Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 9.6e-114 413.7 236 100.0
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 1.1e-106 390.2 236 94.9
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 1.8e-99 366.3 247 86.2
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 2.5e-98 362.5 237 86.9
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 2.4e-96 355.9 236 82.6
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 5.8e-95 351.3 237 82.7
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 5.5e-93 344.7 236 82.2
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 7.9e-92 340.9 236 80.9
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 1.0e-91 340.5 236 80.1
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 1.8e-91 339.7 236 79.7
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 1.8e-91 339.7 236 79.7
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 2.3e-91 339.3 236 79.7
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 8.7e-91 337.4 236 79.2
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 1.1e-88 330.5 249 76.3
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 1.0e-86 323.9 243 75.7
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 1.7e-86 323.2 200 85.5
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 1.7e-86 323.2 200 85.5
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 1.7e-86 323.2 200 85.5
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 1.3e-78 297.0 236 71.2
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 8.2e-65 251.1 233 61.8
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 1.5e-63 246.9 236 61.9
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 1.5e-63 246.9 236 61.9
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 2.0e-63 246.5 196 66.3
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 2.0e-63 246.5 184 70.7
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 3.5e-63 245.7 200 63.5
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 7.7e-63 244.6 236 61.0
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 7.7e-63 244.6 161 78.3
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 2.2e-62 243.0 230 62.2
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 2.9e-62 242.7 234 58.1
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 2.9e-62 242.7 171 73.7
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 5.0e-62 241.9 161 78.3
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 6.5e-62 241.5 165 73.9
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 8.5e-62 241.1 166 73.5
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 8.5e-62 241.1 161 78.3
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 1.5e-61 240.4 198 67.7
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 2.5e-61 239.6 197 68.0
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 3.2e-61 239.2 187 69.0
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 3.2e-61 239.2 172 73.3
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 5.5e-61 238.4 165 73.3
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 1.2e-60 237.3 158 77.2
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 1.6e-60 236.9 200 65.0
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 3.6e-60 235.7 200 64.5
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 6.1e-60 235.0 233 57.9
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 1.0e-59 234.2 205 64.4
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.0e-59 234.2 236 56.8
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 1.4e-59 233.8 192 65.6
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 1.8e-59 233.4 187 65.8
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 1.8e-59 233.4 229 59.8
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 2.3e-59 233.0 164 73.8
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 3.0e-59 232.6 156 78.2
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 5.2e-59 231.9 192 65.6
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 5.2e-59 231.9 187 63.6
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 6.7e-59 231.5 201 63.7
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 6.7e-59 231.5 201 64.7
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 8.8e-59 231.1 188 64.9
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 8.8e-59 231.1 177 69.5
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 8.8e-59 231.1 162 73.5
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 2.0e-58 229.9 188 64.4
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 2.6e-58 229.6 163 72.4
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 7.5e-58 228.0 184 67.9
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 1.7e-57 226.9 189 65.6
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 2.2e-57 226.5 187 67.9
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 2.2e-57 226.5 181 67.4
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 2.2e-57 226.5 164 73.8
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 2.8e-57 226.1 205 62.4
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 2.8e-57 226.1 166 72.3
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 6.3e-57 224.9 190 61.1
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 8.2e-57 224.6 197 63.5
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 1.1e-56 224.2 190 61.1
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 1.1e-56 224.2 200 61.5
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 1.8e-56 223.4 184 65.8
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 4.1e-56 222.2 193 64.2
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 4.1e-56 222.2 201 60.2
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 7.0e-56 221.5 171 70.2
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 9.1e-56 221.1 163 70.6
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 1.6e-55 220.3 197 62.4
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 2.6e-55 219.5 164 69.5
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 2.6e-55 219.5 204 60.8
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 2.6e-55 219.5 181 64.6
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 3.5e-55 219.2 174 68.4
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 4.5e-55 218.8 185 62.7
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 5.9e-55 218.4 173 69.9
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 7.7e-55 218.0 201 60.2
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 5.0e-54 215.3 204 58.8
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 6.5e-54 214.9 170 68.8
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 8.5e-54 214.5 136 81.6
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 8.5e-54 214.5 166 71.1
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 1.1e-53 214.2 168 68.5
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 1.5e-53 213.8 160 70.6
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 1.5e-53 213.8 189 60.3
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 4.2e-53 212.2 203 60.6
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 4.2e-53 212.2 196 60.7
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 4.7e-52 208.8 190 58.9
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 1.4e-51 207.2 203 60.1
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 3.0e-51 206.1 166 65.7
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 5.7e-50 201.8 173 67.1
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 6.3e-49 198.4 193 59.1
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 6.3e-49 198.4 234 53.0
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 1.8e-48 196.8 203 57.6
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 3.5e-47 192.6 145 69.0
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 5.9e-47 191.8 159 64.8
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 1.3e-46 190.7 133 80.5
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 1.7e-46 190.3 234 49.1
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 3.8e-46 189.1 138 71.0
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 1.5e-45 187.2 199 54.3
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 1.9e-45 186.8 128 74.2
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 7.2e-45 184.9 150 66.7
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 9.4e-45 184.5 175 61.7
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 1.0e-43 181.0 159 59.1
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 2.3e-43 179.9 163 57.1
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 5.2e-43 178.7 128 74.2
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 1.2e-42 177.6 199 55.8
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 3.4e-42 176.0 162 59.3
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 3.4e-42 176.0 118 77.1
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 3.7e-41 172.6 205 52.2
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 2.4e-40 169.9 101 84.2
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 9.1e-40 167.9 162 54.9
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 2.0e-39 166.8 181 53.0
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 2.3e-38 163.3 168 59.5
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 5.0e-38 162.2 238 42.4
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 1.2e-36 157.5 111 73.9
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 1.4e-27 127.5 105 64.8
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 1.2e-23 114.4 208 41.8
TAR628G0990 Trochodendron aralioides HOM05D005878 ORTHO05D007433 2.7e-23 113.2 138 51.4
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 5.2e-19 99.0 100 61.0
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 4.9e-17 92.4 118 44.9
C07p55210 Brassica napus HOM05D005878 ORTHO05D033170 8.3e-17 91.7 133 53.4
Atru.chr7.1915 Acer truncatum HOM05D005878 ORTHO05D007433 3.0e-14 83.2 106 50.9
Atru.chr3.2623 Acer truncatum HOM05D005878 ORTHO05D007433 6.6e-14 82.0 84 60.7
Potri.001G032200 Populus trichocarpa HOM05D005878 ORTHO05D007433 4.0e-11 72.8 233 31.3
BolC7t45992H Brassica oleracea HOM05D005878 ORTHO05D033170 5.2e-11 72.4 58 79.3
PGSC0003DMG400040390 Solanum tuberosum HOM05D005878 ORTHO05D007433 1.4e-08 64.3 59 55.9


User provided reference genes

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