Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G05930 Arabidopsis thaliana HOM05D005780 ORTHO05D007289 1.2e-126 456.4 220 100.0
AL6G15850 Arabidopsis lyrata HOM05D005780 ORTHO05D007289 1.1e-114 416.8 213 93.9
Carub.0006s0481 Capsella rubella HOM05D005780 ORTHO05D007289 2.3e-109 399.1 213 90.1
CARHR207290 Cardamine hirsuta HOM05D005780 ORTHO05D007289 7.1e-103 377.5 214 86.0
Sp6g36970 Schrenkiella parvula HOM05D005780 ORTHO05D007289 7.1e-103 377.5 213 86.4
Thhalv10014411m.g Eutrema salsugineum HOM05D005780 ORTHO05D007289 1.0e-101 373.6 213 85.0
Aa31LG11G6960 Aethionema arabicum HOM05D005780 ORTHO05D007289 4.8e-99 364.8 229 79.9
BraA10t45082Z Brassica rapa HOM05D005780 ORTHO05D007289 1.6e-94 349.7 213 81.2
C09p70870 Brassica napus HOM05D005780 ORTHO05D007289 6.0e-94 347.8 214 81.8
BolC9t59846H Brassica oleracea HOM05D005780 ORTHO05D007289 6.0e-94 347.8 214 81.8
BcaC06g32303 Brassica carinata HOM05D005780 ORTHO05D007289 3.0e-93 345.5 214 81.3
THA.LOC104823134 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 1.1e-87 327.0 213 74.2
Cpa.g.sc19.252 Carica papaya HOM05D005780 ORTHO05D007289 6.1e-70 268.1 215 63.7
Manes.07G122900 Manihot esculenta HOM05D005780 ORTHO05D007289 1.6e-67 260.0 213 60.1
Dinv34450 Davidia involucrata HOM05D005780 ORTHO05D007289 1.2e-65 253.8 212 59.9
Nn2g13534 Nelumbo nucifera HOM05D005780 ORTHO05D007289 3.4e-65 252.3 214 61.7
CANSAT56G3446 Cannabis sativa HOM05D005780 ORTHO05D007289 5.9e-65 251.5 213 61.5
PSO384G4288 Papaver somniferum HOM05D005780 ORTHO05D007289 5.9e-65 251.5 213 57.7
Atru.chr12.271 Acer truncatum HOM05D005780 ORTHO05D007289 7.7e-65 251.1 213 57.3
GSVIVG01016433001 Vitis vinifera HOM05D005780 ORTHO05D007289 2.2e-64 249.6 213 59.6
Hma1.2p1_0039F.1_g024930 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 3.8e-64 248.8 213 58.7
PSO339G4705 Papaver somniferum HOM05D005780 ORTHO05D007289 5.0e-64 248.4 217 58.5
Dinv16281 Davidia involucrata HOM05D005780 ORTHO05D007289 7.2e-63 244.6 214 58.4
Haze_17154 Corylus avellana HOM05D005780 ORTHO05D007289 2.1e-62 243.0 213 57.7
Gorai.011G274500 Gossypium raimondii HOM05D005780 ORTHO05D007289 3.6e-62 242.3 213 58.2
Eucgr.J00968 Eucalyptus grandis HOM05D005780 ORTHO05D007289 4.6e-62 241.9 214 56.5
Glyma.11G225300 Glycine max HOM05D005780 ORTHO05D007289 1.0e-61 240.7 213 56.8
Prupe.2G243100 Prunus persica HOM05D005780 ORTHO05D007289 1.4e-61 240.4 213 56.8
QL08p062087 Quercus lobata HOM05D005780 ORTHO05D007289 3.0e-61 239.2 213 56.8
TAR623G0797 Trochodendron aralioides HOM05D005780 ORTHO05D007289 3.0e-61 239.2 213 57.3
Actinidia02380 Actinidia chinensis HOM05D005780 ORTHO05D007289 1.1e-60 237.3 213 55.9
CsaV3_6G001510 Cucumis sativus L. HOM05D005780 ORTHO05D007289 1.1e-60 237.3 213 55.9
Cfa001395 Carpinus fangiana HOM05D005780 ORTHO05D007289 2.0e-60 236.5 213 56.8
Lalb_Chr15g0084461 Lupinus albus HOM05D005780 ORTHO05D007289 2.0e-60 236.5 216 56.0
RcHm_v2.0_Chr1g0368881 Rosa chinensis HOM05D005780 ORTHO05D007289 2.0e-60 236.5 213 59.6
Glyma.18G032000 Glycine max HOM05D005780 ORTHO05D007289 2.6e-60 236.1 213 56.8
Ciclev10032579m.g Citrus clementina HOM05D005780 ORTHO05D007289 9.7e-60 234.2 180 64.4
PGR044G2210 Punica granatum HOM05D005780 ORTHO05D007289 9.7e-60 234.2 221 57.0
Sc14g0004720 Simmondsia chinensis HOM05D005780 ORTHO05D007289 9.7e-60 234.2 213 58.7
Oeu018986.1 Olea europaea HOM05D005780 ORTHO05D007289 1.7e-59 233.4 215 56.7
Lj6g0000720 Lotus japonicus HOM05D005780 ORTHO05D007289 2.2e-59 233.0 213 55.4
Potri.008G062100 Populus trichocarpa HOM05D005780 ORTHO05D007289 2.2e-59 233.0 221 54.3
Gohir.A10G226300 Gossypium hirsutum HOM05D005780 ORTHO05D007289 2.8e-59 232.6 221 55.7
Sabra08G0045700 Salix brachista HOM05D005780 ORTHO05D007289 2.8e-59 232.6 221 53.8
COL.COLO4_25579 Corchorus olitorius HOM05D005780 ORTHO05D007289 3.7e-59 232.3 243 53.1
Gohir.A13G017500 Gossypium hirsutum HOM05D005780 ORTHO05D007289 3.7e-59 232.3 213 55.9
Gorai.013G020600 Gossypium raimondii HOM05D005780 ORTHO05D007289 3.7e-59 232.3 214 56.1
CAN.G115.6 Capsicum annuum HOM05D005780 ORTHO05D007289 6.3e-59 231.5 216 56.9
FvH4_7g23620 Fragaria vesca HOM05D005780 ORTHO05D007289 6.3e-59 231.5 213 57.7
Sed0012096 Sechium edule HOM05D005780 ORTHO05D007289 6.3e-59 231.5 213 54.5
Hund13812 Selenicereus undatus HOM05D005780 ORTHO05D007289 6.3e-59 231.5 213 55.4
TPR.G33709 Trifolium pratense HOM05D005780 ORTHO05D007289 6.3e-59 231.5 213 55.9
FAN03G3464 Fragaria x ananassa HOM05D005780 ORTHO05D007289 8.2e-59 231.1 213 57.7
arahy.Tifrunner.gnm1.ann1.BF464R Arachis hypogaea HOM05D005780 ORTHO05D007289 1.1e-58 230.7 216 57.4
Phvul.001G238600 Phaseolus vulgaris HOM05D005780 ORTHO05D007289 1.8e-58 229.9 213 55.9
Ah.16g102800 Amaranthus hybridus HOM05D005780 ORTHO05D007289 2.4e-58 229.6 213 54.9
Gohir.D13G018600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 2.4e-58 229.6 213 55.9
Aqoxy1G00787 Aquilegia oxysepala HOM05D005780 ORTHO05D007289 5.3e-58 228.4 213 55.4
arahy.Tifrunner.gnm1.ann1.Y0QE0E Arachis hypogaea HOM05D005780 ORTHO05D007289 5.3e-58 228.4 215 57.2
Gohir.D10G238600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 1.5e-57 226.9 163 67.5
Thecc.10G030600 Theobroma cacao HOM05D005780 ORTHO05D007289 1.5e-57 226.9 208 57.2
MSTRG.251 Avicennia marina HOM05D005780 ORTHO05D007289 4.5e-57 225.3 216 54.6
Cc02_g07200 Coffea canephora HOM05D005780 ORTHO05D007289 1.7e-56 223.4 213 52.1
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 2.2e-56 223.0 185 63.2
Gohir.A10G226266 Gossypium hirsutum HOM05D005780 ORTHO05D007289 2.2e-56 223.0 155 69.0
VMungo1383G0024 Vigna mungo HOM05D005780 ORTHO05D007289 2.2e-56 223.0 216 55.6
Hma1.2p1_0039F.1_g024940 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 3.8e-56 222.2 157 65.6
Lj8A74T69 Lonicera japonica HOM05D005780 ORTHO05D007289 3.8e-56 222.2 155 67.7
Ca_17131_v3 Cicer arietinum L. HOM05D005780 ORTHO05D007289 6.5e-56 221.5 213 53.1
Peaxi162Scf00140g01357 Petunia axillaris HOM05D005780 ORTHO05D007289 1.9e-55 219.9 214 51.9
Psat5g125560 Pisum sativum HOM05D005780 ORTHO05D007289 1.9e-55 219.9 213 53.1
Solyc03g079850.4 Solanum lycopersicum HOM05D005780 ORTHO05D007289 1.9e-55 219.9 214 55.6
MSTRG.8290 Avicennia marina HOM05D005780 ORTHO05D007289 2.5e-55 219.5 215 53.0
Sopen03g027310 Solanum pennellii HOM05D005780 ORTHO05D007289 2.5e-55 219.5 214 55.6
Rhsim09G0170100 Rhododendron simsii HOM05D005780 ORTHO05D007289 5.5e-55 218.4 232 50.4
Nitab4.5_0002822g0060 Nicotiana tabacum HOM05D005780 ORTHO05D007289 1.6e-54 216.9 214 53.3
unitig_22.g6680 Utricularia gibba HOM05D005780 ORTHO05D007289 1.0e-53 214.2 213 53.5
Medtr3g069620 Medicago truncatula HOM05D005780 ORTHO05D007289 1.8e-53 213.4 213 53.5
MD01G1142100 Malus domestica HOM05D005780 ORTHO05D007289 5.2e-53 211.8 213 52.6
SalBow6G1112 Salvia bowleyana HOM05D005780 ORTHO05D007289 2.6e-52 209.5 228 48.2
SalBow6G4646 Salvia bowleyana HOM05D005780 ORTHO05D007289 2.6e-52 209.5 228 48.2
MD07G1207800 Malus domestica HOM05D005780 ORTHO05D007289 5.7e-52 208.4 213 54.0
MBI14_g02858_MAGBIO Magnolia biondii HOM05D005780 ORTHO05D007289 7.4e-52 208.0 191 56.5
THA.LOC104816572 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 7.4e-52 208.0 137 75.9
vmacro10198 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 7.4e-52 208.0 264 45.5
HanXRQChr07g0202011 Helianthus annuus HOM05D005780 ORTHO05D007289 9.7e-52 207.6 213 51.2
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 2.8e-51 206.1 207 52.2
DCAR_011758 Daucus carota HOM05D005780 ORTHO05D007289 3.7e-51 205.7 174 57.5
Migut.F01304 Erythranthe guttata HOM05D005780 ORTHO05D007289 1.4e-50 203.8 215 50.7
Lsat_1_v5_gn_2_117001 Lactuca sativa HOM05D005780 ORTHO05D007289 1.4e-50 203.8 213 49.8
ECA238G2932 Erigeron canadensis HOM05D005780 ORTHO05D007289 5.3e-50 201.8 214 49.5
Duzib128G1582 Durio zibethinus HOM05D005780 ORTHO05D007289 3.5e-49 199.1 213 48.8
Lsat_1_v5_gn_9_63040 Lactuca sativa HOM05D005780 ORTHO05D007289 3.2e-47 192.6 214 47.2
EL10Ac2g04667 Beta vulgaris HOM05D005780 ORTHO05D007289 9.4e-47 191.0 214 49.1
HanXRQChr09g0246921 Helianthus annuus HOM05D005780 ORTHO05D007289 1.2e-46 190.7 217 47.9
ECA232G1234 Erigeron canadensis HOM05D005780 ORTHO05D007289 3.0e-45 186.0 214 48.6
Zm00001eb289450 Zea mays HOM05D005780 ORTHO05D007289 8.8e-45 184.5 193 52.8
FAN01G2814 Fragaria x ananassa HOM05D005780 ORTHO05D007289 9.7e-44 181.0 162 56.8
FAN06G3968 Fragaria x ananassa HOM05D005780 ORTHO05D007289 9.7e-44 181.0 234 46.2
Duzib114G0105 Durio zibethinus HOM05D005780 ORTHO05D007289 1.3e-43 180.6 137 65.7
Nitab4.5_0000399g0020 Nicotiana tabacum HOM05D005780 ORTHO05D007289 1.4e-42 177.2 199 49.7
ATR0210G010 Amborella trichopoda HOM05D005780 ORTHO05D007289 2.4e-42 176.4 156 53.8
Eucgr.L02372 Eucalyptus grandis HOM05D005780 ORTHO05D007289 5.3e-42 175.3 137 64.2
Mapoly0001s0310 Marchantia polymorpha HOM05D005780 ORTHO05D007289 1.2e-41 174.1 163 52.8
AagrBONN_evm.TU.Sc2ySwM_362.219 Anthoceros agrestis HOM05D005780 ORTHO05D007289 3.5e-41 172.6 165 53.3
Pp3c19_5660 Physcomitrium patens HOM05D005780 ORTHO05D007289 4.5e-41 172.2 163 49.7
CiPaw.01G293600 Carya illinoinensis HOM05D005780 ORTHO05D007289 1.0e-40 171.0 137 65.0
FAN06G4825 Fragaria x ananassa HOM05D005780 ORTHO05D007289 1.3e-40 170.6 176 52.3
FAN10G2246 Fragaria x ananassa HOM05D005780 ORTHO05D007289 2.9e-40 169.5 176 51.7
Sed0009457 Sechium edule HOM05D005780 ORTHO05D007289 1.9e-39 166.8 114 71.1
Zm00001eb226980 Zea mays HOM05D005780 ORTHO05D007289 2.7e-38 162.9 135 62.2
Zm00001eb412440 Zea mays HOM05D005780 ORTHO05D007289 6.1e-38 161.8 156 55.1
Eucgr.I02190 Eucalyptus grandis HOM05D005780 ORTHO05D007289 8.0e-38 161.4 137 60.6
SMO134G0044 Selaginella moellendorffii HOM05D005780 ORTHO05D007289 3.0e-37 159.5 133 59.4
HPP92_015198 Vanilla planifolia HOM05D005780 ORTHO05D007289 2.6e-36 156.4 145 54.5
vmacro07012 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 6.3e-35 151.8 125 58.4
DCAR_024851 Daucus carota HOM05D005780 ORTHO05D007289 9.1e-34 147.9 137 53.3
MELO3C008260.2 Cucumis melo HOM05D005780 ORTHO05D007289 1.6e-30 137.1 103 63.1
MCO05G626 Micromonas commoda HOM05D005780 ORTHO05D007289 2.1e-30 136.7 135 51.1
Cre10.g457450 Chlamydomonas reinhardtii HOM05D005780 ORTHO05D007289 2.8e-30 136.3 141 48.9
PRCOL_00006562 Prasinoderma coloniale HOM05D005780 ORTHO05D007289 1.8e-29 133.7 143 48.3
ClCG11G006480 Citrullus lanatus HOM05D005780 ORTHO05D007289 2.0e-28 130.2 175 45.1
Pp3c22_3300 Physcomitrium patens HOM05D005780 ORTHO05D007289 2.6e-28 129.8 138 46.4
SGA_v2.0_scaffold76G25041 Striga asiatica HOM05D005780 ORTHO05D007289 7.5e-28 128.3 108 57.4
Rhsim03G0138300 Rhododendron simsii HOM05D005780 ORTHO05D007289 2.7e-17 93.2 109 45.9
Actinidia13899 Actinidia chinensis HOM05D005780 ORTHO05D007289 5.9e-17 92.0 62 66.1
AUR62022803 Chenopodium quinoa HOM05D005780 ORTHO05D007289 1.0e-16 91.3 122 42.6
AUR62012166 Chenopodium quinoa HOM05D005780 ORTHO05D007289 4.3e-15 85.9 100 43.0
Zm00001eb137070 Zea mays HOM05D005780 ORTHO05D007289 3.1e-13 79.7 60 65.0
CDE02G3808 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 1.2e-12 77.8 76 55.3
SEGI_25575 Sequoiadendron giganteum HOM05D005780 ORTHO05D007289 1.3e-11 74.3 63 54.0
ClCG11G006490 Citrullus lanatus HOM05D005780 ORTHO05D007289 1.9e-10 70.5 126 31.7
Os05g0453500 Oryza sativa ssp. japonica HOM05D005780 ORTHO05D007289 1.2e-09 67.8 106 40.6
CDE02G3151 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 3.5e-09 66.2 92 40.2
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 6.0e-09 65.5 76 50.0


User provided reference genes

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