Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G06590 Arabidopsis thaliana HOM05D007071 ORTHO05D008677 1.3e-174 616.3 315 100.0
AL6G16680 Arabidopsis lyrata HOM05D007071 ORTHO05D008677 1.1e-162 576.6 316 94.3
CARHR206610 Cardamine hirsuta HOM05D007071 ORTHO05D008677 1.3e-145 520.0 318 83.3
Carub.0006s0547 Capsella rubella HOM05D007071 ORTHO05D008677 3.4e-143 511.9 315 84.4
Thhalv10014151m.g Eutrema salsugineum HOM05D007071 ORTHO05D008677 3.8e-142 508.4 315 82.5
Sp6g36270 Schrenkiella parvula HOM05D007071 ORTHO05D008677 5.7e-138 494.6 327 80.1
Aa31sc291G40 Aethionema arabicum HOM05D007071 ORTHO05D008677 4.5e-127 458.4 318 76.1
C09p70180 Brassica napus HOM05D007071 ORTHO05D008677 1.5e-122 443.4 321 73.5
BolC9t59762H Brassica oleracea HOM05D007071 ORTHO05D008677 3.4e-122 442.2 321 73.5
A10p29800 Brassica napus HOM05D007071 ORTHO05D008677 3.7e-121 438.7 321 72.6
BraA10t45019Z Brassica rapa HOM05D007071 ORTHO05D008677 2.7e-119 432.6 321 72.0
Thhalv10014358m.g Eutrema salsugineum HOM05D007071 ORTHO05D008677 4.4e-114 415.2 315 71.4
THA.LOC104809942 Tarenaya hassleriana HOM05D007071 ORTHO05D008677 1.5e-101 373.6 317 62.8
Gorai.006G146400 Gossypium raimondii HOM05D007071 ORTHO05D008677 3.3e-77 292.7 318 51.6
Gohir.A09G131600 Gossypium hirsutum HOM05D007071 ORTHO05D008677 5.6e-77 292.0 318 52.5
Potri.016G064200 Populus trichocarpa HOM05D007071 ORTHO05D008677 2.1e-76 290.0 320 51.2
Gohir.D09G127800 Gossypium hirsutum HOM05D007071 ORTHO05D008677 6.2e-76 288.5 318 52.2
Duzib093G1750 Durio zibethinus HOM05D007071 ORTHO05D008677 4.0e-75 285.8 319 51.1
Cfa020101 Carpinus fangiana HOM05D007071 ORTHO05D008677 4.9e-73 278.9 323 50.2
Cpa.g.sc222.1 Carica papaya HOM05D007071 ORTHO05D008677 5.4e-72 275.4 326 51.2
CiPaw.09G025100 Carya illinoinensis HOM05D007071 ORTHO05D008677 2.1e-71 273.5 318 49.7
CANSAT64G1821 Cannabis sativa HOM05D007071 ORTHO05D008677 4.6e-71 272.3 324 49.1
TWI77G0807 Tripterygium wilfordii HOM05D007071 ORTHO05D008677 7.8e-71 271.6 326 49.1
Actinidia37784 Actinidia chinensis HOM05D007071 ORTHO05D008677 2.3e-70 270.0 318 47.2
Manes.08G038400 Manihot esculenta HOM05D007071 ORTHO05D008677 5.1e-70 268.9 325 49.5
Dinv25088 Davidia involucrata HOM05D007071 ORTHO05D008677 8.7e-70 268.1 313 48.9
Atru.chr8.1251 Acer truncatum HOM05D007071 ORTHO05D008677 1.1e-69 267.7 301 49.5
PGR004G1089 Punica granatum HOM05D007071 ORTHO05D008677 1.8e-67 260.4 316 47.5
Sc01g0005210 Simmondsia chinensis HOM05D007071 ORTHO05D008677 4.0e-67 259.2 324 45.1
Aqoxy2G00613 Aquilegia oxysepala HOM05D007071 ORTHO05D008677 5.3e-67 258.8 317 48.3
Sabra16G0066300 Salix brachista HOM05D007071 ORTHO05D008677 5.3e-67 258.8 368 42.1
Lj1g0020560 Lotus japonicus HOM05D007071 ORTHO05D008677 2.0e-66 256.9 314 46.8
CsaV3_3G038410 Cucumis sativus L. HOM05D007071 ORTHO05D008677 2.6e-66 256.5 330 48.5
Glyma.19G203500 Glycine max HOM05D007071 ORTHO05D008677 5.8e-66 255.4 312 46.2
Nn2g14444 Nelumbo nucifera HOM05D007071 ORTHO05D008677 5.8e-66 255.4 322 45.7
PSO339G2219 Papaver somniferum HOM05D007071 ORTHO05D008677 9.9e-66 254.6 326 44.5
QL07p025881 Quercus lobata HOM05D007071 ORTHO05D008677 2.9e-65 253.1 321 46.1
Sed0020351 Sechium edule HOM05D007071 ORTHO05D008677 3.8e-65 252.7 324 46.9
MELO3C009585.2 Cucumis melo HOM05D007071 ORTHO05D008677 8.4e-65 251.5 330 47.6
Glyma.03G206000 Glycine max HOM05D007071 ORTHO05D008677 2.4e-64 250.0 312 47.1
VMungo1383G1243 Vigna mungo HOM05D007071 ORTHO05D008677 9.3e-64 248.1 312 45.8
vmacro07528 Vaccinium macrocarpon HOM05D007071 ORTHO05D008677 7.4e-61 238.4 336 43.2
Ciclev10012576m.g Citrus clementina HOM05D007071 ORTHO05D008677 3.7e-60 236.1 252 52.4
RcHm_v2.0_Chr3g0477671 Rosa chinensis HOM05D007071 ORTHO05D008677 4.0e-59 232.6 316 46.2
FvH4_6g21190 Fragaria vesca HOM05D007071 ORTHO05D008677 5.3e-59 232.3 314 45.9
Prupe.7G088000 Prunus persica HOM05D007071 ORTHO05D008677 5.3e-59 232.3 319 46.4
MBI11_g24568_MAGBIO Magnolia biondii HOM05D007071 ORTHO05D008677 2.0e-58 230.3 374 40.9
ECA248G1335 Erigeron canadensis HOM05D007071 ORTHO05D008677 3.4e-58 229.6 313 42.5
ClCG10G017880 Citrullus lanatus HOM05D007071 ORTHO05D008677 1.3e-57 227.6 390 41.0
Phvul.001G199700 Phaseolus vulgaris HOM05D007071 ORTHO05D008677 1.7e-57 227.3 335 45.1
GSVIVG01022502001 Vitis vinifera HOM05D007071 ORTHO05D008677 2.9e-57 226.5 319 44.8
MD14G1046200 Malus domestica HOM05D007071 ORTHO05D008677 1.1e-56 224.6 321 45.8
Medtr7g107150 Medicago truncatula HOM05D007071 ORTHO05D008677 1.2e-55 221.1 317 44.8
Peaxi162Scf00645g00018 Petunia axillaris HOM05D007071 ORTHO05D008677 2.1e-55 220.3 323 42.7
SGA_v2.0_scaffold31G12809 Striga asiatica HOM05D007071 ORTHO05D008677 2.1e-55 220.3 323 42.1
Peaxi162Scf00425g00036 Petunia axillaris HOM05D007071 ORTHO05D008677 2.7e-55 219.9 323 42.7
Sopen01g021160 Solanum pennellii HOM05D007071 ORTHO05D008677 3.5e-55 219.5 314 41.7
TPR.G14411 Trifolium pratense HOM05D007071 ORTHO05D008677 1.0e-54 218.0 287 47.7
HanXRQChr11g0347671 Helianthus annuus HOM05D007071 ORTHO05D008677 2.3e-54 216.9 315 42.2
MSTRG.5919 Avicennia marina HOM05D007071 ORTHO05D008677 3.3e-53 213.0 313 40.3
Lalb_Chr25g0287781 Lupinus albus HOM05D007071 ORTHO05D008677 3.3e-53 213.0 334 42.8
COL.COLO4_29462 Corchorus olitorius HOM05D007071 ORTHO05D008677 9.6e-53 211.5 254 47.6
Rhsim03G0057500 Rhododendron simsii HOM05D007071 ORTHO05D008677 9.6e-53 211.5 280 45.7
Nitab4.5_0000117g0100 Nicotiana tabacum HOM05D007071 ORTHO05D008677 1.8e-51 207.2 342 40.1
Psat3g026600 Pisum sativum HOM05D007071 ORTHO05D008677 3.1e-51 206.5 317 43.5
ATR0697G054 Amborella trichopoda HOM05D007071 ORTHO05D008677 1.5e-50 204.1 359 38.2
Haze_20090 Corylus avellana HOM05D007071 ORTHO05D008677 3.4e-50 203.0 256 48.0
Ah.12g059560 Amaranthus hybridus HOM05D007071 ORTHO05D008677 1.0e-49 201.4 323 42.4
Lsat_1_v5_gn_1_56481 Lactuca sativa HOM05D000137 ORTHO05D000503 2.2e-49 200.3 277 43.3
Thecc.05G182200 Theobroma cacao HOM05D007071 ORTHO05D008677 2.9e-49 199.9 191 55.0
Hund10779 Selenicereus undatus HOM05D007071 ORTHO05D008677 1.1e-48 198.0 314 40.4
arahy.Tifrunner.gnm1.ann1.P13BQJ Arachis hypogaea HOM05D007071 ORTHO05D008677 5.5e-48 195.7 307 40.1
Cc06_g07070 Coffea canephora HOM05D007071 ORTHO05D008677 7.1e-48 195.3 305 41.3
arahy.Tifrunner.gnm1.ann1.B8MRUG Arachis hypogaea HOM05D007071 ORTHO05D008677 2.7e-47 193.4 307 40.4
FAN09G1879 Fragaria x ananassa HOM05D007071 ORTHO05D008677 2.7e-47 193.4 294 41.8
FAN14G3447 Fragaria x ananassa HOM05D007071 ORTHO05D008677 3.5e-47 193.0 285 43.5
TAR633G1119 Trochodendron aralioides HOM05D007071 ORTHO05D008677 1.8e-46 190.7 192 53.1
Migut.J00748 Erythranthe guttata HOM05D007071 ORTHO05D008677 2.3e-46 190.3 314 38.9
Peaxi162Scf00414g00006 Petunia axillaris HOM05D007071 ORTHO05D008677 8.7e-46 188.3 315 41.0
Oeu028127.1 Olea europaea HOM05D007071 ORTHO05D008677 1.1e-45 188.0 262 45.0
EL10Ac5g11787 Beta vulgaris HOM05D007071 ORTHO05D008677 7.4e-45 185.3 283 41.7
Solyc01g056990.3 Solanum lycopersicum HOM05D007071 ORTHO05D008677 4.8e-44 182.6 259 43.2
Nitab4.5_0005508g0020 Nicotiana tabacum HOM05D007071 ORTHO05D008677 1.4e-43 181.0 295 39.0
Eucgr.A02532 Eucalyptus grandis HOM05D007071 ORTHO05D008677 4.5e-42 176.0 210 46.7
AUR62036298 Chenopodium quinoa HOM05D007071 ORTHO05D008677 6.1e-39 165.6 319 37.0
PGSC0003DMG400031498 Solanum tuberosum HOM05D007071 ORTHO05D008677 7.9e-39 165.2 284 37.0
AUR62038410 Chenopodium quinoa HOM05D000573 ORTHO05D008677 2.3e-38 163.7 313 36.7
DCAR_020676 Daucus carota HOM05D007071 ORTHO05D008677 1.7e-36 157.5 174 49.4
Gorai.007G240500 Gossypium raimondii HOM05D007071 ORTHO05D008677 1.5e-34 151.0 174 50.6
SEGI_27522 Sequoiadendron giganteum HOM05D007071 ORTHO05D008677 2.0e-34 150.6 360 30.6
SHI31768 Sapria himalayana HOM05D007071 ORTHO05D008677 1.4e-27 127.9 109 53.2
CSS0047921 Camellia sinensis var. sinensis HOM05D007071 ORTHO05D008677 7.0e-27 125.6 244 36.9
Eucgr.C00285 Eucalyptus grandis HOM05D007071 ORTHO05D008677 7.0e-27 125.6 101 59.4
CDE10G1223 Ceratophyllum demersum HOM05D007071 ORTHO05D008677 1.3e-25 121.3 182 40.7
Gohir.A07G089166 Gossypium hirsutum HOM05D007071 ORTHO05D008677 5.0e-25 119.4 85 67.1
Zm00001eb134480 Zea mays HOM05D007071 ORTHO05D008677 8.2e-20 102.1 260 30.4
AL5G44100 Arabidopsis lyrata HOM05D007071 ORTHO05D008677 1.4e-19 101.3 69 79.7
Gohir.A06G128402 Gossypium hirsutum HOM05D007071 ORTHO05D008677 2.0e-18 97.4 160 40.6
Pp3c26_10880 Physcomitrium patens HOM05D007071 ORTHO05D008677 2.9e-17 93.6 406 24.6
AagrBONN_evm.TU.Sc2ySwM_117.1490 Anthoceros agrestis HOM05D007071 ORTHO05D008677 5.0e-17 92.8 332 26.5
SMO165G0174 Selaginella moellendorffii HOM05D007071 ORTHO05D008677 1.2e-15 88.2 325 26.5
Eucgr.A02531 Eucalyptus grandis HOM05D007071 ORTHO05D008677 3.6e-15 86.7 73 60.3
Gohir.A07G056200 Gossypium hirsutum HOM05D007071 ORTHO05D008677 7.5e-13 79.0 119 40.3
CSS0001330 Camellia sinensis var. sinensis HOM05D007071 ORTHO05D008677 9.1e-11 72.0 65 52.3
MD12G1047800 Malus domestica HOM05D007071 ORTHO05D008677 1.2e-10 71.6 115 42.6
Os12g0623400 Oryza sativa ssp. japonica HOM05D007071 ORTHO05D008677 2.7e-10 70.5 91 44.0
TPR.G40805 Trifolium pratense HOM05D007071 ORTHO05D008677 1.0e-09 68.6 65 53.8
QL02p030777 Quercus lobata HOM05D007071 ORTHO05D008677 1.3e-09 68.2 45 66.7
MD12G1047700 Malus domestica HOM05D007071 ORTHO05D008677 1.7e-09 67.8 102 44.1
CiPaw.16G104200 Carya illinoinensis HOM05D007071 ORTHO05D008677 6.5e-09 65.9 66 54.5
Pp3c4_24350 Physcomitrium patens HOM05D007071 ORTHO05D008677 7.2e-08 62.4 402 21.6
Actinidia03957 Actinidia chinensis HOM05D002116 ORTHO05D002438 9.4e-08 62.0 41 73.2
Mapoly0045s0075 Marchantia polymorpha HOM05D007071 ORTHO05D008677 1.8e-06 57.8 118 29.7
PGSC0003DMG400019076 Solanum tuberosum HOM05D007071 ORTHO05D008677 2.3e-06 57.4 58 48.3


User provided reference genes

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