Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G08240 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 1.2e-141 506.5 259 100.0
AL6G18640 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 3.7e-119 431.8 259 89.2
Carub.0006s0712 Capsella rubella HOM05D006433 ORTHO05D005382 1.4e-102 376.7 271 78.6
Thhalv10014452m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 6.6e-100 367.9 259 76.4
CARHR204930 Cardamine hirsuta HOM05D006433 ORTHO05D005382 3.8e-95 352.1 266 74.8
Sp6g34710 Schrenkiella parvula HOM05D006433 ORTHO05D005382 8.7e-92 340.9 263 70.3
A10p28440 Brassica napus HOM05D006433 ORTHO05D005382 2.5e-91 339.3 267 71.2
BraA10t44892Z Brassica rapa HOM05D006433 ORTHO05D005382 2.5e-91 339.3 267 71.2
BcaNung05094 Brassica carinata HOM05D006433 ORTHO05D005382 2.4e-78 296.2 261 65.5
BcaB08g37272 Brassica carinata HOM05D006433 ORTHO05D005382 2.1e-77 293.1 265 64.5
C09p68700 Brassica napus HOM05D006433 ORTHO05D005382 3.4e-72 275.8 265 61.9
BolC9t59616H Brassica oleracea HOM05D006433 ORTHO05D005382 9.9e-72 274.2 265 61.5
BcaB01g05621 Brassica carinata HOM05D006433 ORTHO05D005382 1.6e-69 266.9 231 66.2
BolC3t12950H Brassica oleracea HOM05D006433 ORTHO05D005382 1.6e-69 266.9 231 66.2
C03p04180 Brassica napus HOM05D006433 ORTHO05D005382 1.3e-68 263.8 231 67.1
BraA03t09717Z Brassica rapa HOM05D006433 ORTHO05D005382 3.9e-68 262.3 231 66.2
A03p03690 Brassica napus HOM05D006433 ORTHO05D005382 8.7e-68 261.2 231 66.2
Aa31LG3G18330 Aethionema arabicum HOM05D006433 ORTHO05D005382 1.5e-67 260.4 257 61.5
AL6G34350 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 4.8e-50 202.2 283 49.8
Aa31LG11G2650 Aethionema arabicum HOM05D006433 ORTHO05D005382 9.1e-49 198.0 276 51.4
AT5G23160 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 3.4e-48 196.1 282 49.3
CARHR190370 Cardamine hirsuta HOM05D006433 ORTHO05D005382 1.2e-45 187.6 280 48.6
Carub.0006s2095 Capsella rubella HOM05D006433 ORTHO05D005382 1.8e-44 183.7 268 49.3
BcaB07g29865 Brassica carinata HOM05D006433 ORTHO05D005382 3.3e-43 179.5 273 47.6
BcaC03g18036 Brassica carinata HOM05D006433 ORTHO05D005382 7.4e-43 178.3 263 46.4
A02p41140 Brassica napus HOM05D006433 ORTHO05D005382 1.4e-41 174.1 275 47.6
C02p61000 Brassica napus HOM05D006433 ORTHO05D005382 7.0e-41 171.8 263 46.0
BolC2t12149H Brassica oleracea HOM05D006433 ORTHO05D005382 7.7e-40 168.3 273 44.7
BraA02t09057Z Brassica rapa HOM05D006433 ORTHO05D005382 1.9e-38 163.7 275 45.1
Actinidia13713 Actinidia chinensis HOM05D006433 ORTHO05D005382 4.8e-26 122.5 279 37.6
Thhalv10005318m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 7.0e-25 118.6 156 50.0
Actinidia38416 Actinidia chinensis HOM05D006433 ORTHO05D005382 9.1e-25 118.2 281 38.1
Haze_11768 Corylus avellana HOM05D006433 ORTHO05D005382 4.5e-24 115.9 320 31.2
Cfa008752 Carpinus fangiana HOM05D006433 ORTHO05D005382 7.2e-22 108.6 320 32.8
Cpa.g.sc0.139 Carica papaya HOM05D006433 ORTHO05D005382 2.1e-21 107.1 295 31.9
CiPaw.05G169900 Carya illinoinensis HOM05D006433 ORTHO05D005382 2.1e-21 107.1 313 31.6
TAR629G0072 Trochodendron aralioides HOM05D006433 ORTHO05D005382 6.1e-21 105.5 276 31.2
Thecc.02G159800 Theobroma cacao HOM05D006433 ORTHO05D005382 1.0e-20 104.8 296 32.8
Duzib132G0593 Durio zibethinus HOM05D006433 ORTHO05D005382 6.8e-20 102.1 304 32.6
TAR371G0604 Trochodendron aralioides HOM05D006433 ORTHO05D005382 9.8e-19 98.2 306 28.8
Potri.005G092400 Populus trichocarpa HOM05D006433 ORTHO05D005382 1.7e-18 97.4 289 30.8
Gorai.005G210800 Gossypium raimondii HOM05D006433 ORTHO05D005382 3.7e-18 96.3 287 32.8
Nitab4.5_0005356g0050 Nicotiana tabacum HOM05D006433 ORTHO05D005382 4.8e-18 95.9 297 32.3
Ciclev10031878m.g Citrus clementina HOM05D006433 ORTHO05D005382 8.3e-18 95.1 112 48.2
Gohir.A03G164900 Gossypium hirsutum HOM05D006433 ORTHO05D005382 8.3e-18 95.1 285 32.6
Sabra05G0076500 Salix brachista HOM05D006433 ORTHO05D005382 1.1e-17 94.7 290 30.0
Gohir.D02G188100 Gossypium hirsutum HOM05D006433 ORTHO05D005382 2.4e-17 93.6 287 32.8
MD13G1005200 Malus domestica HOM05D006433 ORTHO05D005382 4.1e-17 92.8 101 50.5
TWI74G1071 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 5.4e-17 92.4 276 33.0
Manes.03G007400 Manihot esculenta HOM05D006433 ORTHO05D005382 1.2e-16 91.3 293 30.7
MD16G1002700 Malus domestica HOM05D006433 ORTHO05D005382 2.0e-16 90.5 99 50.5
COL.COLO4_03341 Corchorus olitorius HOM05D006433 ORTHO05D005382 2.7e-16 90.1 308 30.2
Potri.007G071900 Populus trichocarpa HOM05D006433 ORTHO05D005382 2.7e-16 90.1 291 31.3
Nitab4.5_0000771g0160 Nicotiana tabacum HOM05D006433 ORTHO05D005382 4.5e-16 89.4 80 55.0
PGSC0003DMG400032563 Solanum tuberosum HOM05D006433 ORTHO05D005382 4.5e-16 89.4 304 30.9
Solyc04g009305.1 Solanum lycopersicum HOM05D006433 ORTHO05D005382 5.9e-16 89.0 300 29.7
Thhalv10005437m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 7.7e-16 88.6 120 50.0
TWI77G0994 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 7.7e-16 88.6 271 31.7
Prupe.1G347600 Prunus persica HOM05D006433 ORTHO05D005382 1.0e-15 88.2 80 57.5
Manes.11G107400 Manihot esculenta HOM05D006433 ORTHO05D005382 2.3e-15 87.0 297 31.6
TPR.G39976 Trifolium pratense HOM05D006433 ORTHO05D005382 5.0e-15 85.9 265 30.6
Glyma.09G282600 Glycine max HOM05D006433 ORTHO05D005382 1.1e-14 84.7 82 48.8
Lalb_Chr10g0094961 Lupinus albus HOM05D006433 ORTHO05D005382 1.5e-14 84.3 263 30.8
RcHm_v2.0_Chr4g0446731 Rosa chinensis HOM05D006433 ORTHO05D005382 1.5e-14 84.3 80 50.0
Cc11_g02400 Coffea canephora HOM05D006433 ORTHO05D005382 1.9e-14 84.0 92 50.0
Duzib248G0841 Durio zibethinus HOM05D006433 ORTHO05D005382 2.5e-14 83.6 308 30.5
Medtr1g037520 Medicago truncatula HOM05D006433 ORTHO05D005382 3.3e-14 83.2 85 48.2
Eucgr.G02576 Eucalyptus grandis HOM05D006433 ORTHO05D005382 4.2e-14 82.8 86 50.0
Sopen04g004420 Solanum pennellii HOM05D006433 ORTHO05D005382 5.5e-14 82.4 80 53.8
arahy.Tifrunner.gnm1.ann1.0GGX7L Arachis hypogaea HOM05D006433 ORTHO05D005382 9.5e-14 81.6 213 31.5
DCAR_002584 Daucus carota HOM05D006433 ORTHO05D005382 1.6e-13 80.9 101 43.6
Gorai.008G148300 Gossypium raimondii HOM05D006433 ORTHO05D005382 2.1e-13 80.5 287 32.1
Gohir.D12G137000 Gossypium hirsutum HOM05D006433 ORTHO05D005382 3.6e-13 79.7 285 32.3
MBI06_g16016_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 3.6e-13 79.7 101 42.6
QL03p044176 Quercus lobata HOM05D006433 ORTHO05D005382 3.6e-13 79.7 79 53.2
Sabra07G0060600 Salix brachista HOM05D006433 ORTHO05D005382 4.7e-13 79.3 293 29.7
FvH4_4g36960 Fragaria vesca HOM05D006433 ORTHO05D005382 8.0e-13 78.6 92 45.7
FAN12G0758 Fragaria x ananassa HOM05D006433 ORTHO05D005382 8.0e-13 78.6 92 45.7
Lsat_1_v5_gn_3_35360 Lactuca sativa HOM05D006433 ORTHO05D005382 8.0e-13 78.6 297 28.3
Lj2g0006429 Lotus japonicus HOM05D006433 ORTHO05D005382 8.0e-13 78.6 252 29.0
FAN07G1145 Fragaria x ananassa HOM05D006433 ORTHO05D005382 1.8e-12 77.4 92 45.7
PGR142G2540 Punica granatum HOM05D006433 ORTHO05D005382 2.3e-12 77.0 326 26.4
arahy.Tifrunner.gnm1.ann1.X1AWTF Arachis hypogaea HOM05D006433 ORTHO05D005382 3.0e-12 76.6 91 41.8
Lj6A717T151 Lonicera japonica HOM05D006433 ORTHO05D005382 3.0e-12 76.6 253 30.0
Nitab4.5_0002132g0010 Nicotiana tabacum HOM05D006433 ORTHO05D005382 3.0e-12 76.6 296 28.4
MBI03_g09362_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 5.2e-12 75.9 295 26.4
VMungo0251G3481 Vigna mungo HOM05D006433 ORTHO05D005382 5.2e-12 75.9 83 44.6
Glyma.20G002800 Glycine max HOM05D006433 ORTHO05D005382 6.8e-12 75.5 82 47.6
Gohir.A12G133500 Gossypium hirsutum HOM05D006433 ORTHO05D005382 6.8e-12 75.5 286 31.1
Psat6g135800 Pisum sativum HOM05D006433 ORTHO05D005382 8.9e-12 75.1 85 41.2
ATR0618G439 Amborella trichopoda HOM05D006433 ORTHO05D005382 1.2e-11 74.7 116 37.1
CiPaw.06G061400 Carya illinoinensis HOM05D006433 ORTHO05D005382 1.5e-11 74.3 89 42.7
ECA246G5167 Erigeron canadensis HOM05D006433 ORTHO05D005382 3.4e-11 73.2 257 30.7
SGA_v2.0_scaffold6G03215 Striga asiatica HOM05D006433 ORTHO05D005382 1.7e-10 70.9 106 36.8
CANSAT56G2818 Cannabis sativa HOM05D006433 ORTHO05D005382 6.3e-10 68.9 290 28.6
DCAR_026896 Daucus carota HOM05D006433 ORTHO05D005382 6.3e-10 68.9 142 33.1
Sabra16G0271700 Salix brachista HOM05D006433 ORTHO05D005382 6.3e-10 68.9 99 31.3
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 6.3e-10 68.9 99 31.3
Sc06g0007710 Simmondsia chinensis HOM05D006433 ORTHO05D005382 6.3e-10 68.9 278 30.6
FAN17G1725 Fragaria x ananassa HOM05D006433 ORTHO05D005382 2.4e-09 67.0 220 27.3
Phvul.003G005000 Phaseolus vulgaris HOM05D006433 ORTHO05D005382 4.1e-09 66.2 82 45.1
AUR62017700 Chenopodium quinoa HOM05D006433 ORTHO05D005382 5.4e-09 65.9 266 27.8
AUR62032989 Chenopodium quinoa HOM05D006433 ORTHO05D005382 7.0e-09 65.5 263 29.3
MSTRG.13683 Avicennia marina HOM05D006433 ORTHO05D005382 3.5e-08 63.2 103 35.9
SalBow2G0414 Salvia bowleyana HOM05D006433 ORTHO05D005382 3.5e-08 63.2 81 40.7
DCAR_025546 Daucus carota HOM05D006433 ORTHO05D005382 7.8e-08 62.0 97 37.1
arahy.Tifrunner.gnm1.ann1.48DCIV Arachis hypogaea HOM05D056638 ORTHO05D005382 1.3e-07 61.2 241 29.0
Migut.E00694 Erythranthe guttata HOM05D006433 ORTHO05D005382 1.7e-07 60.8 130 28.5
Nn1g03826 Nelumbo nucifera HOM05D008701 ORTHO05D005382 2.3e-07 60.5 76 39.5
Potri.001G408900 Populus trichocarpa HOM05D006433 ORTHO05D005382 2.3e-07 60.5 92 32.6
Actinidia09967 Actinidia chinensis HOM05D006433 ORTHO05D005382 8.6e-07 58.5 124 29.8
Oeu013185.1 Olea europaea HOM05D006433 ORTHO05D005382 1.1e-06 58.2 80 40.0
TWI39G0991 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 1.1e-06 58.2 75 37.3
ClCG09G004510 Citrullus lanatus HOM05D027220 ORTHO05D005382 3.3e-06 56.6 293 25.9
C06p10910 Brassica napus HOM05D000977 ORTHO05D001094 5.6e-06 55.8 99 42.4
TAR011G0003 Trochodendron aralioides HOM05D008701 ORTHO05D010238 7.3e-06 55.5 91 34.1
DCAR_023460 Daucus carota HOM05D006433 ORTHO05D005382 9.5e-06 55.1 60 50.0
Dinv02575 Davidia involucrata HOM05D008701 ORTHO05D028399 9.5e-06 55.1 157 29.9
TWI38G1693 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 9.5e-06 55.1 75 33.3


User provided reference genes

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