Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G05120 Arabidopsis thaliana HOM05D012504 ORTHO05D012796 2.0e-91 339.3 165 100.0
AL6G14950 Arabidopsis lyrata HOM05D012504 ORTHO05D012796 5.2e-60 235.0 167 72.5
Carub.0006s0405 Capsella rubella HOM05D012504 ORTHO05D012796 4.4e-35 152.1 169 51.5
Thhalv10015305m.g Eutrema salsugineum HOM05D012504 ORTHO05D012796 1.2e-32 144.1 167 51.5
Sp6g37720 Schrenkiella parvula HOM05D012504 ORTHO05D012796 2.7e-32 142.9 171 46.8
C03p02470 Brassica napus HOM05D012504 ORTHO05D012796 2.9e-26 122.9 165 42.4
BolC3t12798H Brassica oleracea HOM05D012504 ORTHO05D012796 2.9e-26 122.9 165 42.4
BcaC06g32221 Brassica carinata HOM05D012504 ORTHO05D012796 1.1e-22 110.9 172 41.9
A03p02160 Brassica napus HOM05D012504 ORTHO05D012796 2.4e-20 103.2 113 47.8
BraA03t09580Z Brassica rapa HOM05D012504 ORTHO05D012796 3.1e-20 102.8 113 47.8
CARHR208150 Cardamine hirsuta HOM05D012504 ORTHO05D012796 2.0e-19 100.1 172 41.3
BolC9t59920H Brassica oleracea HOM05D012504 ORTHO05D012796 7.4e-14 81.6 78 53.8
C09p71580 Brassica napus HOM05D012504 ORTHO05D012796 1.6e-13 80.5 78 53.8
BraA10t45179Z Brassica rapa HOM05D012504 ORTHO05D012796 1.6e-13 80.5 78 53.8
THA.LOC109117277 Tarenaya hassleriana HOM05D000333 ORTHO05D000627 6.1e-08 62.0 150 31.3
CiPaw.07G228300 Carya illinoinensis HOM05D000333 ORTHO05D000190 1.3e-07 60.8 83 36.1
Duzib150G0172 Durio zibethinus HOM05D000333 ORTHO05D000190 3.9e-07 59.3 69 37.7
Carub.0006s1220 Capsella rubella HOM05D000333 ORTHO05D000190 5.1e-07 58.9 71 42.3
Lj6P800T20 Lonicera japonica HOM05D001250 ORTHO05D000627 6.7e-07 58.5 95 38.9
Potri.016G028100 Populus trichocarpa HOM05D000333 ORTHO05D000190 6.7e-07 58.5 66 43.9
CARHR188330 Cardamine hirsuta HOM05D000333 ORTHO05D000190 8.7e-07 58.2 63 42.9
HanXRQChr06g0163951 Helianthus annuus HOM05D000333 ORTHO05D000190 8.7e-07 58.2 73 39.7
Manes.03G010600 Manihot esculenta HOM05D000333 ORTHO05D000190 1.1e-06 57.8 88 37.5
THA.LOC104824488 Tarenaya hassleriana HOM05D003047 ORTHO05D000627 1.1e-06 57.8 97 39.2
MBI15_g16943_MAGBIO Magnolia biondii HOM05D000333 ORTHO05D000190 1.5e-06 57.4 63 47.6
QL02p019815 Quercus lobata HOM05D000333 ORTHO05D000190 1.5e-06 57.4 79 41.8
arahy.Tifrunner.gnm1.ann1.8D9I3N Arachis hypogaea HOM05D000333 ORTHO05D000190 2.5e-06 56.6 57 45.6
arahy.Tifrunner.gnm1.ann1.8JQN9V Arachis hypogaea HOM05D000333 ORTHO05D000190 2.5e-06 56.6 57 45.6
Glyma.11G214300 Glycine max HOM05D000333 ORTHO05D000190 2.5e-06 56.6 58 48.3
arahy.Tifrunner.gnm1.ann1.XGF38B Arachis hypogaea HOM05D000333 ORTHO05D000190 3.3e-06 56.2 48 47.9
FAN27G0537 Fragaria x ananassa HOM05D000333 ORTHO05D000190 3.3e-06 56.2 76 39.5
Manes.16G127300 Manihot esculenta HOM05D000333 ORTHO05D000190 3.3e-06 56.2 79 35.4
Oeu002666.1 Olea europaea HOM05D000333 ORTHO05D000190 3.3e-06 56.2 125 30.4
MSTRG.4688 Avicennia marina HOM05D000333 ORTHO05D000190 4.3e-06 55.8 79 35.4
CiPaw.08G007300 Carya illinoinensis HOM05D000333 ORTHO05D000190 4.3e-06 55.8 84 36.9
CsaV3_3G040020 Cucumis sativus L. HOM05D000333 ORTHO05D000190 4.3e-06 55.8 39 56.4
ECA246G0333 Erigeron canadensis HOM05D000333 ORTHO05D000190 4.3e-06 55.8 100 37.0
FvH4_2g40850 Fragaria vesca HOM05D000333 ORTHO05D000190 4.3e-06 55.8 63 42.9
FAN15G1353 Fragaria x ananassa HOM05D000333 ORTHO05D000190 4.3e-06 55.8 76 39.5
Sabra06G0020900 Salix brachista HOM05D000333 ORTHO05D000190 4.3e-06 55.8 58 51.7
Thecc.09G017800 Theobroma cacao HOM05D000333 ORTHO05D000190 4.3e-06 55.8 89 36.0
ATR1149G134 Amborella trichopoda HOM05D001250 ORTHO05D000627 5.7e-06 55.5 89 40.4
Duzib187G0847 Durio zibethinus HOM05D000333 ORTHO05D000190 5.7e-06 55.5 69 37.7
FAN20G1192 Fragaria x ananassa HOM05D000333 ORTHO05D000190 5.7e-06 55.5 63 42.9
FAN20G3054 Fragaria x ananassa HOM05D000333 ORTHO05D000190 5.7e-06 55.5 63 42.9
Hma1.2p1_0230F.1_g097270 Hydrangea macrophylla HOM05D000333 ORTHO05D000190 5.7e-06 55.5 83 36.1
Zm00001eb100360 Zea mays HOM05D003047 ORTHO05D000627 5.7e-06 55.5 140 32.1
Aa31LG11G9630 Aethionema arabicum HOM05D008496 ORTHO05D010729 7.4e-06 55.1 72 45.8
A03p23480 Brassica napus HOM05D003047 ORTHO05D000627 7.4e-06 55.1 65 44.6
BraA02t04887Z Brassica rapa HOM05D003047 ORTHO05D000627 7.4e-06 55.1 65 43.1
BraA03t11564Z Brassica rapa HOM05D003047 ORTHO05D000627 7.4e-06 55.1 65 44.6
CARHR183000 Cardamine hirsuta HOM05D008496 ORTHO05D010729 7.4e-06 55.1 37 62.2
DCAR_009914 Daucus carota HOM05D000333 ORTHO05D000190 7.4e-06 55.1 59 42.4
Lalb_Chr11g0063541 Lupinus albus HOM05D000333 ORTHO05D000190 7.4e-06 55.1 75 38.7
MBI13_g29637_MAGBIO Magnolia biondii HOM05D003047 ORTHO05D000627 7.4e-06 55.1 104 33.7
TWI77G0366 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 7.4e-06 55.1 85 34.1
TAR374G0543 Trochodendron aralioides HOM05D001250 ORTHO05D000627 7.4e-06 55.1 170 31.8
BraA08t34619Z Brassica rapa HOM05D000333 ORTHO05D000190 9.7e-06 54.7 100 36.0
CDE05G0105 Ceratophyllum demersum HOM05D000546 ORTHO05D000398 9.7e-06 54.7 55 47.3
AUR62012460 Chenopodium quinoa HOM05D000333 ORTHO05D000190 9.7e-06 54.7 88 37.5
Ciclev10026234m.g Citrus clementina HOM05D000333 ORTHO05D000190 9.7e-06 54.7 87 36.8
Duzib168G1567 Durio zibethinus HOM05D000333 ORTHO05D000190 9.7e-06 54.7 69 37.7
Migut.N02256 Erythranthe guttata HOM05D000333 ORTHO05D000190 9.7e-06 54.7 60 46.7
Glyma.05G139000 Glycine max HOM05D000333 ORTHO05D000190 9.7e-06 54.7 57 43.9
Phvul.002G182400 Phaseolus vulgaris HOM05D000333 ORTHO05D000190 9.7e-06 54.7 57 43.9
Prupe.3G143800 Prunus persica HOM05D001250 ORTHO05D000627 9.7e-06 54.7 96 34.4
Sc19g0007940 Simmondsia chinensis HOM05D039714 ORTHO05D000190 9.7e-06 54.7 73 43.8


User provided reference genes

Program Settings