Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G06265 Arabidopsis thaliana HOM05D008756 ORTHO05D003415 9.3e-87 323.6 168 100.0
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 1.7e-43 179.9 107 91.6
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 1.0e-40 170.6 107 90.7
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 1.5e-36 156.8 107 82.2
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 2.6e-36 156.0 107 83.2
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 1.6e-33 146.7 107 75.7
BolC9t59818H Brassica oleracea HOM05D008756 ORTHO05D003415 2.9e-32 142.5 107 73.8
BcaC06g32356 Brassica carinata HOM05D008756 ORTHO05D003415 2.3e-29 132.9 107 72.9
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 9.8e-28 127.5 101 71.3
A10p30210 Brassica napus HOM05D008756 ORTHO05D003415 2.8e-27 125.9 107 68.2
C09p70620 Brassica napus HOM05D008756 ORTHO05D003415 9.1e-26 120.9 107 66.4
BraA10t45059Z Brassica rapa HOM05D008756 ORTHO05D003415 9.1e-26 120.9 107 66.4
BolC9t59806H Brassica oleracea HOM05D008756 ORTHO05D003415 4.0e-21 105.5 79 75.9
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.2e-20 104.0 105 57.1
BolC9t59816H Brassica oleracea HOM05D008756 ORTHO05D003415 3.4e-20 102.4 84 69.0
BolC9t59813H Brassica oleracea HOM05D008756 ORTHO05D003415 4.4e-20 102.1 84 69.0
BolC9t59804H Brassica oleracea HOM05D008756 ORTHO05D003415 1.2e-17 94.0 84 65.5
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 1.9e-15 86.7 106 51.9
A10p09330 Brassica napus HOM05D008756 ORTHO05D003415 2.5e-15 86.3 64 71.9
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 3.3e-15 85.9 105 49.5
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 4.3e-15 85.5 106 50.0
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 9.5e-15 84.3 106 50.0
A10p09210 Brassica napus HOM05D008756 ORTHO05D003415 1.2e-14 84.0 84 59.5
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 2.8e-14 82.8 102 48.0
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 2.8e-14 82.8 89 53.9
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 2.8e-14 82.8 106 48.1
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 3.6e-14 82.4 106 50.9
BolC9t59814H Brassica oleracea HOM05D008756 ORTHO05D003415 8.0e-14 81.3 57 77.2
BraA10t43000Z Brassica rapa HOM05D008756 ORTHO05D003415 8.0e-14 81.3 64 71.9
BraA10t43004Z Brassica rapa HOM05D008756 ORTHO05D003415 8.0e-14 81.3 64 71.9
A10p09270 Brassica napus HOM05D008756 ORTHO05D003415 1.0e-13 80.9 64 71.9
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 1.0e-13 80.9 106 50.9
A10p09190 Brassica napus HOM05D008756 ORTHO05D003415 1.4e-13 80.5 64 71.9
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 1.4e-13 80.5 106 48.1
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.4e-13 80.5 109 47.7
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.8e-13 80.1 106 46.2
A10p09290 Brassica napus HOM05D008756 ORTHO05D003415 2.3e-13 79.7 84 57.1
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.3e-13 79.7 106 46.2
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 2.3e-13 79.7 106 49.1
BraA10t43008Z Brassica rapa HOM05D008756 ORTHO05D003415 3.0e-13 79.3 64 71.9
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 3.0e-13 79.3 88 52.3
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 5.2e-13 78.6 104 48.1
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 6.8e-13 78.2 106 46.2
A10p30190 Brassica napus HOM05D008756 ORTHO05D003415 8.9e-13 77.8 64 68.8
C09p70600 Brassica napus HOM05D008756 ORTHO05D003415 8.9e-13 77.8 64 68.8
BraA10t45057Z Brassica rapa HOM05D008756 ORTHO05D003415 8.9e-13 77.8 64 68.8
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 8.9e-13 77.8 89 52.8
BraA10t45055Z Brassica rapa HOM05D008756 ORTHO05D003415 1.2e-12 77.4 71 67.6
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 1.2e-12 77.4 106 47.2
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 1.2e-12 77.4 106 47.2
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 2.0e-12 76.6 106 45.3
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 2.6e-12 76.3 102 45.1
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 3.4e-12 75.9 88 52.3
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 4.4e-12 75.5 88 53.4
BcaNung05843 Brassica carinata HOM05D008756 ORTHO05D003415 5.7e-12 75.1 58 72.4
BcaNung05844 Brassica carinata HOM05D008756 ORTHO05D003415 5.7e-12 75.1 58 72.4
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 5.7e-12 75.1 106 44.3
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 5.7e-12 75.1 87 49.4
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 7.5e-12 74.7 110 45.5
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 7.5e-12 74.7 99 46.5
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 7.5e-12 74.7 99 46.5
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 7.5e-12 74.7 99 46.5
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 1.3e-11 73.9 105 45.7
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 1.7e-11 73.6 112 42.9
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 2.9e-11 72.8 87 49.4
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 2.9e-11 72.8 159 37.1
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 3.7e-11 72.4 94 44.7
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 6.4e-11 71.6 106 44.3
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 8.3e-11 71.2 106 45.3
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.1e-10 70.9 94 43.6
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.1e-10 70.9 90 50.0
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 1.4e-10 70.5 106 44.3
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 1.4e-10 70.5 87 47.1
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.8e-10 70.1 109 40.4
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.8e-10 70.1 87 49.4
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 1.8e-10 70.1 106 44.3
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 1.8e-10 70.1 110 43.6
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 1.8e-10 70.1 106 44.3
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 1.8e-10 70.1 87 49.4
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 3.2e-10 69.3 106 41.5
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 3.2e-10 69.3 105 45.7
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 3.2e-10 69.3 110 41.8
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 3.2e-10 69.3 86 47.7
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 4.1e-10 68.9 86 50.0
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 4.1e-10 68.9 88 46.6
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 4.1e-10 68.9 105 44.8
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 4.1e-10 68.9 109 40.4
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 4.1e-10 68.9 106 42.5
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 4.1e-10 68.9 87 47.1
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 5.4e-10 68.6 110 44.5
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 5.4e-10 68.6 106 40.6
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 5.4e-10 68.6 106 40.6
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 5.4e-10 68.6 106 40.6
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 7.0e-10 68.2 110 42.7
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 7.0e-10 68.2 87 44.8
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 9.2e-10 67.8 123 39.0
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 9.2e-10 67.8 109 42.2
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 9.2e-10 67.8 110 43.6
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 9.2e-10 67.8 110 43.6
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 9.2e-10 67.8 101 42.6
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.2e-09 67.4 106 41.5
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 1.2e-09 67.4 89 43.8
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 1.6e-09 67.0 88 44.3
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 2.7e-09 66.2 87 44.8
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 3.5e-09 65.9 88 42.0
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 3.5e-09 65.9 109 42.2
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 3.5e-09 65.9 88 44.3
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 3.5e-09 65.9 110 40.9
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 4.6e-09 65.5 88 45.5
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 4.6e-09 65.5 87 46.0
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 4.6e-09 65.5 113 41.6
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 4.6e-09 65.5 83 43.4
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 5.9e-09 65.1 122 40.2
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 7.8e-09 64.7 88 43.2
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 7.8e-09 64.7 87 43.7
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 7.8e-09 64.7 87 43.7
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 1.0e-08 64.3 88 44.3
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.3e-08 63.9 97 42.3
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 1.3e-08 63.9 88 44.3
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.3e-08 63.9 91 45.1
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.3e-08 63.9 96 40.6
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.3e-08 63.9 96 40.6
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.3e-08 63.9 88 44.3
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 1.7e-08 63.5 110 40.9
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 1.7e-08 63.5 87 43.7
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 2.3e-08 63.2 110 40.0
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 3.0e-08 62.8 91 42.9
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 3.0e-08 62.8 87 44.8
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 3.0e-08 62.8 86 43.0
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 3.9e-08 62.4 91 42.9
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.9e-08 62.4 86 50.0
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.9e-08 62.4 86 50.0
A10p30170 Brassica napus HOM05D008756 ORTHO05D000925 5.0e-08 62.0 62 64.5
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 5.0e-08 62.0 90 43.3
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 5.0e-08 62.0 92 43.5
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 5.0e-08 62.0 86 50.0
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 5.0e-08 62.0 83 42.2
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 6.6e-08 61.6 90 41.1
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 6.6e-08 61.6 87 43.7
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 6.6e-08 61.6 102 40.2
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 6.6e-08 61.6 103 36.9
C09p70580 Brassica napus HOM05D008756 ORTHO05D000925 1.1e-07 60.8 62 62.9
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 1.5e-07 60.5 101 42.6
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.5e-07 60.5 86 48.8
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 1.5e-07 60.5 106 37.7
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 1.9e-07 60.1 101 41.6
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 2.5e-07 59.7 88 43.2
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 2.5e-07 59.7 101 41.6
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 2.5e-07 59.7 87 43.7
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 3.3e-07 59.3 79 45.6
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 3.3e-07 59.3 88 44.3
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 3.3e-07 59.3 88 44.3
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 3.3e-07 59.3 97 42.3
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 3.3e-07 59.3 114 40.4
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 4.3e-07 58.9 103 39.8
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 4.3e-07 58.9 91 39.6
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 4.3e-07 58.9 106 36.8
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 4.3e-07 58.9 100 39.0
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 5.6e-07 58.5 88 43.2
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 7.3e-07 58.2 83 41.0
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 9.5e-07 57.8 96 41.7
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 9.5e-07 57.8 96 41.7
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 1.2e-06 57.4 96 41.7
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 1.2e-06 57.4 89 42.7
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 1.2e-06 57.4 106 34.9
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.2e-06 57.4 106 34.9
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.2e-06 57.4 106 34.9
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 1.6e-06 57.0 91 41.8
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 1.6e-06 57.0 105 37.1
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 2.1e-06 56.6 93 40.9
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 2.1e-06 56.6 103 36.9
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 2.8e-06 56.2 102 43.1
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 2.8e-06 56.2 87 42.5
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 2.8e-06 56.2 151 33.1
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 2.8e-06 56.2 126 35.7
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 2.8e-06 56.2 86 45.3
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 2.8e-06 56.2 85 40.0
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 4.7e-06 55.5 92 38.0
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 4.7e-06 55.5 87 39.1
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 6.2e-06 55.1 109 38.5


User provided reference genes

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