Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 0.0e+00 1145.2 600 100.0
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 0.0e+00 1097.0 600 95.8
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 8.2e-295 1016.5 603 89.6
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 7.7e-293 1010.0 600 88.2
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 4.1e-286 987.6 609 85.7
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 6.5e-284 980.3 599 85.8
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 6.5e-284 980.3 600 85.8
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 7.2e-283 976.9 599 85.5
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 9.4e-283 976.5 599 86.1
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 1.2e-282 976.1 599 86.1
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 6.3e-271 937.2 600 81.5
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 4.3e-235 818.1 591 74.6
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 2.1e-221 772.7 519 75.7
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.5e-219 765.8 492 76.6
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 7.3e-219 764.2 492 76.4
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 2.8e-218 762.3 484 77.5
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 2.8e-218 762.3 492 76.4
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 2.8e-218 762.3 489 76.9
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 3.6e-218 761.9 484 77.3
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 8.1e-218 760.8 489 76.3
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 1.1e-217 760.4 510 73.9
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 1.1e-217 760.4 498 75.3
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 1.4e-217 760.0 484 76.9
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 1.8e-217 759.6 495 75.4
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 4.0e-217 758.4 554 69.9
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 6.9e-217 757.7 484 76.7
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 2.0e-216 756.1 492 75.0
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 5.8e-216 754.6 491 76.0
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 9.9e-216 753.8 499 74.9
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 1.3e-215 753.4 508 72.8
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 2.9e-215 752.3 484 76.7
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 3.8e-215 751.9 482 75.3
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 3.8e-215 751.9 558 68.8
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 3.8e-215 751.9 591 66.8
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.1e-214 750.4 499 74.7
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 1.1e-214 750.4 510 73.7
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 1.9e-214 749.6 497 75.1
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 3.2e-214 748.8 482 77.4
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 5.4e-214 748.0 480 75.2
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 5.4e-214 748.0 484 76.4
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 9.3e-214 747.3 503 73.4
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 2.7e-213 745.7 491 74.9
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 4.6e-213 745.0 492 74.8
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.0e-212 743.8 492 74.4
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 1.0e-212 743.8 505 73.1
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 1.3e-212 743.4 488 74.2
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 1.8e-212 743.0 481 76.3
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 2.3e-212 742.7 492 74.4
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 3.0e-212 742.3 489 75.5
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 3.0e-212 742.3 482 75.5
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 3.9e-212 741.9 539 69.8
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 6.7e-212 741.1 512 72.9
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 1.1e-211 740.3 561 68.8
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 1.1e-211 740.3 504 73.4
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 4.3e-211 738.4 504 73.0
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 7.4e-211 737.6 483 74.9
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 7.4e-211 737.6 483 74.9
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 9.6e-211 737.3 482 75.3
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 4.8e-210 734.9 469 77.0
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 4.8e-210 734.9 473 76.5
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 6.2e-210 734.6 498 72.7
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 8.1e-210 734.2 484 75.0
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.1e-209 733.8 491 73.7
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 1.4e-209 733.4 486 72.6
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 2.4e-209 732.6 493 72.4
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 3.1e-209 732.3 492 73.0
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 4.0e-209 731.9 490 72.4
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 5.3e-209 731.5 490 72.7
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 6.9e-209 731.1 482 75.7
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 1.2e-208 730.3 499 72.5
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 7.6e-208 727.6 471 75.4
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 2.2e-207 726.1 487 72.5
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 4.9e-207 724.9 490 72.9
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 1.1e-206 723.8 492 73.0
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 1.2e-205 720.3 475 74.1
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 1.3e-204 716.8 440 80.0
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 5.1e-204 714.9 506 70.2
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 2.5e-203 712.6 475 74.5
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 9.6e-203 710.7 484 72.3
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 4.8e-202 708.4 528 66.9
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 8.2e-202 707.6 487 72.5
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 3.1e-201 705.7 518 68.1
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.2e-200 703.7 476 72.5
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 2.0e-200 703.0 476 72.3
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 2.6e-200 702.6 476 71.0
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 3.4e-200 702.2 441 77.3
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 6.5e-199 698.0 479 71.2
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 5.5e-198 694.9 517 67.5
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 7.1e-198 694.5 521 66.8
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 7.1e-198 694.5 475 70.9
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.2e-197 693.7 495 68.7
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.6e-197 693.3 447 77.4
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.7e-197 692.6 492 69.1
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.0e-196 690.6 495 68.7
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 1.3e-196 690.3 467 71.5
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 2.4e-193 679.5 501 67.3
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.0e-191 674.1 438 76.0
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.4e-188 663.7 410 78.3
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 7.4e-187 657.9 482 69.5
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 3.0e-180 636.0 489 62.6
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 9.1e-177 624.4 472 63.3
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 1.5e-176 623.6 469 64.4
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.3e-175 620.5 483 62.9
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 2.2e-175 619.8 488 65.0
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 5.0e-175 618.6 483 62.3
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.1e-174 617.5 483 62.5
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 2.3e-172 609.8 460 65.0
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 5.2e-172 608.6 470 67.0
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 1.3e-170 604.0 390 76.9
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 2.6e-168 596.3 503 63.0
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 1.1e-166 590.9 436 69.5
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 4.0e-164 582.4 479 61.6
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 5.9e-160 568.5 476 58.4
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 1.5e-158 563.9 474 56.1
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 5.7e-155 552.0 471 57.7
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 3.1e-153 546.2 474 58.9
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.4e-140 504.2 436 62.2
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 2.6e-139 500.0 432 63.2
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 2.6e-139 500.0 474 52.7
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 3.6e-125 453.0 316 71.5
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 4.9e-122 442.6 321 67.9
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 2.8e-117 426.8 488 46.3
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 2.8e-117 426.8 491 46.4
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 3.0e-71 273.9 212 66.5
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 3.0e-63 247.3 474 32.9
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 1.3e-53 215.3 130 80.0
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 7.5e-38 162.9 98 76.5
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 1.2e-35 155.6 474 25.5
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 3.5e-27 127.5 71 85.9
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 3.1e-23 114.4 80 73.8
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 6.8e-15 86.7 53 75.5
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 1.2e-14 85.9 475 24.4
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 4.4e-14 84.0 425 25.9
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 6.8e-07 60.1 28 96.4


User provided reference genes

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