Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 1.6e-138 496.1 253 100.0
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 6.2e-127 457.6 256 92.2
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 4.0e-110 401.7 262 82.1
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 2.3e-105 386.0 263 78.3
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 7.1e-99 364.4 267 73.0
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 7.1e-99 364.4 266 73.7
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 2.1e-98 362.8 265 73.6
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 3.5e-98 362.1 265 73.6
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 1.1e-96 357.1 266 71.8
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 8.2e-95 350.9 265 74.3
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 9.0e-94 347.4 276 71.0
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 1.5e-85 320.1 271 65.3
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 3.8e-84 315.5 263 64.6
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 1.5e-72 276.9 273 56.8
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 4.4e-72 275.4 276 56.2
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 2.8e-71 272.7 266 57.1
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 1.1e-70 270.8 276 56.2
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 1.8e-70 270.0 202 74.3
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 3.1e-70 269.2 276 55.4
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 2.6e-69 266.2 274 54.0
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 2.2e-68 263.1 240 59.2
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 2.2e-68 263.1 242 58.7
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 3.8e-68 262.3 274 54.0
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 6.5e-68 261.5 253 56.5
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 8.5e-68 261.2 209 64.1
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 1.1e-67 260.8 263 55.5
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 1.5e-67 260.4 270 53.0
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.9e-67 260.0 207 62.8
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 5.5e-67 258.5 207 63.8
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 9.4e-67 257.7 228 61.4
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 1.2e-66 257.3 270 52.2
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 2.1e-66 256.5 265 52.8
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 2.7e-66 256.1 261 53.3
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 1.8e-65 253.4 278 52.9
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 3.0e-65 252.7 211 61.1
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 3.0e-65 252.7 266 54.9
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 4.0e-65 252.3 272 54.0
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 4.0e-65 252.3 217 59.0
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 5.2e-65 251.9 279 50.2
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 5.2e-65 251.9 280 51.1
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 6.7e-65 251.5 270 51.5
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.2e-64 250.8 190 66.3
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 1.2e-64 250.8 208 62.0
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 1.2e-64 250.8 267 54.3
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 4.4e-64 248.8 268 52.2
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 4.4e-64 248.8 266 54.1
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 7.5e-64 248.1 211 60.7
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.3e-63 247.3 254 55.1
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 1.7e-63 246.9 255 54.9
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 6.3e-63 245.0 207 60.9
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 8.2e-63 244.6 207 60.4
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 1.4e-62 243.8 266 51.5
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 1.8e-62 243.4 261 55.6
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 2.4e-62 243.0 203 60.6
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 3.1e-62 242.7 218 56.9
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 4.1e-62 242.3 265 52.8
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 4.1e-62 242.3 193 62.2
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 9.1e-62 241.1 246 54.5
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 1.2e-61 240.7 204 59.3
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 1.6e-61 240.4 209 60.3
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 1.6e-61 240.4 267 50.9
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 1.6e-61 240.4 267 50.2
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 2.0e-61 240.0 260 50.8
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 2.7e-61 239.6 254 52.0
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 2.7e-61 239.6 177 65.0
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 4.5e-61 238.8 203 61.6
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 4.5e-61 238.8 210 59.5
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 4.5e-61 238.8 210 60.0
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 1.3e-60 237.3 269 50.2
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 1.7e-60 236.9 210 59.0
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 5.0e-60 235.3 268 48.9
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 5.0e-60 235.3 207 57.0
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 1.1e-59 234.2 263 50.2
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 1.5e-59 233.8 204 57.8
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 1.9e-59 233.4 265 50.6
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 7.2e-59 231.5 268 50.0
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 9.4e-59 231.1 191 60.2
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 2.7e-58 229.6 268 50.0
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 2.7e-58 229.6 190 57.9
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 8.0e-58 228.0 197 58.9
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 2.3e-57 226.5 212 58.0
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 2.3e-57 226.5 191 57.6
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 3.0e-57 226.1 208 59.1
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 6.8e-57 224.9 232 52.2
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 4.4e-56 222.2 260 51.2
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 1.7e-55 220.3 221 53.4
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 4.8e-55 218.8 260 50.4
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 1.8e-54 216.9 167 64.7
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 4.1e-54 215.7 215 55.8
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 1.3e-52 210.7 269 47.2
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 3.0e-49 199.5 206 49.5
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 4.0e-49 199.1 154 64.9
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 4.0e-49 199.1 204 52.5
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 4.4e-48 195.7 262 49.2
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 2.8e-47 193.0 245 45.3
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 4.9e-47 192.2 173 60.7
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 4.9e-47 192.2 149 65.8
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 8.3e-47 191.4 154 61.0
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 2.4e-46 189.9 153 62.7
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 5.4e-46 188.7 167 57.5
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 8.6e-44 181.4 207 46.4
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 2.5e-43 179.9 176 55.1
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 2.5e-43 179.9 177 54.2
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 1.7e-39 167.2 249 40.6
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 8.3e-39 164.9 179 53.6
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 4.1e-38 162.5 138 59.4
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 4.1e-38 162.5 149 55.7
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 7.8e-37 158.3 180 51.1
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 3.4e-32 142.9 217 40.6
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 1.7e-31 140.6 113 59.3
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 2.2e-31 140.2 258 37.2
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 2.4e-30 136.7 219 38.8
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 6.4e-23 112.1 216 34.3
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 6.4e-23 112.1 216 34.3
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 4.3e-19 99.4 123 40.7
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 7.3e-19 98.6 101 49.5
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 1.4e-17 94.4 81 59.3
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 6.8e-17 92.0 111 50.5
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 5.4e-14 82.4 154 36.4
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 4.6e-13 79.3 255 28.6
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 1.3e-12 77.8 100 46.0
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 6.6e-12 75.5 103 42.7
C04p10650 Brassica napus HOM05D001890 ORTHO05D008163 2.6e-08 63.5 30 90.0
Aa31LG5G17140 Aethionema arabicum HOM05D001890 ORTHO05D008163 1.9e-06 57.4 36 72.2
SalBow1G6520 Salvia bowleyana HOM05D001890 ORTHO05D008163 7.1e-06 55.5 72 44.4


User provided reference genes

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