Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G08141 Arabidopsis thaliana HOM05D000754 ORTHO05D000169 1.9e-69 265.8 138 100.0
AL6G18530 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 9.1e-32 140.6 102 78.4
Carub.0006s0704 Capsella rubella HOM05D000754 ORTHO05D000169 8.0e-28 127.5 140 58.6
CARHR205040 Cardamine hirsuta HOM05D000754 ORTHO05D000169 2.5e-21 105.9 108 64.8
Aa31LG11G2450 Aethionema arabicum HOM05D000754 ORTHO05D000169 2.4e-16 89.4 87 63.2
THA.LOC104818363 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 1.6e-15 86.7 92 62.0
BolC3t12943H Brassica oleracea HOM05D000754 ORTHO05D000169 4.6e-15 85.1 113 51.3
BraA03t09711Z Brassica rapa HOM05D000754 ORTHO05D000169 6.0e-15 84.7 89 57.3
THA.LOC104800974 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 1.7e-14 83.2 92 56.5
A03p03630 Brassica napus HOM05D000754 ORTHO05D000169 3.0e-14 82.4 117 50.4
AT5G60830 Arabidopsis thaliana HOM05D000754 ORTHO05D000169 1.5e-13 80.1 105 53.3
C03p04110 Brassica napus HOM05D000754 ORTHO05D000169 1.9e-13 79.7 106 52.8
A03p46530 Brassica napus HOM05D000754 ORTHO05D000169 2.5e-13 79.3 98 56.1
BraA03t13777Z Brassica rapa HOM05D000754 ORTHO05D000169 2.5e-13 79.3 98 56.1
BcaB01g05627 Brassica carinata HOM05D000754 ORTHO05D000169 3.3e-13 79.0 100 54.0
BcaB04g19891 Brassica carinata HOM05D000754 ORTHO05D000169 5.6e-13 78.2 97 51.5
BcaB04g19892 Brassica carinata HOM05D000754 ORTHO05D000169 5.6e-13 78.2 97 51.5
Sp2g24150 Schrenkiella parvula HOM05D000754 ORTHO05D000169 5.6e-13 78.2 98 56.1
C09p07940 Brassica napus HOM05D000754 ORTHO05D000169 7.3e-13 77.8 120 45.8
BolC2t12159H Brassica oleracea HOM05D000754 ORTHO05D000169 7.3e-13 77.8 89 57.3
C02p61100 Brassica napus HOM05D000754 ORTHO05D000169 9.5e-13 77.4 115 48.7
BcaC06g33197 Brassica carinata HOM05D000754 ORTHO05D000169 1.2e-12 77.0 71 64.8
BcaNung05760 Brassica carinata HOM05D000754 ORTHO05D000169 1.2e-12 77.0 71 64.8
BolC7t44980H Brassica oleracea HOM05D000754 ORTHO05D000169 2.8e-12 75.9 92 56.5
Gohir.D12G187100 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.8e-12 75.9 107 50.5
Gorai.008G200600 Gossypium raimondii HOM05D000754 ORTHO05D000169 2.8e-12 75.9 107 50.5
Thecc.03G110700 Theobroma cacao HOM05D000754 ORTHO05D000169 4.7e-12 75.1 113 47.8
BcaC03g18047 Brassica carinata HOM05D000754 ORTHO05D000169 6.2e-12 74.7 115 47.0
BcaNung02619 Brassica carinata HOM05D000754 ORTHO05D000169 6.2e-12 74.7 90 54.4
C07p44590 Brassica napus HOM05D000754 ORTHO05D000169 6.2e-12 74.7 90 54.4
AL8G37430 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 8.1e-12 74.3 72 63.9
BcaC04g23478 Brassica carinata HOM05D000754 ORTHO05D000169 8.1e-12 74.3 128 43.8
A09p07080 Brassica napus HOM05D000754 ORTHO05D000169 8.1e-12 74.3 128 44.5
BolC9t53706H Brassica oleracea HOM05D000754 ORTHO05D000169 8.1e-12 74.3 128 43.8
Gohir.A12G184400 Gossypium hirsutum HOM05D000754 ORTHO05D000169 8.1e-12 74.3 107 50.5
Manes.06G079700 Manihot esculenta HOM05D000754 ORTHO05D000169 8.1e-12 74.3 70 65.7
COL.COLO4_28833 Corchorus olitorius HOM05D000754 ORTHO05D000169 1.1e-11 73.9 85 56.5
Duzib205G1066 Durio zibethinus HOM05D000754 ORTHO05D000169 2.3e-11 72.8 113 46.0
Thhalv10005347m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 2.3e-11 72.8 86 53.5
A02p41220 Brassica napus HOM05D000754 ORTHO05D000169 6.8e-11 71.2 115 47.0
BraA09t36357Z Brassica rapa HOM05D000754 ORTHO05D000169 6.8e-11 71.2 128 43.0
AL269U10024 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 8.9e-11 70.9 70 61.4
AL3G41410 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 8.9e-11 70.9 72 61.1
Potri.015G047700 Populus trichocarpa HOM05D000754 ORTHO05D000169 8.9e-11 70.9 69 65.2
Duzib068G0124 Durio zibethinus HOM05D000754 ORTHO05D000169 2.0e-10 69.7 85 54.1
PGR044G1879 Punica granatum HOM05D000754 ORTHO05D000169 3.4e-10 68.9 83 56.6
Sabra15G0079300 Salix brachista HOM05D000754 ORTHO05D000169 3.4e-10 68.9 69 62.3
Eucgr.K02632 Eucalyptus grandis HOM05D000754 ORTHO05D000169 4.4e-10 68.6 85 57.6
Ciclev10024105m.g Citrus clementina HOM05D000754 ORTHO05D000169 1.3e-09 67.0 102 48.0
FvH4_6g20610 Fragaria vesca HOM05D000754 ORTHO05D000169 2.9e-09 65.9 69 60.9
FAN05G2190 Fragaria x ananassa HOM05D000754 ORTHO05D000169 2.9e-09 65.9 69 60.9
FAN05G2993 Fragaria x ananassa HOM05D000754 ORTHO05D000169 2.9e-09 65.9 69 60.9
FAN14G2119 Fragaria x ananassa HOM05D000754 ORTHO05D000169 2.9e-09 65.9 69 60.9
FvH4_5g13260 Fragaria vesca HOM05D000754 ORTHO05D000169 4.9e-09 65.1 77 51.9
FAN02G2472 Fragaria x ananassa HOM05D000754 ORTHO05D000169 4.9e-09 65.1 69 59.4
FAN18G1320 Fragaria x ananassa HOM05D000754 ORTHO05D000169 1.1e-08 63.9 77 51.9
CARHR274510 Cardamine hirsuta HOM05D000754 ORTHO05D000169 1.9e-08 63.2 121 43.0
FAN08G0941 Fragaria x ananassa HOM05D000754 ORTHO05D000169 4.1e-08 62.0 68 54.4
CsaV3_1G006310 Cucumis sativus L. HOM05D029639 ORTHO05D028900 7.1e-08 61.2 101 43.6
Ah.14g088020 Amaranthus hybridus HOM05D000754 ORTHO05D000169 2.1e-07 59.7 90 44.4
Cpa.g.sc3.213 Carica papaya HOM05D000754 ORTHO05D000169 3.5e-07 58.9 83 49.4
EL10Ac8g20053 Beta vulgaris HOM05D000754 ORTHO05D000169 1.7e-06 56.6 95 43.2
AUR62012705 Chenopodium quinoa HOM05D000754 ORTHO05D000169 2.3e-06 56.2 66 51.5
AUR62021950 Chenopodium quinoa HOM05D000754 ORTHO05D000169 2.3e-06 56.2 66 51.5
Actinidia35056 Actinidia chinensis HOM05D000754 ORTHO05D000169 3.0e-06 55.8 67 50.7
Phvul.009G204300 Phaseolus vulgaris HOM05D000754 ORTHO05D000169 3.9e-06 55.5 68 52.9
Ca_21747_v3 Cicer arietinum L. HOM05D000754 ORTHO05D000169 6.6e-06 54.7 95 43.2
Lalb_Chr13g0302631 Lupinus albus HOM05D000754 ORTHO05D000169 6.6e-06 54.7 101 44.6


User provided reference genes

Program Settings