Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G04750 Arabidopsis thaliana HOM05D012863 ORTHO05D008409 3.2e-36 154.8 95 100.0
Carub.0006s0364 Capsella rubella HOM05D012863 ORTHO05D008409 4.0e-26 121.3 95 74.7
AL6G14410 Arabidopsis lyrata HOM05D012863 ORTHO05D008409 1.2e-25 119.8 95 73.7
Sp6g38070 Schrenkiella parvula HOM05D012863 ORTHO05D008409 1.5e-25 119.4 95 73.7
CARHR208540 Cardamine hirsuta HOM05D012863 ORTHO05D008409 6.3e-24 114.0 95 69.5
BolC3t12770H Brassica oleracea HOM05D012863 ORTHO05D008409 2.5e-20 102.1 95 65.3
A03p01810 Brassica napus HOM05D012863 ORTHO05D008409 9.4e-20 100.1 95 64.2
BraA03t09553Z Brassica rapa HOM05D012863 ORTHO05D008409 9.4e-20 100.1 95 64.2
C03p02190 Brassica napus HOM05D012863 ORTHO05D008409 2.6e-17 92.0 87 64.4
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 2.6e-17 92.0 94 60.6
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 5.7e-17 90.9 94 61.7
Aa31LG11G5600 Aethionema arabicum HOM05D012863 ORTHO05D008409 2.2e-16 89.0 111 51.4
BcaB01g05901 Brassica carinata HOM05D012863 ORTHO05D008409 5.5e-12 74.3 60 71.7
Thecc.10G114000 Theobroma cacao HOM05D007506 ORTHO05D008409 1.8e-10 69.3 66 63.6
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 5.2e-10 67.8 66 63.6
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 1.5e-09 66.2 57 66.7
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 3.4e-09 65.1 48 72.9
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 5.7e-09 64.3 67 61.2
Potri.008G016801 Populus trichocarpa HOM05D007506 ORTHO05D008409 2.2e-08 62.4 67 56.7
Sabra08G0010500 Salix brachista HOM05D007506 ORTHO05D008409 2.2e-08 62.4 68 55.9
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 2.8e-08 62.0 65 58.5
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 6.3e-08 60.8 49 69.4
Cpa.g.sc54.9 Carica papaya HOM05D007506 ORTHO05D008409 6.3e-08 60.8 61 62.3
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 8.3e-08 60.5 77 53.2
SGA_v2.0_scaffold62G21316 Striga asiatica HOM05D007506 ORTHO05D008409 1.1e-07 60.1 36 80.6
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 1.4e-07 59.7 48 68.8
SalBow3G3829 Salvia bowleyana HOM05D007506 ORTHO05D008409 1.4e-07 59.7 35 80.0
GSVIVG01010679001 Vitis vinifera HOM05D007506 ORTHO05D008409 1.4e-07 59.7 38 81.6
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 1.8e-07 59.3 64 56.2
Phvul.007G023500 Phaseolus vulgaris HOM05D007506 ORTHO05D008409 1.8e-07 59.3 73 50.7
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 3.1e-07 58.5 67 55.2
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 5.4e-07 57.8 34 85.3
CAN.G1373.1 Capsicum annuum HOM05D007506 ORTHO05D008409 7.0e-07 57.4 44 65.9
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 9.2e-07 57.0 67 65.7
Hund06790 Selenicereus undatus HOM05D007506 ORTHO05D008409 9.2e-07 57.0 66 62.1
Solyc11g006750.1 Solanum lycopersicum HOM05D007506 ORTHO05D008409 9.2e-07 57.0 56 58.9
Sopen11g002680 Solanum pennellii HOM05D007506 ORTHO05D008409 9.2e-07 57.0 56 58.9
Lalb_Chr06g0166331 Lupinus albus HOM05D007506 ORTHO05D008409 1.2e-06 56.6 40 70.0
Peaxi162Scf00519g00621 Petunia axillaris HOM05D007506 ORTHO05D008409 1.2e-06 56.6 45 64.4
Sc20g0001140 Simmondsia chinensis HOM05D007506 ORTHO05D008409 1.2e-06 56.6 64 54.7
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 1.6e-06 56.2 64 54.7
Lalb_Chr02g0146201 Lupinus albus HOM05D007506 ORTHO05D008409 1.6e-06 56.2 46 67.4
Nitab4.5_0010633g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 2.0e-06 55.8 63 54.0
PGSC0003DMG400023979 Solanum tuberosum HOM05D007506 ORTHO05D008409 2.0e-06 55.8 53 60.4
TAR633G2594 Trochodendron aralioides HOM05D007506 ORTHO05D008409 2.0e-06 55.8 57 56.1
EL10Ac4g08692 Beta vulgaris HOM05D007506 ORTHO05D008409 2.7e-06 55.5 69 53.6
CANSAT56G4328 Cannabis sativa HOM05D007506 ORTHO05D008409 2.7e-06 55.5 52 59.6
Glyma.10G277900 Glycine max HOM05D007506 ORTHO05D008409 2.7e-06 55.5 63 55.6
Lj5g0016646 Lotus japonicus HOM05D007506 ORTHO05D008409 2.7e-06 55.5 67 65.7
Manes.10G062500 Manihot esculenta HOM05D007506 ORTHO05D008409 2.7e-06 55.5 67 53.7
PSO801G0534 Papaver somniferum HOM05D007506 ORTHO05D008409 2.7e-06 55.5 75 46.7
unitig_899.g14468 Utricularia gibba HOM05D007506 ORTHO05D008409 2.7e-06 55.5 31 87.1
Nitab4.5_0005214g0030 Nicotiana tabacum HOM05D007506 ORTHO05D008409 3.5e-06 55.1 44 68.2
PSO339G4482 Papaver somniferum HOM05D007506 ORTHO05D008409 3.5e-06 55.1 75 46.7
Peaxi162Scf00125g00216 Petunia axillaris HOM05D007506 ORTHO05D008409 3.5e-06 55.1 45 66.7
QL04p046828 Quercus lobata HOM05D007506 ORTHO05D008409 3.5e-06 55.1 89 56.2
TWI38G1985 Tripterygium wilfordii HOM05D007506 ORTHO05D008409 3.5e-06 55.1 61 55.7


User provided reference genes

Program Settings