Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 4.9e-224 780.8 387 100.0
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 3.2e-199 698.4 387 89.1
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.7e-171 606.3 386 78.2
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 7.7e-169 597.4 383 78.9
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 4.2e-167 591.7 393 75.8
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 4.4e-164 581.6 388 75.5
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 1.0e-157 560.5 343 79.9
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 9.7e-156 553.9 391 70.1
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.3e-155 553.5 395 69.6
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 1.3e-155 553.5 395 70.1
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 5.3e-154 548.1 396 68.4
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.6e-153 546.6 400 69.2
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 1.1e-151 540.4 396 69.2
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 1.9e-151 539.7 394 67.5
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 2.5e-151 539.3 393 67.7
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 4.2e-151 538.5 393 66.7
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 4.2e-151 538.5 391 67.8
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 1.4e-149 533.5 392 66.3
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 2.8e-147 525.8 386 71.2
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 1.1e-146 523.9 386 70.5
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 5.9e-145 518.1 386 70.5
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 7.7e-145 517.7 386 70.5
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 1.2e-134 483.8 392 62.0
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.2e-134 483.8 395 61.0
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 3.6e-134 482.3 392 62.0
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 4.4e-132 475.3 397 60.7
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 4.4e-132 475.3 397 61.5
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 4.4e-132 475.3 398 61.1
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 6.3e-131 471.5 393 60.6
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 8.3e-131 471.1 398 60.3
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 1.4e-130 470.3 397 60.7
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 3.1e-130 469.2 397 60.2
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 5.4e-130 468.4 393 59.5
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 9.2e-130 467.6 393 61.1
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 1.6e-129 466.8 395 60.0
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 4.5e-129 465.3 397 59.7
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 1.0e-128 464.2 396 59.6
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 1.7e-128 463.4 398 58.5
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 1.7e-128 463.4 396 60.1
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 2.9e-128 462.6 390 59.0
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 2.9e-128 462.6 398 59.5
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.8e-128 462.2 396 59.3
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 1.1e-127 460.7 397 58.2
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 1.9e-127 459.9 396 58.3
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 2.5e-127 459.5 396 59.8
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 3.3e-127 459.1 392 61.0
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 4.3e-127 458.8 399 59.4
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 3.6e-126 455.7 398 58.5
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 8.9e-125 451.1 410 57.1
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.4e-124 449.1 402 56.5
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 7.5e-124 448.0 404 57.7
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 1.3e-123 447.2 402 57.2
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 1.7e-123 446.8 399 58.1
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 1.7e-123 446.8 397 57.7
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.2e-123 446.4 384 59.1
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 2.9e-123 446.0 401 58.6
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 2.9e-123 446.0 391 58.8
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 4.9e-123 445.3 401 57.4
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 6.4e-123 444.9 402 58.0
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 8.3e-123 444.5 396 57.6
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 7.0e-122 441.4 389 57.6
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 9.2e-122 441.0 402 56.7
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 9.2e-122 441.0 396 57.8
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 1.0e-120 437.6 412 53.9
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 3.9e-120 435.6 400 56.0
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 3.9e-120 435.6 400 56.0
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 5.0e-120 435.3 389 56.8
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 8.6e-120 434.5 404 56.7
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 1.5e-119 433.7 398 55.5
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 4.3e-119 432.2 397 57.4
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 5.6e-119 431.8 397 54.7
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 2.8e-118 429.5 404 56.7
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 3.6e-118 429.1 395 55.7
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 3.6e-118 429.1 397 54.2
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 4.7e-118 428.7 405 55.3
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 1.8e-117 426.8 395 55.7
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 5.2e-117 425.2 399 57.1
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 5.2e-117 425.2 397 56.4
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 8.9e-117 424.5 412 55.3
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 1.2e-116 424.1 401 53.9
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 2.6e-116 422.9 394 56.3
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 2.6e-116 422.9 397 55.2
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 4.4e-116 422.2 403 54.1
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 1.3e-115 420.6 402 53.5
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 1.7e-115 420.2 419 54.7
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 2.2e-115 419.9 417 53.7
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 1.9e-114 416.8 398 54.8
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 7.0e-114 414.8 474 50.2
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 7.0e-114 414.8 389 54.2
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 7.0e-114 414.8 396 56.3
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.2e-113 414.1 400 55.0
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 1.2e-113 414.1 394 53.3
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.2e-113 414.1 438 50.0
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.5e-113 412.5 397 56.2
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 7.8e-113 411.4 400 55.8
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 3.0e-112 409.5 398 51.8
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 8.6e-112 407.9 397 55.2
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.5e-111 407.1 439 50.1
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 9.5e-111 404.4 427 50.6
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 9.5e-111 404.4 427 50.6
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 2.1e-110 403.3 396 52.3
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 4.7e-110 402.1 354 57.6
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 4.7e-110 402.1 408 54.7
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.4e-109 400.6 388 54.4
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 1.8e-109 400.2 353 58.4
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 1.3e-107 394.0 332 59.6
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 3.7e-107 392.5 386 53.6
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 4.1e-106 389.0 399 53.1
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 1.2e-105 387.5 391 53.7
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 1.2e-105 387.5 405 50.6
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 2.7e-105 386.3 399 52.9
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 2.7e-105 386.3 396 51.8
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 2.3e-104 383.3 396 52.0
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 3.0e-104 382.9 387 53.2
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 3.6e-102 375.9 336 58.6
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 6.2e-102 375.2 387 51.7
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.1e-101 374.4 389 51.9
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 4.0e-101 372.5 387 51.7
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 3.4e-100 369.4 374 52.1
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 5.8e-100 368.6 259 72.6
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 2.9e-99 366.3 390 50.8
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 2.7e-97 359.8 378 52.1
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 5.1e-96 355.5 390 50.0
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 2.1e-94 350.1 329 53.8
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 2.4e-93 346.7 358 51.7
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 5.4e-90 335.5 376 50.0
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 5.4e-90 335.5 376 50.0
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 1.2e-89 334.3 376 49.7
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.5e-87 327.4 311 53.7
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 1.2e-84 317.8 243 62.6
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 4.9e-83 312.4 345 50.7
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 4.9e-83 312.4 310 51.6
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.1e-81 307.0 270 57.8
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 2.3e-80 303.5 264 60.2
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 5.6e-79 298.9 374 42.2
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 2.8e-78 296.6 328 48.8
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 4.0e-77 292.7 331 49.8
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 1.2e-76 291.2 396 43.9
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.5e-73 279.6 247 54.7
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.9e-72 276.2 255 54.1
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 1.6e-70 270.8 379 40.6
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.2e-70 268.9 231 57.6
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 3.8e-67 259.6 244 54.1
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 4.9e-67 259.2 386 39.1
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 8.4e-67 258.5 387 38.2
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 2.5e-66 256.9 394 40.1
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.7e-65 253.4 266 49.2
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 2.7e-65 253.4 288 49.0
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 2.7e-57 226.9 157 66.2
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 4.1e-53 213.0 353 40.2
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 6.1e-49 199.1 186 53.8
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 3.0e-48 196.8 419 31.7
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 5.7e-39 166.0 342 36.3
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 4.0e-32 143.3 222 37.8
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 8.8e-32 142.1 222 38.3
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 2.0e-31 141.0 117 64.1
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 2.6e-31 140.6 433 26.8
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 4.4e-31 139.8 109 61.5
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 5.3e-29 132.9 371 29.9
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 5.3e-29 132.9 111 61.3
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 5.3e-29 132.9 94 70.2
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 5.5e-26 122.9 108 56.5
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.2e-25 121.7 81 79.0
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 1.6e-25 121.3 68 80.9
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 1.2e-23 115.2 311 27.3
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 9.5e-18 95.5 130 43.8
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 4.5e-12 76.6 98 39.8
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 5.9e-12 76.3 101 42.6
BcaC07g41303 Brassica carinata HOM05D004977 ORTHO05D006454 9.5e-10 68.9 79 54.4
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 6.1e-09 66.2 60 55.0
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 1.0e-08 65.5 44 65.9
COL.COLO4_20881 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.0e-08 65.5 49 63.3
C02p60980 Brassica napus HOM05D003933 ORTHO05D004746 4.9e-06 56.6 52 61.5


User provided reference genes

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