Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.6e-68 263.1 176 100.0
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.0e-55 219.5 177 90.4
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 5.0e-51 204.9 177 85.9
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.2e-44 183.7 177 71.2
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.0e-44 183.0 177 74.6
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 2.3e-43 179.5 176 79.5
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 2.5e-42 176.0 176 78.4
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 2.5e-42 176.0 177 68.4
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 4.3e-42 175.3 176 77.8
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 5.6e-42 174.9 176 68.8
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 7.3e-42 174.5 176 67.6
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 6.2e-41 171.4 175 68.0
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 8.1e-41 171.0 182 66.5
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 1.5e-39 166.8 178 75.3
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 2.0e-39 166.4 178 75.3
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 2.0e-39 166.4 178 75.3
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 2.6e-39 166.0 178 74.7
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 4.4e-39 165.2 166 68.1
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 4.4e-39 165.2 166 68.1
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 4.4e-39 165.2 166 68.1
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 1.7e-38 163.3 179 74.3
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.4e-37 159.5 178 64.0
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 3.2e-37 159.1 162 66.7
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 6.0e-36 154.8 176 63.1
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 1.0e-35 154.1 176 56.8
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 3.9e-35 152.1 176 69.9
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 3.9e-35 152.1 176 55.7
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 3.9e-35 152.1 176 63.1
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 3.9e-35 152.1 159 67.3
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 5.1e-35 151.8 173 70.5
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 6.6e-35 151.4 173 60.7
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 6.6e-35 151.4 167 70.1
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 8.6e-35 151.0 167 70.1
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 8.6e-35 151.0 167 70.1
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 1.1e-34 150.6 167 62.9
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 1.5e-34 150.2 167 62.9
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.9e-34 149.8 171 60.8
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 1.9e-34 149.8 159 74.8
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 2.5e-34 149.4 164 64.6
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 2.5e-34 149.4 173 67.1
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 4.3e-34 148.7 176 65.3
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 4.3e-34 148.7 178 70.2
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 4.3e-34 148.7 168 60.1
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 7.3e-34 147.9 151 67.5
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 9.5e-34 147.5 154 66.2
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 1.2e-33 147.1 176 71.6
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 1.2e-33 147.1 176 71.6
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 1.2e-33 147.1 159 59.7
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 1.2e-33 147.1 171 61.4
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.2e-33 147.1 176 67.6
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.6e-33 146.7 176 56.2
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 2.1e-33 146.4 174 69.5
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 2.8e-33 146.0 153 73.2
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 3.6e-33 145.6 178 47.8
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 3.6e-33 145.6 176 59.1
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 4.7e-33 145.2 176 55.1
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.7e-33 145.2 176 55.1
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.7e-33 145.2 176 55.1
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 6.2e-33 144.8 162 66.7
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.4e-32 143.7 178 66.9
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 4.0e-32 142.1 161 74.5
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 5.2e-32 141.7 161 72.0
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 8.9e-32 141.0 173 53.2
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 1.2e-31 140.6 176 67.0
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 1.5e-31 140.2 176 68.8
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 2.0e-31 139.8 175 69.7
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 2.0e-31 139.8 173 59.5
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 3.4e-31 139.0 173 60.7
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 5.8e-31 138.3 176 67.0
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 7.6e-31 137.9 159 61.0
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 9.9e-31 137.5 176 54.5
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 9.9e-31 137.5 176 65.3
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.3e-30 137.1 159 61.6
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 1.7e-30 136.7 175 68.0
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 1.7e-30 136.7 167 55.1
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 2.9e-30 136.0 176 66.5
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 2.9e-30 136.0 176 63.6
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 2.9e-30 136.0 168 58.3
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 3.8e-30 135.6 159 62.9
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 3.8e-30 135.6 175 57.7
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 3.8e-30 135.6 156 67.3
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 3.8e-30 135.6 168 54.8
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 3.8e-30 135.6 176 65.3
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 4.9e-30 135.2 160 66.2
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 4.9e-30 135.2 176 66.5
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 1.4e-29 133.7 164 70.7
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 1.4e-29 133.7 157 69.4
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 1.4e-29 133.7 176 64.8
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 2.4e-29 132.9 153 62.7
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 2.4e-29 132.9 159 50.3
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 5.4e-29 131.7 159 61.6
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 7.1e-29 131.3 175 59.4
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 9.2e-29 131.0 157 67.5
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.6e-28 130.2 160 59.4
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 2.1e-28 129.8 171 66.1
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 2.7e-28 129.4 162 45.7
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.7e-28 129.4 160 46.9
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 2.7e-28 129.4 148 66.9
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.5e-28 129.0 172 45.3
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 4.6e-28 128.6 143 68.5
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 6.0e-28 128.3 160 46.2
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 6.0e-28 128.3 169 62.7
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.0e-27 127.5 158 69.0
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.0e-27 127.5 158 69.0
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.3e-27 127.1 167 52.1
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.7e-27 126.7 159 60.4
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 2.3e-27 126.3 163 65.0
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 2.3e-27 126.3 171 58.5
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 3.0e-27 125.9 241 35.3
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 5.1e-27 125.2 154 58.4
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 5.1e-27 125.2 165 66.7
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 5.1e-27 125.2 159 60.4
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 5.1e-27 125.2 159 60.4
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 6.6e-27 124.8 174 64.4
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 8.7e-27 124.4 165 66.7
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 8.7e-27 124.4 159 60.4
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 1.1e-26 124.0 176 61.9
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 1.9e-26 123.2 148 73.6
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 3.3e-26 122.5 169 44.4
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 4.3e-26 122.1 165 53.9
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 4.3e-26 122.1 151 58.9
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 9.6e-26 120.9 166 63.9
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.2e-25 120.6 168 63.1
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.1e-25 119.8 161 51.6
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 3.6e-25 119.0 155 41.3
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.6e-25 119.0 165 62.4
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 3.6e-25 119.0 159 64.8
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 6.2e-25 118.2 165 61.8
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 6.2e-25 118.2 168 49.4
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 2.4e-24 116.3 161 49.7
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 3.1e-24 115.9 160 48.1
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 6.9e-24 114.8 154 56.5
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 4.4e-23 112.1 144 70.8
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 7.6e-23 111.3 160 63.8
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.2e-22 109.8 176 56.8
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.8e-22 109.0 175 64.0
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 6.9e-16 88.2 79 51.9
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 5.8e-15 85.1 124 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 9.9e-15 84.3 111 38.7
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 2.9e-14 82.8 79 50.6
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 2.9e-14 82.8 130 48.5
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 3.8e-14 82.4 130 50.0
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 2.4e-13 79.7 103 70.9
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 5.4e-13 78.6 52 59.6
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 2.1e-12 76.6 141 44.0
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 2.3e-11 73.2 121 50.4
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 6.7e-11 71.6 114 56.1
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 2.5e-10 69.7 90 68.9
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 2.5e-10 69.7 110 50.0
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 8.4e-06 54.7 55 50.9


User provided reference genes

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