Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 0.0e+00 1223.8 633 100.0
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 0.0e+00 1116.3 633 89.6
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 2.5e-286 988.4 633 82.8
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.3e-271 939.5 595 82.2
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 3.3e-262 908.3 635 75.9
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 2.4e-260 902.1 634 75.4
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 5.9e-259 897.5 635 75.7
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 1.3e-258 896.3 579 81.5
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.0e-255 886.7 641 73.8
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 5.1e-255 884.4 673 71.6
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 3.5e-243 845.1 633 72.0
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.5e-230 803.1 640 65.2
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 3.3e-209 732.3 639 62.8
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 5.2e-207 724.9 636 62.3
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 8.3e-205 717.6 637 61.5
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 3.5e-203 712.2 636 61.0
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 3.5e-203 712.2 636 61.0
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 1.0e-202 710.7 637 60.9
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 1.0e-202 710.7 636 60.8
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 7.3e-201 704.5 637 60.8
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 7.3e-201 704.5 637 60.8
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 8.3e-197 691.0 638 60.5
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.3e-186 657.1 691 54.7
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 2.0e-182 643.3 654 52.9
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 2.2e-181 639.8 656 53.5
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 3.5e-179 632.5 649 53.8
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 8.7e-178 627.9 648 51.9
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 4.3e-177 625.5 659 53.1
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 7.3e-177 624.8 645 55.5
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 7.3e-177 624.8 391 82.6
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 1.6e-176 623.6 656 52.0
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.1e-175 620.9 647 52.6
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 2.4e-175 619.8 658 51.8
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 2.0e-174 616.7 645 52.6
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 1.3e-173 614.0 655 52.2
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.7e-173 613.6 637 51.5
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 2.2e-173 613.2 661 50.5
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 2.9e-173 612.8 653 52.4
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 4.9e-173 612.1 623 53.1
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 4.9e-173 612.1 626 53.0
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.9e-172 610.1 653 51.8
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 3.2e-172 609.4 637 52.1
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 7.1e-172 608.2 650 51.5
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 2.1e-171 606.7 665 52.2
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 7.9e-171 604.7 664 52.1
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 1.3e-170 604.0 640 51.7
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 3.0e-170 602.8 655 50.8
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 5.1e-170 602.1 653 51.5
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 6.6e-170 601.7 650 50.6
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 8.7e-170 601.3 656 51.5
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.1e-169 600.9 685 49.5
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 1.9e-169 600.1 653 51.9
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 4.3e-169 599.0 654 50.2
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 2.8e-168 596.3 646 50.9
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 3.6e-168 595.9 644 50.0
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 3.6e-168 595.9 643 51.6
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 6.2e-168 595.1 662 50.2
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 6.2e-168 595.1 652 50.2
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 9.0e-167 591.3 655 50.2
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.5e-166 590.5 695 48.3
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 1.5e-166 590.5 655 49.5
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 2.0e-166 590.1 653 51.3
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 2.6e-166 589.7 646 51.2
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 3.4e-166 589.3 648 53.2
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 3.4e-166 589.3 657 49.2
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 9.9e-166 587.8 644 51.1
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 2.9e-165 586.3 658 49.5
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 2.4e-164 583.2 646 49.8
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 1.2e-163 580.9 636 50.2
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 1.6e-163 580.5 653 49.2
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 6.0e-163 578.6 648 48.9
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 6.0e-163 578.6 632 50.3
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.5e-161 573.2 604 52.2
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 5.6e-161 572.0 637 49.0
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 7.4e-161 571.6 622 49.8
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 9.6e-161 571.2 673 48.1
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 1.6e-160 570.5 643 50.1
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 2.1e-160 570.1 646 49.2
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 3.7e-160 569.3 621 50.2
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 4.8e-160 568.9 646 49.5
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 8.1e-160 568.2 549 55.2
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 4.0e-159 565.8 655 47.0
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 7.6e-158 561.6 634 49.1
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 2.2e-157 560.1 639 48.4
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 2.2e-157 560.1 661 47.5
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 3.8e-157 559.3 653 48.2
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 2.5e-156 556.6 642 48.1
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 1.2e-155 554.3 651 49.6
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 1.6e-155 553.9 492 59.6
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 2.1e-155 553.5 656 49.5
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 6.0e-155 552.0 543 53.4
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 3.0e-154 549.7 626 50.0
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 1.1e-153 547.7 668 48.7
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 7.4e-153 545.0 593 51.8
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 2.8e-152 543.1 487 61.6
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 2.8e-152 543.1 628 48.7
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 1.8e-151 540.4 648 48.5
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 2.4e-151 540.0 542 52.6
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 3.1e-151 539.7 500 56.6
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 4.1e-151 539.3 628 47.8
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 2.6e-150 536.6 617 49.8
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 2.6e-150 536.6 637 46.5
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 4.5e-150 535.8 634 47.0
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 2.2e-149 533.5 548 54.0
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 3.2e-148 529.6 579 49.7
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.6e-147 527.3 646 47.4
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 2.5e-145 520.0 644 49.7
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.3e-144 517.7 611 47.3
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.8e-144 516.5 726 44.8
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 2.8e-144 516.5 636 48.3
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 5.3e-143 512.3 607 47.4
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 2.0e-142 510.4 641 44.5
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 7.7e-142 508.4 640 45.0
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 3.8e-141 506.1 614 48.5
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 1.2e-139 501.1 495 54.5
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 2.3e-138 496.9 478 54.8
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 2.6e-137 493.4 489 54.0
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.7e-136 490.7 576 48.4
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 3.7e-136 489.6 507 51.9
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 1.8e-135 487.3 658 46.4
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 2.2e-133 480.3 537 50.8
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 7.2e-132 475.3 631 43.3
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 2.7e-131 473.4 521 48.4
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 5.2e-130 469.2 534 48.3
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.7e-128 464.2 639 43.3
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 2.1e-123 447.2 550 46.0
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 5.5e-116 422.5 484 46.9
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 5.5e-116 422.5 484 46.9
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 1.2e-115 421.4 697 39.0
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 4.7e-115 419.5 486 47.5
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 6.8e-114 415.6 630 40.8
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.3e-112 411.4 422 51.4
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 2.7e-110 403.7 505 45.1
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.6e-107 394.4 506 45.3
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 1.6e-107 394.4 502 45.8
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 8.3e-96 355.5 644 38.8
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 2.0e-86 324.3 624 36.9
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 1.1e-76 292.0 498 37.8
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 2.6e-73 280.8 690 32.0
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.3e-56 225.3 360 38.1
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 1.3e-53 215.3 421 32.5
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 6.2e-51 206.5 316 41.1
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 4.6e-46 190.3 195 46.7
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 4.3e-36 157.1 113 67.3
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.1e-26 125.9 186 38.2
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 4.4e-20 104.0 64 71.9
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 4.2e-15 87.4 176 34.7
CARHR207570 Cardamine hirsuta HOM05D004604 ORTHO05D116251 4.4e-12 77.4 73 56.2
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-09 68.6 64 51.6


User provided reference genes

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