0
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 1.7e-20 103.6 81 64.2
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 2.2e-20 103.2 80 60.0
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 2.2e-20 103.2 69 71.0
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 2.2e-20 103.2 80 63.8
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 2.8e-20 102.8 81 65.4
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 3.7e-20 102.4 80 63.8
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 3.7e-20 102.4 80 63.8
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 4.8e-20 102.1 84 59.5
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 4.8e-20 102.1 153 43.8
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 6.3e-20 101.7 81 65.4
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 1.4e-19 100.5 78 55.1
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.8e-19 100.1 80 63.8
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 1.8e-19 100.1 132 43.9
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 2.4e-19 99.8 80 60.0
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 3.1e-19 99.4 79 54.4
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 4.1e-19 99.0 78 55.1
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 7.0e-19 98.2 112 63.4
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 7.0e-19 98.2 112 63.4
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.2e-18 97.4 79 60.8
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 1.2e-18 97.4 78 64.1
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 3.5e-18 95.9 79 62.0
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 3.5e-18 95.9 81 58.0
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 4.5e-18 95.5 78 55.1
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 5.9e-18 95.1 81 58.0
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 7.7e-18 94.7 79 60.8
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 7.7e-18 94.7 79 59.5
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 1.3e-17 94.0 81 59.3
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 2.2e-17 93.2 131 42.0
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 2.2e-17 93.2 80 60.0
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 5.0e-17 92.0 81 55.6
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 6.5e-17 91.7 73 60.3
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 6.5e-17 91.7 76 52.6
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 7.2e-16 88.2 77 54.5
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 2.3e-14 83.2 104 46.2
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.0e-13 80.1 154 36.4
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 2.6e-13 79.7 77 50.6
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 5.7e-13 78.6 65 63.1
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 5.7e-13 78.6 77 49.4
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 5.7e-13 78.6 77 49.4
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.1e-11 74.3 155 34.8
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 3.1e-11 72.8 61 59.0
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 1.2e-07 60.8 78 46.2


User provided reference genes

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