Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.0e-151 540.0 279 100.0
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 2.4e-87 326.2 266 69.5
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.5e-81 307.0 284 63.7
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 4.1e-79 298.9 287 61.0
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 2.1e-75 286.6 247 65.2
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 3.9e-74 282.3 246 64.2
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 2.8e-72 276.2 246 63.4
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 8.2e-72 274.6 291 57.4
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 8.2e-72 274.6 291 57.4
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 2.4e-71 273.1 247 62.8
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 2.4e-71 273.1 291 56.7
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 2.4e-71 273.1 291 56.7
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 2.4e-71 273.1 291 56.7
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 4.4e-65 252.3 271 54.6
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 1.8e-63 246.9 252 59.1
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 7.0e-63 245.0 291 53.3
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.3e-57 226.1 279 53.8
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 3.5e-54 216.1 245 51.0
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 5.9e-54 215.3 246 51.6
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 1.5e-52 210.7 245 52.2
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 2.5e-52 209.9 231 58.0
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 3.6e-51 206.1 246 51.6
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 3.0e-50 203.0 246 51.2
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 1.2e-49 201.1 212 58.0
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 1.2e-49 201.1 245 49.0
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 5.7e-49 198.7 245 50.6
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.7e-48 197.2 237 47.3
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 1.7e-48 197.2 245 49.4
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 2.2e-48 196.8 241 50.2
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 2.8e-48 196.4 246 49.2
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 2.8e-48 196.4 248 48.8
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 3.7e-48 196.1 244 49.6
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 4.8e-48 195.7 235 46.4
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 4.8e-48 195.7 248 49.6
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 1.4e-47 194.1 242 49.6
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.4e-47 194.1 244 47.5
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.8e-47 193.7 244 48.0
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.8e-47 193.7 244 48.0
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 2.4e-47 193.4 248 46.0
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 3.1e-47 193.0 246 49.2
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 5.4e-47 192.2 207 55.1
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 9.1e-47 191.4 257 46.3
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.2e-46 191.0 228 50.4
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.2e-46 191.0 244 47.1
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 1.6e-46 190.7 240 50.0
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 2.0e-46 190.3 247 46.2
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 2.7e-46 189.9 238 49.2
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.5e-46 189.5 244 47.1
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 3.5e-46 189.5 248 46.8
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 4.5e-46 189.1 244 46.7
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 4.5e-46 189.1 248 46.4
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.7e-46 188.3 132 68.2
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 1.3e-45 187.6 245 46.9
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 2.3e-45 186.8 245 47.8
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 2.3e-45 186.8 241 44.8
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 3.8e-45 186.0 245 48.2
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 5.0e-45 185.7 241 46.5
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 6.5e-45 185.3 247 46.6
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.1e-44 184.5 247 46.6
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.1e-44 184.5 224 48.7
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.1e-44 184.5 265 45.3
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 1.5e-44 184.1 239 48.1
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 1.5e-44 184.1 243 49.4
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 1.9e-44 183.7 248 47.2
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 4.2e-44 182.6 249 47.4
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 4.2e-44 182.6 247 47.4
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 4.2e-44 182.6 247 47.4
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 9.5e-44 181.4 247 42.9
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 9.5e-44 181.4 255 45.5
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 1.2e-43 181.0 246 47.2
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 1.2e-43 181.0 141 63.1
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 1.6e-43 180.6 240 44.6
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 1.6e-43 180.6 252 45.2
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 1.6e-43 180.6 240 43.3
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 1.6e-43 180.6 242 47.5
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 2.1e-43 180.3 250 46.4
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.6e-43 179.5 244 47.5
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 3.6e-43 179.5 140 62.9
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 4.7e-43 179.1 222 53.6
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 4.7e-43 179.1 247 47.4
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 8.0e-43 178.3 240 45.0
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 8.0e-43 178.3 245 48.6
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 1.0e-42 177.9 122 70.5
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.4e-42 177.6 240 47.1
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 1.4e-42 177.6 251 43.0
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 1.8e-42 177.2 245 45.7
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 3.0e-42 176.4 246 48.0
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 3.0e-42 176.4 242 48.8
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 6.8e-42 175.3 244 47.5
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 8.8e-42 174.9 248 44.4
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 8.8e-42 174.9 198 52.5
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.2e-41 174.5 154 61.0
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.5e-41 174.1 154 61.0
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 3.4e-41 172.9 140 64.3
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 5.7e-41 172.2 130 66.2
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 9.8e-41 171.4 131 62.6
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 1.7e-40 170.6 245 44.1
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 2.2e-40 170.2 134 61.9
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 8.3e-40 168.3 185 50.8
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 5.4e-39 165.6 246 43.9
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 1.6e-38 164.1 270 41.5
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 1.7e-37 160.6 245 42.4
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 1.7e-37 160.6 243 43.6
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 2.9e-37 159.8 245 42.9
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 5.6e-36 155.6 144 52.1
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.6e-35 154.1 229 46.3
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.1e-35 153.7 110 68.2
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 2.8e-35 153.3 233 44.2
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 6.1e-35 152.1 144 54.2
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 3.0e-34 149.8 148 52.7
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 4.9e-32 142.5 264 38.3
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 6.4e-32 142.1 264 39.0
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 8.3e-32 141.7 139 48.2
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 1.1e-31 141.4 264 38.3
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 3.2e-31 139.8 269 38.7
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 4.1e-31 139.4 294 39.5
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 7.0e-31 138.7 151 57.6
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 2.0e-30 137.1 197 49.2
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 1.1e-28 131.3 140 48.6
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 1.9e-28 130.6 92 73.9
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 3.3e-28 129.8 143 48.3
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 4.3e-28 129.4 91 68.1
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 1.6e-27 127.5 140 45.0
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.1e-27 127.1 208 43.8
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.9e-24 116.7 103 63.1
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 4.1e-23 112.8 140 50.0
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 4.1e-23 112.8 140 50.0
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.5e-22 109.8 178 44.4
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 4.3e-20 102.8 247 34.4
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.3e-20 102.8 132 45.5
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 2.1e-19 100.5 121 47.1
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 1.4e-18 97.8 135 47.4
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-18 97.1 125 43.2
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 3.1e-18 96.7 128 44.5
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 2.0e-17 94.0 58 74.1
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 6.2e-11 72.4 141 34.8
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 3.4e-09 66.6 49 67.3
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 1.7e-08 64.3 138 29.0
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 1.7e-08 64.3 159 34.6


User provided reference genes

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