Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G05220 Arabidopsis thaliana HOM05D007683 ORTHO05D009703 4.9e-73 278.1 138 100.0
AL6G15060 Arabidopsis lyrata HOM05D007683 ORTHO05D009703 8.3e-65 250.8 138 90.6
CARHR208020 Cardamine hirsuta HOM05D007683 ORTHO05D009703 2.4e-56 222.6 136 79.4
Sp6g37610 Schrenkiella parvula HOM05D007683 ORTHO05D009703 4.3e-53 211.8 136 77.9
BcaB05g21726 Brassica carinata HOM05D007683 ORTHO05D009703 8.1e-52 207.6 134 76.1
Carub.0006s0415 Capsella rubella HOM05D007683 ORTHO05D009703 8.1e-52 207.6 136 78.7
Thhalv10014989m.g Eutrema salsugineum HOM05D007683 ORTHO05D009703 1.1e-51 207.2 135 78.5
BolC9t59911H Brassica oleracea HOM05D007683 ORTHO05D009703 1.6e-47 193.4 132 72.7
A10p30970 Brassica napus HOM05D007683 ORTHO05D009703 1.0e-46 190.7 134 73.1
BraA10t45142Z Brassica rapa HOM05D007683 ORTHO05D009703 1.0e-46 190.7 134 73.1
C09p71480 Brassica napus HOM05D007683 ORTHO05D009703 1.3e-46 190.3 134 71.6
Aa31LG11G6070 Aethionema arabicum HOM05D007683 ORTHO05D009703 2.3e-38 162.9 138 63.0
BcaC06g32231 Brassica carinata HOM05D007683 ORTHO05D009703 3.6e-36 155.6 132 62.1
BcaC03g13152 Brassica carinata HOM05D007683 ORTHO05D009703 1.3e-22 110.5 107 55.1
THA.LOC104823170 Tarenaya hassleriana HOM05D007683 ORTHO05D009703 2.2e-17 93.2 146 45.9
COL.COLO4_19470 Corchorus olitorius HOM05D007683 ORTHO05D009703 2.5e-16 89.7 118 49.2
QL08p065063 Quercus lobata HOM05D007683 ORTHO05D009703 9.3e-16 87.8 112 44.6
Cfa001197 Carpinus fangiana HOM05D007683 ORTHO05D009703 3.5e-15 85.9 114 48.2
C02p02220 Brassica napus HOM05D007683 ORTHO05D009703 1.3e-14 84.0 39 92.3
PGR044G1007 Punica granatum HOM05D007683 ORTHO05D009703 1.3e-14 84.0 129 40.3
ClCG07G005260 Citrullus lanatus HOM05D007683 ORTHO05D009703 2.3e-14 83.2 128 42.2
Haze_17368 Corylus avellana HOM05D007683 ORTHO05D009703 2.3e-14 83.2 113 48.7
Sed0023040 Sechium edule HOM05D007683 ORTHO05D009703 2.3e-14 83.2 88 50.0
Duzib106G0215 Durio zibethinus HOM05D007683 ORTHO05D009703 5.1e-14 82.0 130 46.2
Cc02_g05230 Coffea canephora HOM05D007683 ORTHO05D009703 2.5e-13 79.7 143 35.7
CsaV3_5G011110 Cucumis sativus L. HOM05D007683 ORTHO05D009703 2.5e-13 79.7 89 49.4
MD01G1169200 Malus domestica HOM05D007683 ORTHO05D009703 2.5e-13 79.7 97 46.4
TAR633G1265 Trochodendron aralioides HOM05D007683 ORTHO05D009703 3.3e-13 79.3 89 48.3
Eucgr.J00104 Eucalyptus grandis HOM05D007683 ORTHO05D009703 4.3e-13 79.0 111 41.4
Medtr5g067740 Medicago truncatula HOM05D007683 ORTHO05D009703 4.3e-13 79.0 62 61.3
Sed0015955 Sechium edule HOM05D007683 ORTHO05D009703 5.7e-13 78.6 93 50.5
CANSAT56G2075 Cannabis sativa HOM05D007683 ORTHO05D009703 9.7e-13 77.8 53 67.9
MELO3C020169.2 Cucumis melo HOM05D007683 ORTHO05D009703 9.7e-13 77.8 89 47.2
Manes.10G003157 Manihot esculenta HOM05D007683 ORTHO05D009703 9.7e-13 77.8 105 45.7
Cpa.g.sc19.42 Carica papaya HOM05D007683 ORTHO05D009703 1.3e-12 77.4 115 39.1
Ciclev10033031m.g Citrus clementina HOM05D007683 ORTHO05D009703 1.3e-12 77.4 89 51.7
Nitab4.5_0006356g0030 Nicotiana tabacum HOM05D007683 ORTHO05D009703 1.3e-12 77.4 64 57.8
DCAR_014661 Daucus carota HOM05D007683 ORTHO05D009703 2.2e-12 76.6 89 44.9
SGA_v2.0_scaffold60G20879 Striga asiatica HOM05D007683 ORTHO05D009703 2.2e-12 76.6 135 42.2
Thecc.10G184800 Theobroma cacao HOM05D007683 ORTHO05D009703 2.8e-12 76.3 86 53.5
Dinv21856 Davidia involucrata HOM05D004933 ORTHO05D005465 3.7e-12 75.9 65 58.5
Prupe.2G265400 Prunus persica HOM05D007683 ORTHO05D009703 4.8e-12 75.5 154 36.4
Solyc03g095700.1 Solanum lycopersicum HOM05D007683 ORTHO05D009703 4.8e-12 75.5 95 45.3
Gohir.D06G187100 Gossypium hirsutum HOM05D007683 ORTHO05D009703 1.1e-11 74.3 82 48.8
Gorai.010G219400 Gossypium raimondii HOM05D007683 ORTHO05D009703 1.1e-11 74.3 82 48.8
TPR.G7683 Trifolium pratense HOM05D007683 ORTHO05D009703 1.1e-11 74.3 92 46.7
MSTRG.8877 Avicennia marina HOM05D007683 ORTHO05D009703 1.4e-11 73.9 106 42.5
Gorai.011G206600 Gossypium raimondii HOM05D007683 ORTHO05D009703 1.4e-11 73.9 101 46.5
Psat2g062760 Pisum sativum HOM05D007683 ORTHO05D009703 1.4e-11 73.9 64 57.8
Atru.chr12.196 Acer truncatum HOM05D007683 ORTHO05D009703 1.8e-11 73.6 110 43.6
Gohir.A10G177800 Gossypium hirsutum HOM05D007683 ORTHO05D009703 1.8e-11 73.6 94 48.9
FAN03G1207 Fragaria x ananassa HOM05D007683 ORTHO05D009703 2.4e-11 73.2 129 39.5
FAN01G0748 Fragaria x ananassa HOM05D007683 ORTHO05D009703 3.1e-11 72.8 81 51.9
Nitab4.5_0000171g0240 Nicotiana tabacum HOM05D007683 ORTHO05D009703 4.1e-11 72.4 53 64.2
Potri.013G090200 Populus trichocarpa HOM05D007683 ORTHO05D009703 4.1e-11 72.4 145 38.6
Rhsim03G0153400 Rhododendron simsii HOM05D007683 ORTHO05D009703 4.1e-11 72.4 55 60.0
Ah.12g064430 Amaranthus hybridus HOM05D007683 ORTHO05D009703 6.9e-11 71.6 108 40.7
FvH4_7g26070 Fragaria vesca HOM05D007683 ORTHO05D009703 6.9e-11 71.6 81 50.6
Glyma.14G186400 Glycine max HOM05D007683 ORTHO05D009703 6.9e-11 71.6 77 50.6
VMungo1309G1531 Vigna mungo HOM05D007683 ORTHO05D009703 6.9e-11 71.6 50 64.0
LjContig00408g0002016 Lotus japonicus HOM05D007683 ORTHO05D009703 9.0e-11 71.2 84 50.0
Phvul.009G042800 Phaseolus vulgaris HOM05D007683 ORTHO05D009703 9.0e-11 71.2 50 66.0
Glyma.06G141600 Glycine max HOM05D007683 ORTHO05D009703 1.2e-10 70.9 63 54.0
Gohir.D10G184400 Gossypium hirsutum HOM05D007683 ORTHO05D009703 1.2e-10 70.9 94 46.8
Lalb_Chr11g0067711 Lupinus albus HOM05D007683 ORTHO05D009703 1.2e-10 70.9 46 67.4
Oeu008103.1 Olea europaea HOM05D007683 ORTHO05D009703 1.5e-10 70.5 45 71.1
Peaxi162Scf00073g10232 Petunia axillaris HOM05D007683 ORTHO05D009703 1.5e-10 70.5 45 68.9
RcHm_v2.0_Chr1g0372481 Rosa chinensis HOM05D007683 ORTHO05D009703 1.5e-10 70.5 127 37.8
Ah.11g042460 Amaranthus hybridus HOM05D007683 ORTHO05D009703 2.0e-10 70.1 42 76.2
Hma1.2p1_1805F.1_g303190 Hydrangea macrophylla HOM05D007683 ORTHO05D009703 2.0e-10 70.1 56 60.7
Migut.F00568 Erythranthe guttata HOM05D007683 ORTHO05D009703 2.6e-10 69.7 98 41.8
Sopen03g025620 Solanum pennellii HOM05D007683 ORTHO05D009703 2.6e-10 69.7 94 43.6
Phvul.008G186200 Phaseolus vulgaris HOM05D007683 ORTHO05D009703 3.4e-10 69.3 77 48.1
TWI73G0272 Tripterygium wilfordii HOM05D007683 ORTHO05D009703 3.4e-10 69.3 101 41.6
MD07G1235100 Malus domestica HOM05D007683 ORTHO05D009703 4.5e-10 68.9 53 60.4
Nn2g10270 Nelumbo nucifera HOM05D007683 ORTHO05D009703 4.5e-10 68.9 52 61.5
PGSC0003DMG400020609 Solanum tuberosum HOM05D007683 ORTHO05D009703 5.9e-10 68.6 45 68.9
Glyma.02G219100 Glycine max HOM05D007683 ORTHO05D009703 7.7e-10 68.2 85 47.1
Hma1.2p1_0264F.1_g105970 Hydrangea macrophylla HOM05D007683 ORTHO05D009703 7.7e-10 68.2 45 66.7
VMungo0647G1507 Vigna mungo HOM05D007683 ORTHO05D009703 1.0e-09 67.8 67 52.2
Gohir.A06G180150 Gossypium hirsutum HOM05D007683 ORTHO05D009703 1.3e-09 67.4 47 66.0
Lj1g0018746 Lotus japonicus HOM05D007683 ORTHO05D009703 2.9e-09 66.2 46 65.2
Sabra13G0070100 Salix brachista HOM05D007683 ORTHO05D009703 5.0e-09 65.5 61 55.7
Lj6g0012778 Lotus japonicus HOM05D007683 ORTHO05D009703 2.5e-08 63.2 45 62.2
TWI09G1439 Tripterygium wilfordii HOM05D007683 ORTHO05D009703 5.5e-08 62.0 43 67.4
MBI15_g36064_MAGBIO Magnolia biondii HOM05D007683 ORTHO05D009703 3.6e-07 59.3 86 38.4
BraA02t04838Z Brassica rapa HOM05D050191 ORTHO05D043219 4.6e-07 58.9 41 75.6
ATR1127G105 Amborella trichopoda HOM05D007683 ORTHO05D009703 7.9e-07 58.2 49 57.1
Zm00001eb015980 Zea mays HOM05D007683 ORTHO05D009703 3.0e-06 56.2 45 55.6
CDE07G1521 Ceratophyllum demersum HOM05D006969 ORTHO05D008826 6.7e-06 55.1 120 33.3
Lsat_1_v5_gn_2_126821 Lactuca sativa HOM05D007683 ORTHO05D009703 6.7e-06 55.1 86 37.2


User provided reference genes

Program Settings