Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G07160 Arabidopsis thaliana HOM05D011591 ORTHO05D010376 1.3e-76 289.7 151 100.0
AL6G17350 Arabidopsis lyrata HOM05D011591 ORTHO05D010376 1.8e-65 252.7 151 88.1
Thhalv10014931m.g Eutrema salsugineum HOM05D011591 ORTHO05D010376 3.9e-44 181.8 142 68.3
Sp6g35750 Schrenkiella parvula HOM05D011591 ORTHO05D010376 1.3e-42 176.8 143 65.7
Carub.0006s0608 Capsella rubella HOM05D011591 ORTHO05D010376 1.6e-42 176.4 180 56.7
A10p28930 Brassica napus HOM05D011591 ORTHO05D010376 7.6e-40 167.5 143 62.9
BraA10t44940Z Brassica rapa HOM05D011591 ORTHO05D010376 7.6e-40 167.5 143 62.9
C09p69280 Brassica napus HOM05D011591 ORTHO05D010376 1.0e-39 167.2 143 62.9
BolC9t59672H Brassica oleracea HOM05D011591 ORTHO05D010376 1.0e-39 167.2 143 62.9
BcaC06g32470 Brassica carinata HOM05D011591 ORTHO05D010376 6.9e-25 117.9 94 68.1
THA.LOC104810699 Tarenaya hassleriana HOM05D011591 ORTHO05D010376 1.5e-24 116.7 139 48.2
Manes.18G136300 Manihot esculenta HOM05D011591 ORTHO05D010376 3.5e-16 89.0 116 44.0
Haze_24379 Corylus avellana HOM05D028161 ORTHO05D010376 9.4e-14 80.9 100 44.0
Cfa011740 Carpinus fangiana HOM05D028161 ORTHO05D010376 2.1e-13 79.7 114 39.5
Sabra09G0056900 Salix brachista HOM05D011591 ORTHO05D010376 4.7e-13 78.6 107 42.1
Thecc.09G353600 Theobroma cacao HOM05D020455 ORTHO05D010376 1.4e-12 77.0 111 39.6
QL01p039514 Quercus lobata HOM05D011591 ORTHO05D010376 2.3e-12 76.3 135 36.3
Sed0000970 Sechium edule HOM05D011591 ORTHO05D010376 6.7e-12 74.7 106 40.6
FAN21G0777 Fragaria x ananassa HOM05D002172 ORTHO05D010376 8.8e-12 74.3 105 42.9
FvH4_3g39200 Fragaria vesca HOM05D040535 ORTHO05D010376 1.2e-11 73.9 105 42.9
FAN11G1101 Fragaria x ananassa HOM05D008445 ORTHO05D010376 1.2e-11 73.9 105 42.9
Potri.009G075000 Populus trichocarpa HOM05D020455 ORTHO05D010376 2.0e-11 73.2 135 35.6
MELO3C020524.2 Cucumis melo HOM05D039867 ORTHO05D010376 9.7e-11 70.9 100 40.0
Hma1.2p1_1974F.1_g309630 Hydrangea macrophylla HOM05D010709 ORTHO05D010376 3.7e-10 68.9 114 42.1
Manes.03G103800 Manihot esculenta HOM05D002172 ORTHO05D002167 8.2e-10 67.8 100 44.0
CDE02G3937 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 1.8e-09 66.6 99 41.4
CDE03G0342 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 4.1e-09 65.5 99 41.4
Actinidia32624 Actinidia chinensis HOM05D010709 ORTHO05D010376 9.1e-09 64.3 128 35.9
Ah.01g003880 Amaranthus hybridus HOM05D002172 ORTHO05D002167 1.6e-08 63.5 99 40.4
Rhsim13G0066500 Rhododendron simsii HOM05D010709 ORTHO05D010376 2.0e-08 63.2 130 32.3
AUR62038993 Chenopodium quinoa HOM05D002172 ORTHO05D002167 2.7e-08 62.8 96 41.7
SHI19189 Sapria himalayana HOM05D011591 ORTHO05D010376 3.5e-08 62.4 103 41.7
Zm00001eb370720 Zea mays HOM05D002172 ORTHO05D002167 3.5e-08 62.4 93 41.9
CSS0041982 Camellia sinensis var. sinensis HOM05D010709 ORTHO05D010376 4.5e-08 62.0 94 35.1
CDE04G2153 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 4.5e-08 62.0 121 33.9
Lj3g0018486 Lotus japonicus HOM05D002172 ORTHO05D002167 4.5e-08 62.0 124 34.7
HPP92_020291 Vanilla planifolia HOM05D002172 ORTHO05D002167 4.5e-08 62.0 96 40.6
BcaC02g12484 Brassica carinata HOM05D002172 ORTHO05D002167 7.7e-08 61.2 93 41.9
A05p02920 Brassica napus HOM05D002172 ORTHO05D002167 7.7e-08 61.2 93 41.9
C04p03550 Brassica napus HOM05D002172 ORTHO05D002167 7.7e-08 61.2 93 41.9
Lalb_Chr03g0030941 Lupinus albus HOM05D002172 ORTHO05D002167 7.7e-08 61.2 92 42.4
TWI14G1374 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 7.7e-08 61.2 97 41.2
TWI23G0692 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 7.7e-08 61.2 124 36.3
TAR624G0475 Trochodendron aralioides HOM05D002172 ORTHO05D002167 7.7e-08 61.2 97 39.2
TAR624G0577 Trochodendron aralioides HOM05D002172 ORTHO05D002167 7.7e-08 61.2 97 39.2
Zm00001eb152810 Zea mays HOM05D002172 ORTHO05D002167 7.7e-08 61.2 93 41.9
Dinv14958 Davidia involucrata HOM05D002172 ORTHO05D002167 1.0e-07 60.8 97 40.2
HanXRQChr13g0391241 Helianthus annuus HOM05D002172 ORTHO05D002167 1.0e-07 60.8 93 40.9
Mapoly0019s0040 Marchantia polymorpha HOM05D001917 ORTHO05D002167 1.0e-07 60.8 102 37.3
PGR142G3291 Punica granatum HOM05D002172 ORTHO05D002167 1.0e-07 60.8 93 41.9
EL10Ac9g20854 Beta vulgaris HOM05D002172 ORTHO05D002167 1.3e-07 60.5 93 41.9
HanXRQChr03g0071001 Helianthus annuus HOM05D002172 ORTHO05D002167 1.3e-07 60.5 93 40.9
Dinv19980 Davidia involucrata HOM05D002172 ORTHO05D002167 1.7e-07 60.1 97 40.2
HPP92_005197 Vanilla planifolia HOM05D002172 ORTHO05D002167 1.7e-07 60.1 93 41.9
CSS0009595 Camellia sinensis var. sinensis HOM05D002172 ORTHO05D002167 2.2e-07 59.7 93 40.9
FvH4_2g14020 Fragaria vesca HOM05D000516 ORTHO05D000409 2.2e-07 59.7 103 35.9
FAN20G0383 Fragaria x ananassa HOM05D000516 ORTHO05D000409 2.2e-07 59.7 103 35.9
FAN24G1549 Fragaria x ananassa HOM05D000516 ORTHO05D000409 2.2e-07 59.7 103 35.9
Os01g0756200 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 2.2e-07 59.7 93 40.9
PGSC0003DMG401007810 Solanum tuberosum HOM05D002172 ORTHO05D002167 2.2e-07 59.7 105 36.2
Zm00001eb238570 Zea mays HOM05D002172 ORTHO05D002167 2.2e-07 59.7 93 41.9
Aa31LG7G15250 Aethionema arabicum HOM05D000516 ORTHO05D000409 2.9e-07 59.3 94 34.0
BcaC07g40326 Brassica carinata HOM05D002172 ORTHO05D002167 2.9e-07 59.3 93 39.8
C08p33640 Brassica napus HOM05D002172 ORTHO05D002167 2.9e-07 59.3 93 39.8
BolC8t50961H Brassica oleracea HOM05D002172 ORTHO05D002167 2.9e-07 59.3 93 39.8
CAN.G318.5 Capsicum annuum HOM05D002172 ORTHO05D002167 2.9e-07 59.3 93 39.8
Peaxi162Scf00384g00069 Petunia axillaris HOM05D002172 ORTHO05D002167 2.9e-07 59.3 94 39.4
Solyc12g010800.2 Solanum lycopersicum HOM05D002172 ORTHO05D002167 2.9e-07 59.3 93 39.8
Sopen12g006170 Solanum pennellii HOM05D002172 ORTHO05D002167 2.9e-07 59.3 93 39.8
Pp3c24_10470 Physcomitrium patens HOM05D002172 ORTHO05D002167 3.8e-07 58.9 135 30.4
Psat5g275000 Pisum sativum HOM05D002172 ORTHO05D002167 5.0e-07 58.5 86 40.7
vmacro11903 Vaccinium macrocarpon HOM05D002172 ORTHO05D002167 5.0e-07 58.5 92 41.3
Cc01_g14580 Coffea canephora HOM05D010709 ORTHO05D010376 6.5e-07 58.2 97 39.2
ECA240G3701 Erigeron canadensis HOM05D002172 ORTHO05D002167 6.5e-07 58.2 140 32.9
FAN27G2291 Fragaria x ananassa HOM05D000516 ORTHO05D000409 6.5e-07 58.2 103 35.0
Peaxi162Scf00739g00324 Petunia axillaris HOM05D000516 ORTHO05D000409 6.5e-07 58.2 102 35.3
PGSC0003DMG400016651 Solanum tuberosum HOM05D000516 ORTHO05D000409 6.5e-07 58.2 102 35.3
MSTRG.8376 Avicennia marina HOM05D000516 ORTHO05D000409 8.5e-07 57.8 103 34.0
C08p02700 Brassica napus HOM05D000516 ORTHO05D000409 8.5e-07 57.8 100 34.0
Gorai.012G014500 Gossypium raimondii HOM05D000516 ORTHO05D000409 8.5e-07 57.8 105 36.2
HanXRQChr08g0221531 Helianthus annuus HOM05D000516 ORTHO05D000409 8.5e-07 57.8 95 36.8
Pp3c6_7520 Physcomitrium patens HOM05D002172 ORTHO05D002167 8.5e-07 57.8 97 36.1
Hund13487 Selenicereus undatus HOM05D000516 ORTHO05D000409 8.5e-07 57.8 93 36.6
Sc12g0003320 Simmondsia chinensis HOM05D002172 ORTHO05D002167 8.5e-07 57.8 93 39.8
Sopen07g027590 Solanum pennellii HOM05D000516 ORTHO05D000409 8.5e-07 57.8 102 35.3
COL.COLO4_08326 Corchorus olitorius HOM05D000516 ORTHO05D000409 1.1e-06 57.4 105 35.2
unitig_37.g12563 Utricularia gibba HOM05D002172 ORTHO05D002167 1.1e-06 57.4 111 36.0
Aqoxy4G02716 Aquilegia oxysepala HOM05D002172 ORTHO05D002167 1.5e-06 57.0 90 36.7
CDE04G3323 Ceratophyllum demersum HOM05D000516 ORTHO05D000409 1.5e-06 57.0 101 33.7
Gohir.A10G179600 Gossypium hirsutum HOM05D000516 ORTHO05D000409 1.5e-06 57.0 105 35.2
Gohir.D04G012200 Gossypium hirsutum HOM05D000516 ORTHO05D000409 1.5e-06 57.0 105 36.2
Gohir.D10G186300 Gossypium hirsutum HOM05D000516 ORTHO05D000409 1.5e-06 57.0 105 35.2
Gorai.009G293600 Gossypium raimondii HOM05D000516 ORTHO05D000409 1.5e-06 57.0 105 34.3
Gorai.011G209200 Gossypium raimondii HOM05D000516 ORTHO05D000409 1.5e-06 57.0 105 35.2
Manes.10G001100 Manihot esculenta HOM05D000516 ORTHO05D000409 1.5e-06 57.0 95 37.9
Pp3c19_15700 Physcomitrium patens HOM05D000516 ORTHO05D000409 1.5e-06 57.0 101 33.7
Pp3c19_15710 Physcomitrium patens HOM05D000516 ORTHO05D000409 1.5e-06 57.0 101 33.7
Pp3c5_20330 Physcomitrium patens HOM05D002172 ORTHO05D002167 1.5e-06 57.0 97 36.1
CiPaw.01G306300 Carya illinoinensis HOM05D000516 ORTHO05D000409 1.9e-06 56.6 95 35.8
Duzib052G0784 Durio zibethinus HOM05D000516 ORTHO05D000409 1.9e-06 56.6 94 35.1
Gohir.D05G108050 Gossypium hirsutum HOM05D020455 ORTHO05D010376 1.9e-06 56.6 104 35.6
Gorai.009G112200 Gossypium raimondii HOM05D020455 ORTHO05D010376 1.9e-06 56.6 104 35.6
Hma1.2p1_0119F.1_g056940 Hydrangea macrophylla HOM05D000516 ORTHO05D000409 1.9e-06 56.6 95 36.8
Os01g0211800 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 1.9e-06 56.6 86 41.9
TAR627G0822 Trochodendron aralioides HOM05D002172 ORTHO05D002167 1.9e-06 56.6 90 37.8
Aqoxy6G02330 Aquilegia oxysepala HOM05D000516 ORTHO05D000409 2.5e-06 56.2 101 33.7
Ca_18901_v3 Cicer arietinum L. HOM05D002172 ORTHO05D002167 2.5e-06 56.2 82 41.5
Duzib106G0885 Durio zibethinus HOM05D000516 ORTHO05D000409 2.5e-06 56.2 95 36.8
Eucgr.I01335 Eucalyptus grandis HOM05D000516 ORTHO05D000409 2.5e-06 56.2 102 33.3
Gohir.D05G280100 Gossypium hirsutum HOM05D000516 ORTHO05D000409 2.5e-06 56.2 105 34.3
Hma1.2p1_0416F.1_g148590 Hydrangea macrophylla HOM05D002172 ORTHO05D002167 2.5e-06 56.2 97 38.1
Mapoly0046s0102 Marchantia polymorpha HOM05D000516 ORTHO05D000409 2.5e-06 56.2 142 29.6
Pp3c2_26970 Physcomitrium patens HOM05D002172 ORTHO05D002167 2.5e-06 56.2 127 29.9
Rhsim03G0151900 Rhododendron simsii HOM05D000516 ORTHO05D000409 2.5e-06 56.2 93 36.6
Thecc.10G181700 Theobroma cacao HOM05D000516 ORTHO05D000409 2.5e-06 56.2 95 36.8
vmacro06889 Vaccinium macrocarpon HOM05D000516 ORTHO05D000409 2.5e-06 56.2 93 36.6
MELO3C008356.2 Cucumis melo HOM05D000516 ORTHO05D000409 3.2e-06 55.8 99 34.3
CsaV3_6G005320 Cucumis sativus L. HOM05D000516 ORTHO05D000409 3.2e-06 55.8 99 34.3
Gohir.A05G403400 Gossypium hirsutum HOM05D000516 ORTHO05D000409 3.2e-06 55.8 105 35.2
Hma1.2p1_2182F.1_g316305 Hydrangea macrophylla HOM05D000516 ORTHO05D000409 3.2e-06 55.8 93 36.6
Pp3c22_13770 Physcomitrium patens HOM05D000516 ORTHO05D000409 3.2e-06 55.8 101 32.7
TWI73G1270 Tripterygium wilfordii HOM05D000516 ORTHO05D000409 3.2e-06 55.8 112 33.9
unitig_60.g25664 Utricularia gibba HOM05D000516 ORTHO05D000409 3.2e-06 55.8 95 36.8
A08p35870 Brassica napus HOM05D000516 ORTHO05D000409 4.2e-06 55.5 100 33.0
BolC8t47066H Brassica oleracea HOM05D000516 ORTHO05D000409 4.2e-06 55.5 100 33.0
BraA08t35494Z Brassica rapa HOM05D000516 ORTHO05D000409 4.2e-06 55.5 100 33.0
Dinv34479 Davidia involucrata HOM05D000516 ORTHO05D000409 4.2e-06 55.5 95 35.8
Gohir.A05G107850 Gossypium hirsutum HOM05D020455 ORTHO05D010376 4.2e-06 55.5 93 38.7
Gohir.A05G278400 Gossypium hirsutum HOM05D000516 ORTHO05D000409 4.2e-06 55.5 95 36.8
Gorai.005G111000 Gossypium raimondii HOM05D000516 ORTHO05D000409 4.2e-06 55.5 102 32.4
MD17G1233900 Malus domestica HOM05D002172 ORTHO05D002167 4.2e-06 55.5 93 38.7
Manes.13G139500 Manihot esculenta HOM05D002172 ORTHO05D002167 4.2e-06 55.5 104 38.5
Nitab4.5_0001870g0010 Nicotiana tabacum HOM05D000516 ORTHO05D000409 4.2e-06 55.5 102 35.3
Prupe.8G026300 Prunus persica HOM05D000516 ORTHO05D000409 4.2e-06 55.5 103 34.0
Rhsim06G0204100 Rhododendron simsii HOM05D002172 ORTHO05D002167 4.2e-06 55.5 80 42.5
TWI36G1594 Tripterygium wilfordii HOM05D000516 ORTHO05D000409 4.2e-06 55.5 100 31.0
arahy.Tifrunner.gnm1.ann1.EA8GWL Arachis hypogaea HOM05D020455 ORTHO05D010376 5.5e-06 55.1 97 35.1
BcaC02g08809 Brassica carinata HOM05D000516 ORTHO05D000409 5.5e-06 55.1 101 33.7
A04p15960 Brassica napus HOM05D000516 ORTHO05D000409 5.5e-06 55.1 101 33.7
CDE12G0509 Ceratophyllum demersum HOM05D000516 ORTHO05D000409 5.5e-06 55.1 103 32.0
Ca_14980_v3 Cicer arietinum L. HOM05D016525 ORTHO05D010376 5.5e-06 55.1 126 30.2
MELO3C020145.2 Cucumis melo HOM05D000516 ORTHO05D000409 5.5e-06 55.1 112 33.0
CsaV3_5G010910 Cucumis sativus L. HOM05D000516 ORTHO05D000409 5.5e-06 55.1 112 33.0
DCAR_022792 Daucus carota HOM05D000516 ORTHO05D000409 5.5e-06 55.1 102 31.4
Thhalv10016923m.g Eutrema salsugineum HOM05D002172 ORTHO05D002167 5.5e-06 55.1 93 37.6
Gohir.A03G077700 Gossypium hirsutum HOM05D000516 ORTHO05D000409 5.5e-06 55.1 102 32.4
Gohir.D02G097400 Gossypium hirsutum HOM05D000516 ORTHO05D000409 5.5e-06 55.1 102 32.4
Lj8A152T85 Lonicera japonica HOM05D002172 ORTHO05D002167 5.5e-06 55.1 115 34.8
Pp3c19_15730 Physcomitrium patens HOM05D000516 ORTHO05D000409 5.5e-06 55.1 101 32.7
QL02p024154 Quercus lobata HOM05D000516 ORTHO05D000409 5.5e-06 55.1 93 34.4
TWI74G1424 Tripterygium wilfordii HOM05D002172 ORTHO05D010376 5.5e-06 55.1 107 29.0
Actinidia10984 Actinidia chinensis HOM05D002172 ORTHO05D002167 7.2e-06 54.7 102 35.3
CSS0033974 Camellia sinensis var. sinensis HOM05D010709 ORTHO05D010376 7.2e-06 54.7 96 34.4
Cpa.g.sc81.160 Carica papaya HOM05D000516 ORTHO05D000409 7.2e-06 54.7 108 34.3
Cc02_g05410 Coffea canephora HOM05D000516 ORTHO05D000409 7.2e-06 54.7 102 33.3
Gohir.A02G064500 Gossypium hirsutum HOM05D000516 ORTHO05D000409 7.2e-06 54.7 100 32.0
Gohir.D02G070600 Gossypium hirsutum HOM05D000516 ORTHO05D000409 7.2e-06 54.7 100 32.0
MD01G1167000 Malus domestica HOM05D000516 ORTHO05D000409 7.2e-06 54.7 95 34.7
MD07G1233200 Malus domestica HOM05D000516 ORTHO05D000409 7.2e-06 54.7 95 34.7
Manes.05G151400 Manihot esculenta HOM05D000516 ORTHO05D000409 7.2e-06 54.7 99 30.3
Mapoly0007s0056 Marchantia polymorpha HOM05D000516 ORTHO05D000409 7.2e-06 54.7 103 32.0
Nn2g10316 Nelumbo nucifera HOM05D000516 ORTHO05D000409 7.2e-06 54.7 95 35.8
Oeu035037.1 Olea europaea HOM05D000516 ORTHO05D000409 7.2e-06 54.7 100 34.0
Sp4g00420 Schrenkiella parvula HOM05D000516 ORTHO05D014977 7.2e-06 54.7 116 31.0
arahy.Tifrunner.gnm1.ann1.NC1Z37 Arachis hypogaea HOM05D000516 ORTHO05D010376 9.4e-06 54.3 74 40.5
CiPaw.06G127400 Carya illinoinensis HOM05D000516 ORTHO05D000409 9.4e-06 54.3 100 34.0
Ca_04024_v3 Cicer arietinum L. HOM05D002172 ORTHO05D002167 9.4e-06 54.3 85 37.6
Haze_17353 Corylus avellana HOM05D000516 ORTHO05D000409 9.4e-06 54.3 95 34.7
Duzib093G0443 Durio zibethinus HOM05D000516 ORTHO05D000409 9.4e-06 54.3 100 32.0
ECA232G1008 Erigeron canadensis HOM05D000516 ORTHO05D000409 9.4e-06 54.3 95 34.7
ECA238G1336 Erigeron canadensis HOM05D000516 ORTHO05D000409 9.4e-06 54.3 95 34.7
FAN03G0936 Fragaria x ananassa HOM05D000516 ORTHO05D000409 9.4e-06 54.3 95 34.7
HanXRQChr09g0261991 Helianthus annuus HOM05D000516 ORTHO05D000409 9.4e-06 54.3 95 34.7
Lsat_1_v5_gn_9_59881 Lactuca sativa HOM05D000516 ORTHO05D000409 9.4e-06 54.3 95 34.7
Pp3c22_13810 Physcomitrium patens HOM05D000516 ORTHO05D000409 9.4e-06 54.3 101 33.7
Psat2g051040 Pisum sativum HOM05D000516 ORTHO05D000409 9.4e-06 54.3 93 35.5
Prupe.2G263700 Prunus persica HOM05D000516 ORTHO05D000409 9.4e-06 54.3 95 34.7
Sed0024431 Sechium edule HOM05D000516 ORTHO05D000409 9.4e-06 54.3 112 32.1
SGA_v2.0_scaffold44G16619 Striga asiatica HOM05D000516 ORTHO05D000409 9.4e-06 54.3 103 33.0
THA.LOC104813190 Tarenaya hassleriana HOM05D000516 ORTHO05D000409 9.4e-06 54.3 95 33.7
TWI53G1259 Tripterygium wilfordii HOM05D000516 ORTHO05D000409 9.4e-06 54.3 95 35.8


User provided reference genes

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