Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G08040 Arabidopsis thaliana HOM05D007944 ORTHO05D010014 1.1e-23 112.5 55 100.0
AL6G18390 Arabidopsis lyrata HOM05D007944 ORTHO05D010014 4.9e-21 103.6 55 89.1
Carub.0006s0693 Capsella rubella HOM05D007944 ORTHO05D010014 7.1e-20 99.8 55 83.6
Thhalv10015226m.g Eutrema salsugineum HOM05D007944 ORTHO05D010014 2.7e-19 97.8 55 83.6
C09p68880 Brassica napus HOM05D007944 ORTHO05D010014 6.7e-18 93.2 55 76.4
CARHR205140 Cardamine hirsuta HOM05D007944 ORTHO05D010014 6.7e-18 93.2 53 77.4
BolC9t59634H Brassica oleracea HOM05D007944 ORTHO05D010014 3.3e-17 90.9 55 74.5
Sp6g34910 Schrenkiella parvula HOM05D000813 ORTHO05D004282 4.3e-17 90.5 52 76.9
C02p03390 Brassica napus HOM05D007944 ORTHO05D010014 1.3e-16 89.0 55 70.9
BolC2t06301H Brassica oleracea HOM05D007944 ORTHO05D010014 1.3e-16 89.0 55 70.9
BraA02t04940Z Brassica rapa HOM05D007944 ORTHO05D010014 1.3e-16 89.0 55 70.9
BcaB05g21585 Brassica carinata HOM05D007944 ORTHO05D010014 1.6e-16 88.6 55 69.1
A03p03550 Brassica napus HOM05D007944 ORTHO05D010014 1.6e-16 88.6 55 70.9
BraA03t09705Z Brassica rapa HOM05D007944 ORTHO05D010014 1.6e-16 88.6 55 70.9
BcaB01g05641 Brassica carinata HOM05D007944 ORTHO05D010014 2.1e-16 88.2 55 70.9
BcaB01g05682 Brassica carinata HOM05D007944 ORTHO05D010014 2.1e-16 88.2 55 69.1
BolC3t12937H Brassica oleracea HOM05D007944 ORTHO05D010014 2.1e-16 88.2 55 70.9
BcaC03g13205 Brassica carinata HOM05D007944 ORTHO05D010014 3.7e-16 87.4 55 69.1
BcaB08g37295 Brassica carinata HOM05D007944 ORTHO05D010014 4.8e-16 87.0 55 69.1
THA.LOC109116171 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 4.8e-16 87.0 55 72.7
Thecc.03G102900 Theobroma cacao HOM05D007944 ORTHO05D010014 8.2e-16 86.3 55 67.3
BraA10t44908Z Brassica rapa HOM05D007944 ORTHO05D010014 1.1e-15 85.9 52 69.2
Potri.015G058500 Populus trichocarpa HOM05D007944 ORTHO05D010014 1.1e-15 85.9 55 65.5
C03p04000 Brassica napus HOM05D007944 ORTHO05D010014 1.8e-15 85.1 55 69.1
COL.COLO4_24344 Corchorus olitorius HOM05D007944 ORTHO05D010014 1.8e-15 85.1 55 67.3
THA.LOC104818349 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 2.4e-15 84.7 55 69.1
Ciclev10023235m.g Citrus clementina HOM05D007944 ORTHO05D010014 5.3e-15 83.6 55 67.3
PGR083G1417 Punica granatum HOM05D007944 ORTHO05D010014 5.3e-15 83.6 55 65.5
CSS0002657 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 6.9e-15 83.2 55 63.6
CSS0037671 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 6.9e-15 83.2 55 63.6
Duzib084G0160 Durio zibethinus HOM05D007944 ORTHO05D010014 9.0e-15 82.8 55 61.8
Gohir.A03G070400 Gossypium hirsutum HOM05D007944 ORTHO05D010014 1.5e-14 82.0 55 61.8
Manes.06G083900 Manihot esculenta HOM05D007944 ORTHO05D010014 1.5e-14 82.0 55 63.6
PGSC0003DMG400024536 Solanum tuberosum HOM05D007944 ORTHO05D010014 2.0e-14 81.6 55 60.0
Gohir.D03G096800 Gossypium hirsutum HOM05D007944 ORTHO05D010014 2.6e-14 81.3 55 61.8
Gorai.003G101600 Gossypium raimondii HOM05D007944 ORTHO05D010014 2.6e-14 81.3 55 61.8
Hma1.2p1_0060F.1_g033020 Hydrangea macrophylla HOM05D007944 ORTHO05D010014 2.6e-14 81.3 55 58.2
A10p28590 Brassica napus HOM05D007944 ORTHO05D010014 5.8e-14 80.1 52 71.2
HanXRQChr04g0110041 Helianthus annuus HOM05D007944 ORTHO05D010014 1.3e-13 79.0 55 60.0
Aa31LG3G18500 Aethionema arabicum HOM05D000813 ORTHO05D004282 2.2e-13 78.2 48 72.9
CiPaw.11G054400 Carya illinoinensis HOM05D007944 ORTHO05D010014 2.9e-13 77.8 55 61.8
CAN.G1228.17 Capsicum annuum HOM05D007944 ORTHO05D010014 3.8e-13 77.4 55 58.2
Duzib205G1703 Durio zibethinus HOM05D007944 ORTHO05D010014 6.5e-13 76.6 55 60.0
Lsat_1_v5_gn_1_14420 Lactuca sativa HOM05D007944 ORTHO05D010014 6.5e-13 76.6 55 60.0
Migut.D01638 Erythranthe guttata HOM05D007944 ORTHO05D010014 8.4e-13 76.3 55 58.2
Lalb_Chr13g0302811 Lupinus albus HOM05D007944 ORTHO05D010014 8.4e-13 76.3 55 61.8
Sc12g0007040 Simmondsia chinensis HOM05D007944 ORTHO05D010014 1.1e-12 75.9 52 57.7
GSVIVG01008105001 Vitis vinifera HOM05D007944 ORTHO05D010014 1.4e-12 75.5 55 54.5
CANSAT56G0188 Cannabis sativa HOM05D007944 ORTHO05D010014 4.2e-12 73.9 55 56.4
MD06G1225800 Malus domestica HOM05D007944 ORTHO05D010014 9.3e-12 72.8 50 66.0
MD14G1212700 Malus domestica HOM05D007944 ORTHO05D010014 9.3e-12 72.8 50 66.0
TWI60G0934 Tripterygium wilfordii HOM05D007944 ORTHO05D010014 1.6e-11 72.0 55 58.2
ClCG04G011750 Citrullus lanatus HOM05D007944 ORTHO05D010014 2.1e-11 71.6 49 63.3
MELO3C002035.2 Cucumis melo HOM05D007944 ORTHO05D010014 2.1e-11 71.6 49 63.3
Phvul.003G184100 Phaseolus vulgaris HOM05D007944 ORTHO05D010014 2.1e-11 71.6 55 54.5
Prupe.5G206000 Prunus persica HOM05D007944 ORTHO05D010014 2.1e-11 71.6 55 58.2
Lj4g0027267 Lotus japonicus HOM05D007944 ORTHO05D010014 3.5e-11 70.9 55 56.4
Lalb_Chr12g0197241 Lupinus albus HOM05D007944 ORTHO05D010014 4.6e-11 70.5 55 54.5
HanXRQChr02g0044781 Helianthus annuus HOM05D007944 ORTHO05D010014 7.9e-11 69.7 46 60.9
TAR629G2843 Trochodendron aralioides HOM05D007944 ORTHO05D010014 7.9e-11 69.7 49 55.1
Ca_21766_v3 Cicer arietinum L. HOM05D007944 ORTHO05D010014 1.3e-10 68.9 55 58.2
Glyma.05G020300 Glycine max HOM05D007944 ORTHO05D010014 1.8e-10 68.6 55 52.7
Glyma.17G079100 Glycine max HOM05D007944 ORTHO05D010014 1.8e-10 68.6 55 52.7
Nn3g17462 Nelumbo nucifera HOM05D007944 ORTHO05D010014 1.8e-10 68.6 55 54.5
FvH4_5g13750 Fragaria vesca HOM05D007944 ORTHO05D010014 2.3e-10 68.2 55 58.2
RcHm_v2.0_Chr7g0183191 Rosa chinensis HOM05D007944 ORTHO05D010014 2.3e-10 68.2 55 52.7
Medtr4g109610 Medicago truncatula HOM05D007944 ORTHO05D010014 3.0e-10 67.8 55 52.7
Sed0006151 Sechium edule HOM05D007944 ORTHO05D010014 5.1e-10 67.0 49 55.1
Psat4g047680 Pisum sativum HOM05D007944 ORTHO05D010014 2.5e-09 64.7 55 50.9
Os12g0575200 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 1.3e-08 62.4 55 47.3
CsaV3_1G006040 Cucumis sativus L. HOM05D007944 ORTHO05D010014 1.6e-08 62.0 38 71.1
Pp3c3_35330 Physcomitrium patens HOM05D007944 ORTHO05D010014 4.8e-08 60.5 49 55.1
Aqoxy3G03680 Aquilegia oxysepala HOM05D007944 ORTHO05D010014 3.1e-07 57.8 55 47.3
Sed0010401 Sechium edule HOM05D007944 ORTHO05D010014 4.1e-07 57.4 45 51.1
Pp3c12_23850 Physcomitrium patens HOM05D007944 ORTHO05D010014 5.3e-07 57.0 48 52.1
Os03g0603500 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 1.0e-05 52.8 48 43.8


User provided reference genes

Program Settings