Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 7.5e-243 843.6 472 100.0
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.2e-226 788.9 477 92.9
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 4.1e-217 758.1 467 90.8
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.1e-206 723.4 472 81.8
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 7.3e-198 694.1 463 81.2
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 4.3e-190 668.3 464 76.5
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 9.6e-182 640.6 464 75.2
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 3.7e-181 638.6 464 76.3
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 8.2e-181 637.5 464 75.0
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 5.3e-180 634.8 464 75.4
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.5e-171 606.7 467 78.2
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.6e-168 595.1 457 69.8
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.8e-165 585.9 458 67.9
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.7e-157 558.9 459 66.2
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.4e-156 557.0 459 66.0
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 2.4e-156 556.2 459 66.4
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.7e-154 550.1 458 65.9
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 8.5e-154 547.7 460 65.4
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 8.5e-154 547.7 458 64.6
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 2.8e-149 532.7 458 63.3
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.1e-148 530.8 460 63.0
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.4e-148 530.4 465 62.4
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 7.7e-147 524.6 457 63.9
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 6.5e-146 521.5 419 71.6
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 4.7e-144 515.4 459 62.7
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 8.9e-127 458.0 458 58.1
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 8.0e-120 434.9 480 53.8
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.2e-118 431.0 465 55.9
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 2.6e-118 429.9 337 72.1
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.3e-114 417.5 477 53.0
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 6.6e-114 415.2 474 52.1
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 6.8e-111 405.2 469 50.7
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 8.9e-111 404.8 476 49.8
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 1.2e-110 404.4 474 49.8
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.2e-109 400.2 476 50.2
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 3.7e-109 399.4 463 49.9
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.4e-108 396.7 471 48.6
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 7.0e-108 395.2 465 51.6
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 4.6e-107 392.5 471 50.1
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 7.8e-107 391.7 484 47.9
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 1.0e-106 391.3 479 48.4
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 2.3e-106 390.2 479 48.2
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 3.0e-106 389.8 465 48.2
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 3.9e-106 389.4 465 50.8
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 3.9e-106 389.4 486 47.3
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.6e-106 388.7 484 48.1
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 8.6e-106 388.3 470 50.0
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.1e-105 387.9 475 48.2
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.1e-105 387.9 475 50.5
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.5e-105 386.7 474 49.4
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 2.5e-105 386.7 477 47.4
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 2.5e-105 386.7 476 50.4
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 3.3e-105 386.3 484 47.7
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 7.3e-105 385.2 472 46.8
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 9.5e-105 384.8 482 47.9
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 1.2e-104 384.4 467 49.9
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.6e-104 384.0 470 47.2
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.6e-104 384.0 470 47.2
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 1.6e-104 384.0 485 48.5
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 3.6e-104 382.9 479 48.9
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 3.6e-104 382.9 475 50.1
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 6.2e-104 382.1 479 48.6
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 6.2e-104 382.1 480 47.7
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 5.2e-103 379.0 488 49.2
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.2e-102 377.9 477 49.1
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 1.5e-102 377.5 465 52.3
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.4e-102 376.3 475 47.4
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 9.9e-102 374.8 475 47.2
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 1.3e-101 374.4 476 48.9
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 1.7e-101 374.0 474 51.3
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 2.4e-100 370.2 473 49.0
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 5.4e-100 369.0 471 48.4
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 7.1e-100 368.6 462 47.0
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 2.7e-99 366.7 476 48.3
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 4.6e-99 365.9 471 47.3
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.0e-99 365.5 466 47.2
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 7.8e-99 365.2 473 45.5
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.0e-98 364.8 474 46.2
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.0e-98 364.8 482 47.5
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 3.0e-98 363.2 466 47.4
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.1e-97 361.3 470 45.1
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 7.3e-97 358.6 472 47.5
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 1.6e-96 357.5 467 45.8
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 8.1e-96 355.1 466 46.6
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 6.8e-95 352.1 509 43.2
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 3.4e-94 349.7 481 45.7
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 4.9e-93 345.9 477 44.9
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 6.4e-93 345.5 435 50.8
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 8.4e-93 345.1 469 45.8
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.4e-92 344.4 466 46.8
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 1.0e-90 338.2 600 39.0
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 3.9e-90 336.3 469 45.0
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.1e-89 334.7 478 45.6
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.9e-89 334.0 474 44.9
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 5.6e-89 332.4 486 44.0
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.6e-88 330.9 528 41.7
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 6.2e-88 328.9 499 43.3
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.4e-87 327.8 468 43.4
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.8e-87 327.4 467 45.0
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 1.2e-86 324.7 495 41.4
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 2.6e-86 323.6 484 42.6
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 2.6e-86 323.6 461 45.8
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 5.8e-86 322.4 473 43.6
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 9.9e-86 321.6 468 44.2
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 2.2e-85 320.5 476 44.1
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.9e-84 317.4 494 43.3
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 2.1e-83 313.9 474 42.6
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.7e-82 310.8 463 42.3
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 6.6e-82 308.9 345 49.9
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.1e-81 308.1 403 43.7
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.1e-81 308.1 456 41.9
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.1e-79 301.6 480 42.9
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 3.1e-79 300.1 237 62.9
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 3.1e-79 300.1 302 55.0
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 1.5e-78 297.7 472 41.3
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 2.0e-78 297.4 534 38.4
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 9.9e-78 295.0 470 41.3
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.7e-77 294.3 466 41.8
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.7e-77 294.3 421 43.5
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 4.9e-77 292.7 459 40.7
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 1.9e-76 290.8 469 42.4
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 1.2e-75 288.1 469 40.9
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 6.7e-74 282.3 469 40.7
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 6.2e-72 275.8 461 39.9
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 3.1e-71 273.5 479 40.9
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 7.6e-70 268.9 420 42.1
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 3.8e-69 266.5 429 41.5
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 8.4e-69 265.4 461 37.7
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 7.1e-68 262.3 378 44.4
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.3e-66 258.1 367 42.2
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.5e-65 254.6 369 40.9
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 1.6e-64 251.1 418 38.5
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 6.2e-64 249.2 294 46.9
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.2e-64 249.2 452 39.8
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 2.0e-62 244.2 380 43.9
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 7.6e-62 242.3 375 39.7
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 1.0e-61 241.9 215 59.5
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.9e-61 240.4 387 43.7
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 2.5e-60 237.3 250 50.0
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 3.5e-59 233.4 365 40.5
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 2.3e-58 230.7 366 38.5
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 6.7e-58 229.2 372 41.1
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 1.9e-57 227.6 254 52.0
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 2.5e-57 227.3 355 39.2
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.3e-56 224.9 480 35.6
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.5e-54 216.5 313 40.6
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.5e-54 216.5 313 40.6
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.2e-51 208.4 313 41.5
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 2.7e-51 207.2 317 38.2
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.2e-48 197.6 314 36.9
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 6.9e-47 192.6 243 42.4
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 9.1e-47 192.2 404 34.7
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 1.2e-46 191.8 139 69.1
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.8e-45 186.8 411 34.1
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 3.8e-45 186.8 245 43.3
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 1.9e-44 184.5 193 49.7
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 4.7e-43 179.9 243 45.7
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 3.0e-42 177.2 220 47.3
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 3.9e-42 176.8 212 47.6
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 5.1e-42 176.4 204 48.0
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 1.1e-41 175.3 395 34.4
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 1.3e-37 161.8 402 31.1
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 3.6e-35 153.7 252 42.5
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 5.2e-34 149.8 368 33.7
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 6.3e-32 142.9 97 74.2
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.8e-31 141.4 135 52.6
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 2.2e-29 134.4 205 42.0
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 3.6e-27 127.1 164 44.5
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 2.0e-22 111.3 105 54.3
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.2e-21 107.8 71 69.0
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 2.9e-21 107.5 192 37.0
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.8e-21 107.1 202 35.1
BcaC07g36872 Brassica carinata HOM05D003737 ORTHO05D004640 8.5e-21 105.9 215 37.2
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.9e-20 104.8 82 64.6
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.2e-20 104.0 84 65.5
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 3.6e-19 100.5 203 35.0
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 1.5e-12 78.6 55 67.3
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 3.3e-12 77.4 216 32.9
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 8.9e-10 69.3 52 63.5


User provided reference genes

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