Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 0.0e+00 1206.8 612 100.0
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 7.1e-270 933.7 523 90.8
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 8.7e-260 900.2 523 88.3
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 4.2e-246 854.7 524 83.2
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 4.8e-242 841.3 526 81.9
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 2.4e-241 839.0 538 80.7
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 3.1e-241 838.6 526 81.7
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 3.1e-241 838.6 538 80.7
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 5.3e-241 837.8 526 82.7
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 2.6e-240 835.5 526 82.3
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 5.5e-238 827.8 510 82.5
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 3.8e-231 805.1 518 77.6
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 2.0e-227 792.7 641 67.2
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 2.6e-227 792.3 630 68.4
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 1.3e-223 780.0 516 78.9
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 1.3e-218 763.5 521 75.2
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 2.5e-214 749.2 513 71.2
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 4.7e-213 745.0 510 72.5
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 1.0e-212 743.8 510 72.4
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 9.2e-209 730.7 512 70.3
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 2.0e-208 729.6 493 78.5
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 7.8e-208 727.6 510 69.6
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 1.0e-207 727.2 510 69.0
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.0e-207 727.2 518 68.9
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 2.3e-207 726.1 526 69.2
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 8.6e-207 724.2 509 70.3
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.1e-206 723.8 517 69.8
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.5e-206 723.4 516 70.5
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 1.9e-206 723.0 537 67.2
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 7.3e-206 721.1 513 70.2
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 7.3e-206 721.1 510 68.8
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 7.3e-206 721.1 510 69.2
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 2.1e-205 719.5 515 68.3
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 2.8e-205 719.2 519 67.8
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 6.2e-205 718.0 516 69.2
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 1.0e-204 717.2 522 68.4
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 1.2e-203 713.8 511 68.9
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 5.8e-203 711.4 504 69.4
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 7.5e-203 711.1 513 68.8
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 1.9e-201 706.4 513 68.2
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 3.2e-201 705.7 509 69.2
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 7.0e-201 704.5 518 67.6
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 6.0e-200 701.4 510 67.8
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 6.0e-200 701.4 520 67.7
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 7.8e-200 701.0 509 68.2
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 2.3e-199 699.5 514 67.3
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 3.0e-199 699.1 520 66.9
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.0e-199 699.1 521 66.6
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 1.9e-198 696.4 524 67.2
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 9.5e-198 694.1 523 66.0
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 1.4e-196 690.3 537 64.6
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.8e-196 689.9 542 64.0
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 6.8e-196 688.0 513 66.1
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 1.2e-195 687.2 586 60.2
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 1.5e-195 686.8 513 66.1
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 2.7e-192 676.0 494 68.4
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 5.1e-191 671.8 493 69.2
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 9.5e-190 667.5 527 63.8
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 5.2e-188 661.8 526 63.5
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 1.2e-187 660.6 470 70.2
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 9.9e-187 657.5 469 69.7
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 8.4e-186 654.4 508 65.7
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 1.7e-178 630.2 514 62.6
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 7.8e-176 621.3 440 70.0
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 1.1e-174 617.5 520 62.9
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 5.6e-174 615.1 543 57.6
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.6e-173 613.6 518 62.5
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 2.8e-173 612.8 516 61.2
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.8e-173 612.8 528 61.6
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.4e-172 610.5 505 62.6
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.6e-171 606.3 535 60.9
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 3.4e-171 605.9 516 58.5
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 8.4e-170 601.3 423 71.4
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 3.5e-168 595.9 525 58.7
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 6.0e-168 595.1 476 69.7
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 6.7e-167 591.7 503 59.6
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 3.3e-166 589.3 427 67.9
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 4.8e-165 585.5 451 65.0
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 4.0e-164 582.4 478 68.4
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 7.6e-163 578.2 415 70.8
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 6.4e-162 575.1 520 60.0
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 8.4e-162 574.7 420 68.8
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 1.1e-161 574.3 423 68.8
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 1.9e-161 573.5 460 64.3
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 1.0e-159 567.8 524 57.3
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.0e-159 567.8 423 66.7
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 2.3e-159 566.6 419 68.3
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 3.0e-159 566.2 505 58.8
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.2e-153 545.8 558 54.8
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 1.1e-150 537.7 446 62.1
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.9e-150 537.0 399 69.9
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 6.3e-149 531.9 424 65.1
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 7.2e-145 518.5 559 51.7
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 9.3e-145 518.1 586 51.2
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 1.2e-144 517.7 523 52.8
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.1e-140 504.6 500 53.6
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 5.3e-140 502.3 443 57.6
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.5e-139 500.7 456 59.4
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 6.1e-136 488.8 389 66.1
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 3.9e-135 486.1 464 54.7
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.1e-129 468.0 422 59.7
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 2.0e-126 457.2 376 62.5
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 2.2e-117 427.2 478 49.0
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 4.8e-117 426.0 518 46.3
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 6.3e-117 425.6 252 86.1
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 6.5e-114 415.6 297 69.0
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 4.2e-113 412.9 297 67.3
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 3.0e-111 406.8 393 55.0
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 1.6e-104 384.4 511 43.2
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 6.1e-104 382.5 341 58.9
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 2.9e-93 347.1 457 43.3
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 7.0e-92 342.4 323 57.9
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 1.2e-86 325.1 430 47.4
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 7.3e-81 305.8 230 67.0
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 4.4e-78 296.6 373 46.6
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 7.8e-75 285.8 214 64.0
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.5e-73 281.6 462 40.0
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 6.2e-72 276.2 167 82.0
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.0e-66 258.8 188 65.4
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 2.3e-66 257.7 194 69.1
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 5.1e-66 256.5 430 38.4
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 1.5e-62 245.0 217 59.9
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 2.9e-53 214.2 595 29.2
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 4.9e-53 213.4 198 57.1
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 5.5e-44 183.3 187 52.4
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 7.4e-41 172.9 436 31.9
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 9.0e-39 166.0 161 57.1
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 9.3e-36 156.0 160 53.1
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 3.9e-34 150.6 97 76.3
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 4.8e-32 143.7 148 49.3
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.2e-30 139.0 122 53.3
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 7.2e-28 129.8 149 43.6
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 7.2e-28 129.8 149 43.6
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.6e-27 128.6 86 70.9
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 1.5e-25 122.1 572 25.5
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 5.7e-25 120.2 93 63.4
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 7.4e-25 119.8 106 58.5
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 1.3e-24 119.0 94 58.5
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 2.0e-22 111.7 94 55.3
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 5.0e-21 107.1 78 56.4
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 1.6e-19 102.1 89 65.2
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 3.0e-18 97.8 73 64.4
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.5e-17 95.5 67 71.6
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 7.4e-17 93.2 62 74.2
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 7.4e-17 93.2 62 74.2
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 1.8e-15 88.6 56 78.6
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 3.5e-14 84.3 61 63.9
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 7.7e-14 83.2 100 42.0
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 3.8e-13 80.9 80 57.5
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.9e-12 78.6 62 62.9
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.6e-11 75.5 50 72.0
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.7e-08 65.5 48 60.4
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 7.7e-06 56.6 182 28.6


User provided reference genes

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