Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G03890 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 2.0e-95 352.4 180 100.0
AL6G13470 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 1.2e-84 316.6 180 90.6
CARHR209370 Cardamine hirsuta HOM05D002916 ORTHO05D003152 1.3e-73 280.0 182 82.4
Carub.0006s0284 Capsella rubella HOM05D002916 ORTHO05D003152 1.0e-70 270.4 186 80.1
Thhalv10014801m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 3.7e-65 251.9 180 75.6
Sp6g38840 Schrenkiella parvula HOM05D002916 ORTHO05D003152 3.1e-64 248.8 171 78.9
C03p01810 Brassica napus HOM05D002916 ORTHO05D003152 5.3e-64 248.1 182 75.8
A10p32230 Brassica napus HOM05D002916 ORTHO05D003152 6.9e-64 247.7 175 77.7
BraA10t45266Z Brassica rapa HOM05D002916 ORTHO05D003152 6.9e-64 247.7 175 77.7
C09p73040 Brassica napus HOM05D002916 ORTHO05D003152 4.5e-63 245.0 175 77.1
BolC9t60038H Brassica oleracea HOM05D002916 ORTHO05D003152 1.9e-61 239.6 176 75.6
A03p01480 Brassica napus HOM05D002916 ORTHO05D003152 2.5e-61 239.2 181 72.9
BraA03t09526Z Brassica rapa HOM05D002916 ORTHO05D003152 2.5e-61 239.2 181 72.9
BcaC06g32092 Brassica carinata HOM05D002916 ORTHO05D003152 7.4e-58 227.6 170 74.1
BcaB01g05762 Brassica carinata HOM05D002916 ORTHO05D003152 1.4e-51 206.8 176 66.5
BolC3t12736H Brassica oleracea HOM05D002916 ORTHO05D003152 2.2e-46 189.5 156 69.2
THA.LOC104816397 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 1.6e-44 183.3 179 58.7
Thhalv10021626m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 6.1e-44 181.4 182 60.4
AT3G10120 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 8.0e-44 181.0 183 60.7
AL3G21460 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 1.4e-43 180.3 190 57.9
BolC5t34456H Brassica oleracea HOM05D002916 ORTHO05D003152 4.0e-43 178.7 182 58.2
Sp3g08400 Schrenkiella parvula HOM05D002916 ORTHO05D003152 6.7e-43 177.9 184 58.2
CARHR084600 Cardamine hirsuta HOM05D002916 ORTHO05D003152 1.2e-42 177.2 187 57.2
C05p58000 Brassica napus HOM05D002916 ORTHO05D003152 1.5e-42 176.8 185 57.8
Carub.0008s0814 Capsella rubella HOM05D002916 ORTHO05D003152 3.3e-42 175.6 183 58.5
BcaNung06240 Brassica carinata HOM05D002916 ORTHO05D003152 7.5e-42 174.5 185 57.3
A05p38970 Brassica napus HOM05D002916 ORTHO05D003152 2.8e-41 172.6 184 58.2
BraA05t22688Z Brassica rapa HOM05D002916 ORTHO05D003152 4.8e-41 171.8 184 57.6
BcaNung05911 Brassica carinata HOM05D002916 ORTHO05D003152 1.8e-40 169.9 186 55.9
BolC1t05420H Brassica oleracea HOM05D002916 ORTHO05D003152 7.7e-39 164.5 181 56.4
BcaC09g48115 Brassica carinata HOM05D002916 ORTHO05D003152 1.3e-38 163.7 181 55.8
Aa31LG3G2650 Aethionema arabicum HOM05D002916 ORTHO05D003152 1.7e-38 163.3 203 48.3
BcaB04g21229 Brassica carinata HOM05D002916 ORTHO05D003152 8.5e-38 161.0 183 53.6
A05p13670 Brassica napus HOM05D002916 ORTHO05D003152 6.8e-35 151.4 138 63.0
A01p42040 Brassica napus HOM05D002916 ORTHO05D003152 2.3e-30 136.3 156 55.1
BraA01t04273Z Brassica rapa HOM05D002916 ORTHO05D003152 2.3e-30 136.3 156 55.1
Cpa.g.sc5.15 Carica papaya HOM05D002916 ORTHO05D003152 5.0e-30 135.2 183 44.3
THA.LOC104826943 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 1.1e-29 134.0 178 46.6
Rhsim03G0074900 Rhododendron simsii HOM05D002916 ORTHO05D003152 9.5e-29 131.0 185 43.8
COL.COLO4_29727 Corchorus olitorius HOM05D002916 ORTHO05D003152 1.6e-28 130.2 181 42.5
Prupe.7G109500 Prunus persica HOM05D002916 ORTHO05D003152 1.6e-28 130.2 179 44.7
Duzib128G0442 Durio zibethinus HOM05D002916 ORTHO05D003152 1.2e-26 124.0 179 41.9
Glyma.19G194943 Glycine max HOM05D002916 ORTHO05D003152 1.2e-26 124.0 177 42.9
Duzib093G0112 Durio zibethinus HOM05D002916 ORTHO05D003152 2.0e-26 123.2 179 42.5
Glyma.03G196300 Glycine max HOM05D002916 ORTHO05D003152 2.6e-26 122.9 177 41.8
Manes.09G055000 Manihot esculenta HOM05D002916 ORTHO05D003152 5.7e-26 121.7 177 41.8
Phvul.001G190500 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 9.8e-26 120.9 178 38.8
Thecc.05G089800 Theobroma cacao HOM05D002916 ORTHO05D003152 1.3e-25 120.6 178 40.4
Atru.chr8.1528 Acer truncatum HOM05D002916 ORTHO05D003152 2.2e-25 119.8 177 40.7
Manes.08G025700 Manihot esculenta HOM05D002916 ORTHO05D003152 3.7e-25 119.0 179 40.2
Peaxi162Scf00404g00102 Petunia axillaris HOM05D002916 ORTHO05D003152 4.9e-25 118.6 185 41.1
Atru.chr8.1530 Acer truncatum HOM05D002916 ORTHO05D003152 6.3e-25 118.2 177 40.1
Gohir.D09G135200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 8.3e-25 117.9 181 40.3
Gorai.002G239800 Gossypium raimondii HOM05D002916 ORTHO05D003152 8.3e-25 117.9 181 42.5
TWI53G0172 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 1.4e-24 117.1 182 40.7
VMungo1383G0514 Vigna mungo HOM05D002916 ORTHO05D003152 1.4e-24 117.1 181 40.3
DCAR_013390 Daucus carota HOM05D002916 ORTHO05D003152 1.8e-24 116.7 179 37.4
Gorai.006G155100 Gossypium raimondii HOM05D002916 ORTHO05D003152 2.4e-24 116.3 181 39.8
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 4.1e-24 115.5 177 40.7
Gohir.A07G134900 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.1e-24 115.5 183 38.3
Gohir.A09G139400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.1e-24 115.5 139 45.3
Ca_09009_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 5.4e-24 115.2 183 40.4
Ciclev10012941m.g Citrus clementina HOM05D002916 ORTHO05D003152 7.0e-24 114.8 179 41.9
Gohir.D01G195600 Gossypium hirsutum HOM05D002916 ORTHO05D003152 7.0e-24 114.8 181 42.0
Nn6g34891 Nelumbo nucifera HOM05D002916 ORTHO05D003152 7.0e-24 114.8 179 41.3
TWI74G0225 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 7.0e-24 114.8 182 41.8
FAN02G4366 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.2e-23 114.0 181 40.3
Lalb_Chr01g0018131 Lupinus albus HOM05D002916 ORTHO05D003152 1.2e-23 114.0 185 38.4
MD12G1036700 Malus domestica HOM05D002916 ORTHO05D003152 1.2e-23 114.0 183 42.1
Gohir.A11G003500 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.6e-23 113.6 166 39.8
RcHm_v2.0_Chr3g0473821 Rosa chinensis HOM05D002916 ORTHO05D003152 1.6e-23 113.6 180 39.4
Nn2g14164 Nelumbo nucifera HOM05D002916 ORTHO05D003152 2.7e-23 112.8 179 38.0
PGSC0003DMG400008880 Solanum tuberosum HOM05D002916 ORTHO05D003152 3.5e-23 112.5 196 37.2
FvH4_6g18810 Fragaria vesca HOM05D002916 ORTHO05D003152 7.8e-23 111.3 181 40.3
FAN14G1204 Fragaria x ananassa HOM05D002916 ORTHO05D003152 7.8e-23 111.3 181 40.3
Gohir.A01G206200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 7.8e-23 111.3 183 40.4
Glyma.10G072400 Glycine max HOM05D002916 ORTHO05D003152 1.0e-22 110.9 186 39.8
Gohir.A05G000100 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.0e-22 110.9 183 37.7
Glyma.13G153800 Glycine max HOM05D002916 ORTHO05D003152 2.3e-22 109.8 182 40.1
Aqoxy4G02773 Aquilegia oxysepala HOM05D002916 ORTHO05D003152 2.9e-22 109.4 178 38.8
Solyc09g009810.1 Solanum lycopersicum HOM05D002916 ORTHO05D003152 6.6e-22 108.2 195 36.4
CANSAT64G0492 Cannabis sativa HOM05D002916 ORTHO05D003152 1.1e-21 107.5 196 39.8
QL05p034193 Quercus lobata HOM05D002916 ORTHO05D003152 1.1e-21 107.5 179 40.8
FAN05G4254 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.9e-21 106.7 180 38.3
FAN05G3486 Fragaria x ananassa HOM05D002916 ORTHO05D003152 2.5e-21 106.3 180 38.3
Ciclev10013433m.g Citrus clementina HOM05D002916 ORTHO05D003152 3.3e-21 105.9 182 38.5
Potri.006G213100 Populus trichocarpa HOM05D002916 ORTHO05D003152 3.3e-21 105.9 183 39.3
DCAR_013389 Daucus carota HOM05D002916 ORTHO05D003152 5.6e-21 105.1 179 34.6
Oeu047865.1 Olea europaea HOM05D002916 ORTHO05D003152 7.3e-21 104.8 176 35.2
PGR142G0380 Punica granatum HOM05D002916 ORTHO05D003152 7.3e-21 104.8 198 36.4
Sed0018474 Sechium edule HOM05D002916 ORTHO05D003152 1.2e-20 104.0 181 38.1
BolC6t35258H Brassica oleracea HOM05D002916 ORTHO05D003152 2.1e-20 103.2 89 61.8
Eucgr.K02033 Eucalyptus grandis HOM05D002916 ORTHO05D003152 2.1e-20 103.2 189 36.0
Potri.016G079700 Populus trichocarpa HOM05D002916 ORTHO05D003152 2.1e-20 103.2 177 39.0
Gohir.A04G062400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.8e-20 102.8 182 37.9
DCAR_013392 Daucus carota HOM05D002916 ORTHO05D003152 4.7e-20 102.1 179 34.6
Gorai.009G402300 Gossypium raimondii HOM05D002916 ORTHO05D003152 4.7e-20 102.1 179 38.0
Gohir.D04G099400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 6.1e-20 101.7 182 39.0
DCAR_013391 Daucus carota HOM05D002916 ORTHO05D003152 8.0e-20 101.3 179 33.0
Lj1g0017693 Lotus japonicus HOM05D002916 ORTHO05D003152 1.0e-19 100.9 187 38.5
DCAR_007755 Daucus carota HOM05D002916 ORTHO05D003152 8.9e-19 97.8 181 34.3
Oeu056929.1 Olea europaea HOM05D002916 ORTHO05D003152 8.9e-19 97.8 178 36.0
Sabra16G0085600 Salix brachista HOM05D002916 ORTHO05D003152 1.2e-18 97.4 178 36.5
Sabra16G0087700 Salix brachista HOM05D002916 ORTHO05D003152 1.2e-18 97.4 178 36.5
CiPaw.01G252200 Carya illinoinensis HOM05D002916 ORTHO05D003152 1.5e-18 97.1 181 36.5
MD14G1023400 Malus domestica HOM05D002916 ORTHO05D003152 1.5e-18 97.1 183 38.8
C06p01440 Brassica napus HOM05D002916 ORTHO05D003152 7.5e-18 94.7 83 60.2
Actinidia05426 Actinidia chinensis HOM05D002916 ORTHO05D003152 9.8e-18 94.4 181 35.9
Cfa001906 Carpinus fangiana HOM05D002916 ORTHO05D003152 1.3e-17 94.0 182 36.8
MELO3C024547.2 Cucumis melo HOM05D002916 ORTHO05D003152 2.9e-17 92.8 186 34.9
Haze_16636 Corylus avellana HOM05D002916 ORTHO05D003152 3.7e-17 92.4 180 37.2
Sabra06G0164100 Salix brachista HOM05D002916 ORTHO05D003152 3.7e-17 92.4 143 42.7
AUR62006186 Chenopodium quinoa HOM05D002916 ORTHO05D003152 8.3e-17 91.3 176 32.4
Haze_16634 Corylus avellana HOM05D002916 ORTHO05D003152 8.3e-17 91.3 180 36.7
DCAR_009166 Daucus carota HOM05D002916 ORTHO05D003152 8.3e-17 91.3 180 33.3
Hma1.2p1_0084F.1_g043850 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 8.3e-17 91.3 145 39.3
Hma1.2p1_0820F.1_g223855 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 8.3e-17 91.3 145 39.3
PSO339G4347 Papaver somniferum HOM05D002916 ORTHO05D003152 1.1e-16 90.9 185 31.9
CsaV3_6G040690 Cucumis sativus L. HOM05D002916 ORTHO05D003152 1.4e-16 90.5 187 34.2
PGR004G1189 Punica granatum HOM05D002916 ORTHO05D003152 1.4e-16 90.5 180 35.0
BraA05t21437Z Brassica rapa HOM05D002916 ORTHO05D003152 4.1e-16 89.0 78 65.4
AUR62028520 Chenopodium quinoa HOM05D002916 ORTHO05D003152 4.1e-16 89.0 177 33.3
Ah.15g090860 Amaranthus hybridus HOM05D002916 ORTHO05D003152 1.6e-15 87.0 178 33.7
ClCG04G010060 Citrullus lanatus HOM05D002916 ORTHO05D003152 1.6e-15 87.0 180 33.3
Cc06_g05820 Coffea canephora HOM05D002916 ORTHO05D003152 3.5e-15 85.9 179 32.4
Migut.J01032 Erythranthe guttata HOM05D002916 ORTHO05D003152 7.8e-15 84.7 155 35.5
Migut.L01781 Erythranthe guttata HOM05D002916 ORTHO05D003152 1.3e-14 84.0 177 31.6
Actinidia31270 Actinidia chinensis HOM05D002916 ORTHO05D003152 6.6e-14 81.6 172 34.3
MSTRG.26638 Avicennia marina HOM05D002916 ORTHO05D003152 1.1e-13 80.9 180 32.2
BcaC05g24792 Brassica carinata HOM05D002916 ORTHO05D003152 2.5e-13 79.7 65 67.7
SEGI_19412 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 1.2e-12 77.4 190 34.7
Sopen09g004570 Solanum pennellii HOM05D002916 ORTHO05D003152 1.6e-12 77.0 181 32.6
arahy.Tifrunner.gnm1.ann1.1GMW3T Arachis hypogaea HOM05D002916 ORTHO05D003152 2.8e-12 76.3 188 31.9
arahy.Tifrunner.gnm1.ann1.T8X57X Arachis hypogaea HOM05D002916 ORTHO05D003152 2.8e-12 76.3 188 31.9
Lsat_1_v5_gn_5_164861 Lactuca sativa HOM05D002916 ORTHO05D003152 4.7e-12 75.5 181 31.5
BcaC08g42908 Brassica carinata HOM05D002916 ORTHO05D003152 8.0e-12 74.7 53 67.9
Prupe.2G317800 Prunus persica HOM05D002916 ORTHO05D003152 3.1e-11 72.8 180 31.7
ClCG01G000110 Citrullus lanatus HOM05D002916 ORTHO05D003152 6.8e-11 71.6 170 31.8
SEGI_19965 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 6.8e-11 71.6 186 32.3
Sed0016396 Sechium edule HOM05D002916 ORTHO05D003152 1.2e-10 70.9 169 31.4
Nitab4.5_0003610g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 1.5e-10 70.5 175 32.6
Haze_00282 Corylus avellana HOM05D002916 ORTHO05D003152 9.8e-10 67.8 190 30.0
Duzib084G1372 Durio zibethinus HOM05D002916 ORTHO05D003152 2.9e-09 66.2 168 31.5
Nitab4.5_0000794g0180 Nicotiana tabacum HOM05D002916 ORTHO05D003152 4.9e-09 65.5 59 45.8
BolC3t19576H Brassica oleracea HOM05D002916 ORTHO05D003152 6.4e-09 65.1 46 73.9
Hma1.2p1_0094F.1_g047290 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 8.3e-09 64.7 197 29.4
MBI04_g15577_MAGBIO Magnolia biondii HOM05D002916 ORTHO05D003152 8.3e-09 64.7 183 26.2
Sabra12G0011500 Salix brachista HOM05D002916 ORTHO05D003152 8.3e-09 64.7 193 28.5
SGA_v2.0_scaffold184G39965 Striga asiatica HOM05D002916 ORTHO05D003152 8.3e-09 64.7 120 36.7
ATR0078G023 Amborella trichopoda HOM05D002916 ORTHO05D003152 1.1e-08 64.3 188 29.8
QL09p007312 Quercus lobata HOM05D002916 ORTHO05D003152 1.9e-08 63.5 185 30.3
CANSAT21G0001 Cannabis sativa HOM05D002916 ORTHO05D003152 2.4e-08 63.2 177 28.2
Gohir.D12G247400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.2e-08 62.8 183 30.1
Nitab4.5_0001712g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 3.2e-08 62.8 129 34.1
Glyma.06G135000 Glycine max HOM05D002916 ORTHO05D003152 4.1e-08 62.4 174 26.4
CiPaw.06G042000 Carya illinoinensis HOM05D002916 ORTHO05D003152 7.0e-08 61.6 190 27.9
Thecc.03G207400 Theobroma cacao HOM05D002916 ORTHO05D003152 7.0e-08 61.6 180 31.1
PSO384G2526 Papaver somniferum HOM05D002916 ORTHO05D003152 9.2e-08 61.2 182 26.4
Phvul.009G046400 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 9.2e-08 61.2 175 27.4
Psat5g073040 Pisum sativum HOM05D002916 ORTHO05D003152 9.2e-08 61.2 189 28.6
Cfa016172 Carpinus fangiana HOM05D002916 ORTHO05D003152 1.2e-07 60.8 167 29.9
Gorai.008G265400 Gossypium raimondii HOM05D002916 ORTHO05D003152 1.2e-07 60.8 168 30.4
TAR623G0367 Trochodendron aralioides HOM05D002916 ORTHO05D003152 1.2e-07 60.8 130 34.6
CSS0010688 Camellia sinensis var. sinensis HOM05D002916 ORTHO05D003152 1.6e-07 60.5 131 38.2
Dinv29219 Davidia involucrata HOM05D002916 ORTHO05D003152 1.6e-07 60.5 180 28.3
Glyma.04G229700 Glycine max HOM05D002916 ORTHO05D003152 1.6e-07 60.5 176 23.9
DCAR_008976 Daucus carota HOM05D002916 ORTHO05D003152 2.7e-07 59.7 191 27.2
Potri.012G022300 Populus trichocarpa HOM05D002916 ORTHO05D003152 2.7e-07 59.7 181 28.7
Medtr7g104680 Medicago truncatula HOM05D002916 ORTHO05D003152 3.5e-07 59.3 184 28.8
CsaV3_5G000050 Cucumis sativus L. HOM05D002916 ORTHO05D003152 4.6e-07 58.9 170 28.2
TPR.G23310 Trifolium pratense HOM05D002916 ORTHO05D003152 7.8e-07 58.2 182 29.7
VMungo1309G2175 Vigna mungo HOM05D002916 ORTHO05D003152 7.8e-07 58.2 177 25.4
Gohir.A12G246700 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.0e-06 57.8 183 29.0
Atru.chr12.2401 Acer truncatum HOM05D002916 ORTHO05D003152 1.7e-06 57.0 179 26.3
DCAR_020363 Daucus carota HOM05D002916 ORTHO05D003152 2.3e-06 56.6 198 26.3
SalBow4G3036 Salvia bowleyana HOM05D002916 ORTHO05D003152 2.3e-06 56.6 119 36.1
Manes.01G042300 Manihot esculenta HOM05D002916 ORTHO05D003152 3.0e-06 56.2 163 28.8
QL02p027552 Quercus lobata HOM05D002916 ORTHO05D003152 3.0e-06 56.2 172 28.5
MELO3C005922.2 Cucumis melo HOM05D002916 ORTHO05D003152 3.9e-06 55.8 169 28.4
Rhsim03G0214600 Rhododendron simsii HOM05D001023 ORTHO05D000912 5.0e-06 55.5 180 27.2
THA.LOC104809298 Tarenaya hassleriana HOM05D002255 ORTHO05D002288 5.0e-06 55.5 75 45.3
Ca_16766_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 6.6e-06 55.1 195 28.7
COL.COLO4_14359 Corchorus olitorius HOM05D002916 ORTHO05D003152 6.6e-06 55.1 188 28.2


User provided reference genes

Program Settings