Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1654.4 834 100.0
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1588.9 834 94.1
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1488.0 834 89.1
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1438.3 839 85.6
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1435.2 835 84.9
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1416.7 837 83.6
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1406.7 838 83.3
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1406.7 838 83.3
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1384.4 836 82.7
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1381.3 836 82.4
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1377.1 837 82.2
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1310.0 761 84.9
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1295.8 842 76.4
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1295.8 845 76.2
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1288.9 850 75.9
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1288.5 849 76.0
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1282.7 845 76.3
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1270.8 854 73.9
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1249.6 845 73.6
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1241.5 855 72.9
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1237.2 850 72.9
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1237.2 850 72.9
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1207.6 828 73.9
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1179.5 837 71.7
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1165.6 854 67.4
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1151.7 850 66.5
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1142.9 851 66.0
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1132.1 652 85.9
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1131.3 847 66.0
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1130.9 851 65.8
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1127.9 864 65.5
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1126.7 860 65.9
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1125.2 859 65.8
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1124.0 842 66.4
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1119.0 862 65.7
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1115.9 844 66.4
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1111.3 861 65.4
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1107.8 853 64.5
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1107.4 853 64.6
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1106.7 853 64.4
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1103.2 855 65.6
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1099.7 855 65.5
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1098.6 855 65.5
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1095.5 851 64.9
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1092.8 713 75.9
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1092.4 849 64.9
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1089.7 845 65.0
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1087.0 847 65.1
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1086.6 810 66.9
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1086.2 851 63.6
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1086.2 852 64.8
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1085.1 844 64.6
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1084.7 883 63.4
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1084.7 842 64.5
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1079.3 846 64.5
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1078.5 872 63.5
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1077.0 847 63.9
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 5.7e-312 1074.3 833 64.1
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 1.7e-311 1072.4 853 63.3
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 2.9e-311 1071.6 857 63.6
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 5.6e-310 1067.4 849 63.6
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 5.6e-310 1067.4 843 63.9
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 7.4e-310 1067.0 846 64.1
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 3.1e-308 1061.6 851 63.8
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 3.4e-307 1058.1 855 62.9
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 3.4e-307 1058.1 832 64.2
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 2.9e-306 1055.0 839 63.1
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 3.8e-306 1054.7 878 61.4
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 1.1e-305 1053.1 851 62.5
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 1.9e-305 1052.4 846 62.6
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 2.5e-305 1052.0 829 63.8
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 4.2e-305 1051.2 847 61.7
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 1.6e-304 1049.3 855 63.3
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 1.6e-304 1049.3 864 61.1
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.8e-303 1045.8 856 61.9
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 2.5e-302 1042.0 850 61.9
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 7.4e-302 1040.4 846 63.2
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 6.2e-301 1037.3 769 67.2
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 1.3e-298 1029.6 855 62.1
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 2.9e-298 1028.5 846 62.5
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 1.9e-297 1025.8 859 62.4
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 4.2e-297 1024.6 836 61.1
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 1.2e-296 1023.1 766 66.1
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 4.6e-296 1021.1 852 61.2
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 4.6e-296 1021.1 756 67.9
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 6.0e-296 1020.8 834 61.2
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 1.0e-295 1020.0 919 58.2
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 1.3e-295 1019.6 916 58.5
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 2.3e-295 1018.8 964 56.4
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 3.9e-295 1018.1 764 66.6
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 1.1e-294 1016.5 861 59.9
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 1.5e-294 1016.1 851 60.9
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 4.3e-294 1014.6 834 61.0
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 4.3e-294 1014.6 855 60.6
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 3.4e-291 1005.0 829 61.3
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 1.3e-290 1003.0 731 68.4
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 2.5e-289 998.8 925 57.3
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 1.7e-285 986.1 860 60.1
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 1.8e-284 982.6 836 59.2
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 9.1e-284 980.3 697 69.3
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 3.8e-282 974.9 944 55.5
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 2.3e-279 965.7 844 59.2
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 8.2e-277 957.2 1013 52.6
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 4.1e-276 954.9 832 60.1
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 1.2e-275 953.4 820 59.4
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 5.5e-273 944.5 738 63.8
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 2.2e-269 932.6 866 55.9
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 2.4e-260 902.5 719 63.3
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 7.2e-257 891.0 845 54.9
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 4.7e-248 861.7 793 56.6
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 6.1e-248 861.3 604 71.4
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 4.5e-243 845.1 848 53.2
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.0e-242 844.0 847 53.6
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.1e-233 813.9 744 57.5
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.5e-225 786.2 474 81.6
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 6.8e-223 778.1 535 72.7
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.9e-221 772.7 450 84.0
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 2.2e-213 746.5 857 47.6
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 1.1e-207 727.6 842 49.3
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 6.4e-197 691.8 460 77.0
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 4.6e-195 685.6 771 50.7
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 4.0e-191 672.5 873 44.3
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 1.7e-189 667.2 532 62.4
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 2.2e-189 666.8 864 43.1
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 4.9e-189 665.6 863 44.4
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 2.8e-160 570.1 538 55.8
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 4.2e-156 556.2 384 71.9
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 3.1e-151 540.0 754 42.6
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.7e-149 534.3 492 59.8
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.7e-144 517.7 798 40.4
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.9e-141 506.9 376 68.4
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 5.0e-141 506.1 467 56.7
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 8.3e-136 488.8 363 70.5
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 7.7e-134 482.3 426 58.5
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.7e-133 481.1 459 55.6
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 1.1e-124 451.8 460 52.2
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 1.5e-121 441.4 295 69.2
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 2.0e-121 441.0 390 56.9
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 3.2e-111 407.1 308 65.6
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.0e-109 402.1 354 58.2
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 1.6e-107 394.8 307 62.9
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 4.6e-94 350.1 261 61.7
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 3.3e-76 290.8 205 67.3
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 4.5e-73 280.4 283 49.1
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 2.4e-66 258.1 177 67.8
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 6.5e-64 250.0 186 65.1
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 2.6e-57 228.0 249 50.2
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 6.5e-56 223.4 155 72.3
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 3.4e-49 201.1 131 74.8
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 2.1e-46 191.8 491 32.4
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 1.3e-43 182.6 123 76.4
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.8e-42 178.7 182 50.5
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 5.5e-31 140.6 158 48.7
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 5.7e-28 130.6 128 57.8
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 1.3e-27 129.4 72 90.3
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 1.9e-23 115.5 273 33.0
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 1.4e-21 109.4 113 51.3
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 7.7e-17 93.6 66 63.6
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.0e-13 83.2 94 44.7
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 1.8e-13 82.4 76 60.5
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 1.8e-13 82.4 58 63.8
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 6.4e-11 73.9 86 45.3
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 3.2e-10 71.6 93 44.1
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 1.2e-09 69.7 35 91.4
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 1.2e-09 69.7 35 91.4
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 1.2e-09 69.7 35 91.4
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 3.3e-07 61.6 52 59.6
AL6G39020 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 9.5e-07 60.1 35 82.9


User provided reference genes

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