Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.7e-129 466.1 240 100.0
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 3.5e-119 431.8 245 91.4
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 7.7e-119 430.6 243 93.4
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 7.5e-106 387.5 240 81.7
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.1e-104 383.6 240 81.2
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 6.5e-102 374.4 240 83.3
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 2.5e-101 372.5 241 79.7
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 2.5e-101 372.5 241 79.7
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 4.2e-101 371.7 241 79.3
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 4.2e-101 371.7 241 79.3
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.2e-90 337.0 251 75.3
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 7.5e-90 334.3 241 73.9
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.4e-66 255.4 243 59.7
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.1e-44 183.3 220 49.1
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.1e-44 183.3 229 50.7
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 3.7e-44 182.6 214 46.7
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.7e-44 182.6 201 52.2
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 1.1e-43 181.0 232 47.0
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.4e-43 179.9 182 54.4
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 3.1e-43 179.5 205 51.7
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 3.1e-43 179.5 205 51.7
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 4.9e-41 172.2 199 49.7
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 4.9e-41 172.2 210 47.6
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 1.1e-40 171.0 201 50.2
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 1.1e-40 171.0 201 48.3
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 1.4e-40 170.6 201 50.2
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 1.4e-40 170.6 201 50.2
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.9e-40 170.2 209 48.3
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 4.2e-40 169.1 202 48.0
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 4.2e-40 169.1 213 48.4
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 7.1e-40 168.3 210 47.6
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 9.3e-40 167.9 241 44.4
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 1.2e-39 167.5 198 49.5
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 2.7e-39 166.4 226 46.0
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 2.7e-39 166.4 226 46.0
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 3.5e-39 166.0 171 53.2
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 3.5e-39 166.0 171 53.2
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 4.6e-39 165.6 180 49.4
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 4.6e-39 165.6 171 54.4
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 2.3e-38 163.3 201 49.3
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 2.3e-38 163.3 197 48.2
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 3.0e-38 162.9 204 47.5
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 5.1e-38 162.2 156 51.9
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 6.7e-38 161.8 243 44.4
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 6.7e-38 161.8 173 52.6
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.1e-37 161.0 197 48.7
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.9e-37 160.2 208 48.1
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 2.5e-37 159.8 236 41.9
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 3.3e-37 159.5 210 46.2
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 4.3e-37 159.1 150 52.0
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 5.6e-37 158.7 255 42.7
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 7.4e-37 158.3 156 52.6
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.8e-36 156.4 234 42.3
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 4.8e-36 155.6 219 43.8
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 1.1e-35 154.5 166 53.6
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 1.4e-35 154.1 210 44.8
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 1.4e-35 154.1 212 44.3
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 1.8e-35 153.7 215 41.9
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 2.4e-35 153.3 155 51.0
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 4.0e-35 152.5 206 42.7
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 4.0e-35 152.5 182 46.7
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 5.3e-35 152.1 158 51.9
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 5.3e-35 152.1 158 51.9
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 5.3e-35 152.1 230 42.2
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 5.3e-35 152.1 205 44.4
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 5.3e-35 152.1 154 48.7
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 6.9e-35 151.8 187 46.5
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 9.0e-35 151.4 163 47.9
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 9.0e-35 151.4 216 42.6
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 9.0e-35 151.4 227 41.9
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 3.4e-34 149.4 204 44.6
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 3.4e-34 149.4 172 49.4
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 4.5e-34 149.1 199 42.7
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 4.5e-34 149.1 163 50.3
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 5.8e-34 148.7 172 48.3
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.6e-34 148.3 173 48.6
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.6e-34 148.3 172 48.8
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.0e-33 147.9 170 46.5
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 1.0e-33 147.9 227 41.9
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 1.3e-33 147.5 153 48.4
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 1.7e-33 147.1 172 45.3
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.7e-33 147.1 155 46.5
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.7e-33 147.1 188 44.7
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 2.9e-33 146.4 166 47.6
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 3.8e-33 146.0 257 40.9
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 4.9e-33 145.6 161 47.8
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 1.4e-32 144.1 158 44.9
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 1.9e-32 143.7 154 46.8
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 2.5e-32 143.3 194 43.8
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 9.3e-32 141.4 152 48.0
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 9.3e-32 141.4 166 44.0
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 2.1e-31 140.2 198 42.4
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.7e-31 139.8 169 46.2
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 6.0e-31 138.7 171 45.0
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 1.3e-30 137.5 160 46.9
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.3e-30 137.5 169 45.6
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 2.3e-30 136.7 158 44.3
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 3.0e-30 136.3 153 45.1
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.9e-30 136.0 165 44.2
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 5.1e-30 135.6 167 45.5
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 6.7e-30 135.2 198 39.9
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.1e-29 134.4 169 43.2
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 7.4e-29 131.7 150 43.3
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 6.3e-28 128.6 173 44.5
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 8.2e-28 128.3 219 36.1
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 8.2e-28 128.3 156 41.0
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 5.3e-27 125.6 188 41.0
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.5e-26 124.0 166 39.2
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 2.0e-26 123.6 183 39.9
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 2.6e-26 123.2 244 36.1
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.0e-25 121.3 166 38.6
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.7e-25 120.6 167 41.3
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 5.0e-25 119.0 168 40.5
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 5.0e-25 119.0 167 40.7
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 6.5e-25 118.6 150 43.3
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 1.1e-24 117.9 186 38.7
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 1.4e-24 117.5 158 43.7
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 2.5e-24 116.7 188 42.0
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 2.5e-24 116.7 167 40.1
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 5.5e-24 115.5 161 38.5
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 9.3e-24 114.8 207 32.4
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 1.6e-23 114.0 230 35.7
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 1.6e-23 114.0 241 33.2
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 4.6e-23 112.5 231 34.6
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 6.1e-23 112.1 116 48.3
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 6.1e-23 112.1 173 39.9
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 6.1e-23 112.1 174 36.2
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 7.9e-23 111.7 129 50.4
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 1.3e-22 110.9 171 39.2
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 1.3e-22 110.9 156 41.7
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.8e-22 110.5 191 34.0
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.8e-22 110.5 191 34.0
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 1.8e-22 110.5 169 39.1
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.3e-22 110.2 113 48.7
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 3.9e-22 109.4 153 41.8
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 6.7e-22 108.6 114 50.9
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 8.7e-22 108.2 114 50.9
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 1.9e-21 107.1 190 35.8
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 2.5e-21 106.7 151 42.4
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 2.5e-21 106.7 170 40.6
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 1.3e-20 104.4 161 37.3
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 1.7e-20 104.0 152 36.2
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 1.8e-19 100.5 163 38.0
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 3.1e-19 99.8 156 34.6
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 4.1e-19 99.4 165 37.6
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 1.5e-18 97.4 178 34.8
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.0e-18 97.1 159 36.5
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.9e-16 90.5 197 35.5
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 2.5e-16 90.1 175 32.6
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 3.2e-16 89.7 173 32.4
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.0e-14 83.2 127 41.7
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.5e-13 80.9 186 31.7
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 3.3e-13 79.7 186 31.2
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 5.7e-13 79.0 195 29.7
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.3e-12 77.8 97 42.3
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.3e-12 77.8 65 55.4
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.7e-12 77.4 170 31.2
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 1.1e-11 74.7 75 52.0
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 1.1e-11 74.7 88 42.0
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 2.0e-10 70.5 171 28.7
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 3.4e-10 69.7 79 40.5
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 7.2e-08 62.0 84 40.5
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 1.2e-07 61.2 82 34.1
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 4.7e-07 59.3 138 31.9


User provided reference genes

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