Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.4e-100 369.0 210 100.0
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.2e-86 323.6 213 85.9
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.3e-77 293.5 217 82.9
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 7.8e-75 284.3 224 76.3
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.3e-74 283.5 214 75.7
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 6.2e-72 274.6 222 73.9
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 7.5e-70 267.7 215 77.2
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 1.3e-69 266.9 215 76.7
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 6.4e-69 264.6 190 78.9
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 3.0e-66 255.8 223 71.3
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 3.0e-66 255.8 223 71.3
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 3.9e-66 255.4 224 71.0
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.4e-44 183.0 211 55.5
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 5.8e-38 161.8 186 52.2
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.6e-35 153.7 181 51.9
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.0e-34 151.0 208 47.6
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.1e-33 147.5 208 47.1
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 3.3e-33 146.0 210 47.1
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 5.7e-33 145.2 208 45.2
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 2.8e-32 142.9 208 44.7
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.7e-32 142.5 210 44.8
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 3.7e-32 142.5 191 50.8
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 4.8e-32 142.1 185 48.1
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 8.2e-32 141.4 191 49.2
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.2e-32 141.4 191 49.2
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.2e-32 141.4 191 49.2
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 1.1e-31 141.0 189 48.1
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.1e-31 141.0 180 45.6
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.1e-31 141.0 203 46.3
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.4e-31 140.6 184 47.3
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.8e-31 140.2 207 44.4
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.8e-31 140.2 217 46.5
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 3.1e-31 139.4 182 45.1
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 3.1e-31 139.4 184 44.6
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 4.1e-31 139.0 184 47.8
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 9.0e-31 137.9 180 45.0
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 9.0e-31 137.9 184 47.3
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 9.0e-31 137.9 211 44.5
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.2e-30 137.5 211 44.5
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 1.2e-30 137.5 181 45.9
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.5e-30 137.1 206 42.7
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.6e-30 136.3 184 46.2
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.8e-30 135.2 217 45.2
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 7.6e-30 134.8 217 44.7
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.0e-29 134.4 184 45.7
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.0e-29 132.1 209 45.5
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 5.0e-29 132.1 184 45.1
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 6.5e-29 131.7 193 47.7
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.1e-28 131.0 199 42.7
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 1.9e-28 130.2 182 44.0
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.9e-28 130.2 192 43.8
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 5.5e-28 128.6 186 41.9
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.1e-28 128.3 209 45.0
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 9.3e-28 127.9 187 43.3
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 9.3e-28 127.9 182 44.0
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.2e-27 127.5 209 45.0
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 2.1e-27 126.7 191 46.6
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 4.6e-27 125.6 183 42.6
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.0e-26 124.4 189 43.9
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 1.3e-26 124.0 186 44.6
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.3e-26 124.0 165 46.1
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.8e-26 123.6 191 45.0
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.8e-26 123.6 183 41.5
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.9e-26 122.5 182 43.4
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 5.1e-26 122.1 184 44.0
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 6.7e-26 121.7 185 44.9
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 8.7e-26 121.3 188 45.7
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 8.7e-26 121.3 189 42.9
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 8.7e-26 121.3 210 42.9
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-25 120.9 188 44.7
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.1e-25 120.9 186 42.5
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.9e-25 120.2 184 42.9
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-25 120.2 210 42.9
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 1.9e-25 120.2 210 42.9
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.9e-25 120.2 186 41.9
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.9e-25 120.2 187 44.9
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.9e-25 120.2 186 44.1
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.9e-25 120.2 206 41.7
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 2.5e-25 119.8 186 45.2
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 2.5e-25 119.8 187 43.3
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 2.5e-25 119.8 183 42.6
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 3.3e-25 119.4 155 47.1
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 3.3e-25 119.4 183 43.2
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 4.3e-25 119.0 182 44.0
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 4.3e-25 119.0 177 48.0
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 7.4e-25 118.2 185 43.2
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 1.3e-24 117.5 183 40.4
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 2.2e-24 116.7 209 42.1
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 2.2e-24 116.7 209 42.1
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 3.7e-24 115.9 151 46.4
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.8e-24 115.5 160 47.5
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 6.3e-24 115.2 183 43.2
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 8.2e-24 114.8 209 40.7
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 8.2e-24 114.8 186 41.9
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.4e-23 114.0 185 42.7
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 3.1e-23 112.8 183 39.3
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 4.1e-23 112.5 184 42.4
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 4.1e-23 112.5 206 40.3
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 5.3e-23 112.1 209 39.7
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 6.9e-23 111.7 184 42.4
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 6.9e-23 111.7 184 42.4
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 9.0e-23 111.3 184 42.9
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 9.0e-23 111.3 183 43.7
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 9.0e-23 111.3 122 53.3
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.5e-22 110.5 186 39.8
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.6e-22 109.8 182 42.3
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 2.6e-22 109.8 184 41.8
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 3.4e-22 109.4 184 42.9
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.4e-22 109.4 184 41.8
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 4.5e-22 109.0 189 40.2
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 4.5e-22 109.0 186 41.9
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 7.7e-22 108.2 212 37.7
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 7.7e-22 108.2 183 42.1
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 7.7e-22 108.2 183 39.3
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.0e-21 107.8 190 41.6
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.0e-21 107.8 184 41.3
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.0e-21 107.8 184 38.6
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 1.3e-21 107.5 184 36.4
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 1.3e-21 107.5 183 42.1
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.3e-21 107.5 187 41.2
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.7e-21 107.1 182 41.8
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 2.2e-21 106.7 181 42.0
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 2.2e-21 106.7 211 39.3
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 6.5e-21 105.1 204 37.3
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 8.5e-21 104.8 197 37.1
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 1.1e-20 104.4 182 42.3
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.9e-20 103.6 184 41.3
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 2.5e-20 103.2 188 38.8
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 3.2e-20 102.8 199 37.7
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 7.2e-20 101.7 194 38.7
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 9.4e-20 101.3 115 50.4
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 9.4e-20 101.3 196 35.7
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 9.4e-20 101.3 180 38.3
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.1e-19 100.1 184 39.7
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.1e-19 100.1 189 39.2
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 2.1e-19 100.1 190 38.4
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 3.6e-19 99.4 183 37.7
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 4.6e-19 99.0 183 42.6
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 4.6e-19 99.0 197 38.6
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 1.0e-18 97.8 192 37.5
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 1.4e-18 97.4 184 39.7
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 1.8e-18 97.1 130 46.2
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 2.3e-18 96.7 212 37.3
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 3.9e-18 95.9 192 40.1
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 6.7e-18 95.1 191 39.3
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 6.7e-18 95.1 194 41.2
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.1e-17 94.4 184 37.0
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 3.3e-17 92.8 196 36.7
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 7.4e-17 91.7 193 38.3
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 6.3e-16 88.6 194 34.5
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 4.1e-15 85.9 208 35.1
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 5.3e-15 85.5 172 36.0
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.2e-14 84.3 183 40.4
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.2e-14 84.3 183 40.4
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.2e-14 84.3 117 45.3
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 2.0e-14 83.6 184 36.4
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.6e-14 83.2 165 35.2
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 5.9e-14 82.0 141 41.8
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-13 80.9 184 33.7
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 2.2e-13 80.1 136 41.2
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 8.5e-13 78.2 130 43.1
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.1e-12 77.8 183 34.4
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 2.5e-12 76.6 208 33.2
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.2e-12 76.3 189 33.9
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 7.2e-12 75.1 208 32.7
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 9.4e-12 74.7 184 33.2
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 1.2e-11 74.3 135 38.5
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 1.6e-11 73.9 208 30.8
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 2.1e-11 73.6 216 32.9
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 1.4e-10 70.9 208 30.3
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.8e-10 70.5 165 30.9
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 2.3e-10 70.1 186 36.6
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.3e-10 70.1 283 29.7
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 3.0e-10 69.7 164 29.9
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.1e-10 68.9 183 32.2
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 6.7e-10 68.6 167 35.3
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.8e-08 63.2 183 33.9
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 4.8e-08 62.4 79 53.2
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.9e-06 55.5 75 42.7


User provided reference genes

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