Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 3.1e-287 991.1 498 100.0
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 1.6e-283 978.8 498 98.8
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 1.1e-279 966.1 499 97.4
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 3.1e-271 937.9 500 94.6
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 3.4e-270 934.5 508 93.1
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 5.8e-270 933.7 500 94.0
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 7.6e-270 933.3 500 94.0
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 1.3e-269 932.6 501 93.6
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 1.6e-267 925.6 501 93.0
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 1.6e-267 925.6 501 93.0
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 2.7e-267 924.9 500 93.2
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 7.8e-267 923.3 498 93.2
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.7e-266 922.2 500 93.0
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 1.5e-265 919.1 499 93.0
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 5.6e-265 917.1 499 92.8
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 2.1e-264 915.2 502 92.4
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 4.8e-264 914.1 499 92.6
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 6.2e-264 913.7 504 91.9
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 2.4e-263 911.8 499 92.2
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 4.0e-263 911.0 502 92.0
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 4.3e-257 891.0 497 89.5
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 3.4e-254 881.3 473 93.9
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.6e-248 862.4 507 84.6
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.3e-242 842.8 495 86.9
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 6.9e-239 830.5 504 82.5
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 6.7e-234 813.9 445 92.4
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 6.7e-226 787.3 503 76.7
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 4.5e-222 774.6 509 75.4
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 1.3e-221 773.1 500 76.4
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 1.7e-221 772.7 509 75.0
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 1.1e-220 770.0 509 75.6
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 9.4e-220 766.9 509 76.8
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 4.7e-219 764.6 507 75.7
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 6.1e-219 764.2 509 75.2
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 8.8e-218 760.4 514 74.1
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 8.8e-218 760.4 508 75.4
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 3.3e-217 758.4 506 74.7
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 9.7e-217 756.9 507 75.0
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 4.8e-216 754.6 508 75.6
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 6.3e-216 754.2 510 73.5
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 1.8e-215 752.7 505 74.1
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 1.7e-213 746.1 508 73.8
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.9e-213 745.3 511 73.0
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 5.0e-213 744.6 510 73.5
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.1e-212 743.4 516 72.7
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 1.5e-212 743.0 508 72.6
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 4.2e-212 741.5 507 73.2
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 7.2e-212 740.7 508 72.8
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 1.4e-210 736.5 506 73.3
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 4.0e-210 734.9 507 72.8
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 6.8e-210 734.2 509 73.7
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 1.2e-209 733.4 509 72.7
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 1.2e-209 733.4 507 72.0
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 3.4e-209 731.9 509 71.7
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 4.4e-209 731.5 514 71.2
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 1.1e-207 726.9 509 70.9
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 1.8e-207 726.1 505 71.5
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 9.1e-207 723.8 504 71.0
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 1.2e-206 723.4 498 71.9
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 2.7e-206 722.2 505 71.3
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 1.7e-205 719.5 508 71.7
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 8.5e-205 717.2 478 75.1
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 3.2e-204 715.3 510 70.4
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 4.2e-204 714.9 513 69.6
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 9.4e-204 713.8 506 70.8
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 2.7e-203 712.2 512 70.3
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.7e-203 712.2 514 69.5
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 2.7e-203 712.2 511 69.7
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 4.7e-203 711.4 505 69.9
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 8.0e-203 710.7 492 71.7
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 1.4e-202 709.9 547 66.9
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 1.4e-202 709.9 512 68.8
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 5.2e-202 708.0 547 66.9
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 8.8e-202 707.2 550 65.8
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.0e-201 706.1 508 71.7
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 3.4e-201 705.3 513 68.0
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.2e-200 702.6 508 71.5
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 4.9e-200 701.4 506 69.0
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 4.9e-200 701.4 517 69.4
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 8.3e-200 700.7 502 69.7
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.4e-199 699.9 514 69.5
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 2.4e-199 699.1 510 68.8
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 5.4e-199 698.0 507 69.0
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 1.2e-198 696.8 513 68.0
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 2.0e-198 696.0 474 74.5
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 2.0e-198 696.0 512 68.2
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 7.7e-198 694.1 474 73.4
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.0e-197 691.4 498 70.3
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 8.6e-197 690.6 498 70.1
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 4.2e-196 688.3 513 67.6
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 7.2e-196 687.6 475 72.4
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 1.4e-194 683.3 509 67.8
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 4.0e-194 681.8 513 67.1
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.2e-193 680.2 501 68.5
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 1.3e-192 676.8 526 63.9
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.9e-192 675.6 603 60.2
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 8.3e-192 674.1 505 67.9
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.6e-190 669.8 508 69.5
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 2.0e-190 669.5 454 74.7
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.5e-190 668.7 508 69.3
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 7.8e-190 667.5 510 66.5
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.3e-189 666.8 502 67.3
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 6.6e-189 664.5 513 66.7
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.6e-187 659.8 534 66.5
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 1.4e-186 656.8 459 71.7
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 3.1e-186 655.6 582 59.8
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 4.0e-186 655.2 494 65.6
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 4.0e-186 655.2 490 67.1
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 6.8e-186 654.4 513 64.1
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 6.8e-186 654.4 499 64.3
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 2.6e-185 652.5 569 61.3
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 7.0e-183 644.4 445 73.0
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.0e-181 640.6 510 65.9
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 1.7e-181 639.8 505 65.5
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 7.3e-180 634.4 509 65.4
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 9.5e-180 634.0 526 63.5
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 1.8e-178 629.8 510 62.5
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 5.2e-178 628.2 508 63.0
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.5e-177 626.7 506 62.6
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 7.5e-177 624.4 530 62.3
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 2.4e-175 619.4 514 63.0
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 9.9e-169 597.4 474 64.8
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 5.1e-157 558.5 404 69.1
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 3.6e-155 552.4 399 69.4
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 1.8e-154 550.1 541 53.2
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 2.7e-150 536.2 533 53.3
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 1.4e-146 523.9 663 47.1
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 3.4e-145 519.2 416 62.5
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 5.8e-145 518.5 492 58.1
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 6.0e-134 481.9 453 58.7
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 3.3e-132 476.1 437 58.6
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 2.5e-124 449.9 337 68.5
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 4.6e-118 429.1 270 79.6
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.3e-112 411.0 273 74.0
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 3.2e-103 379.8 279 69.2
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.5e-87 327.8 243 68.3
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 4.9e-83 312.8 252 61.1
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.7e-81 307.0 211 71.1
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 1.2e-78 298.1 261 58.6
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 3.0e-72 276.9 495 39.8
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 1.2e-68 265.0 217 63.1
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 7.8e-65 252.3 571 31.3
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.5e-55 220.7 388 35.8
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 2.4e-42 177.6 135 63.7
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 6.0e-41 172.9 173 53.8
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 6.6e-40 169.5 106 78.3
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 3.8e-35 153.7 184 42.9
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.1e-30 137.9 121 61.2
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.6e-30 137.1 249 39.0
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.1e-29 135.6 249 38.6
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 9.9e-28 129.0 68 86.8
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.0e-24 119.0 114 50.9
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.5e-23 115.2 63 87.3
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 5.5e-18 96.7 183 28.4
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 1.8e-13 81.6 114 44.7
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 7.6e-12 76.3 48 70.8
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 1.7e-11 75.1 61 63.9
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 3.6e-09 67.4 209 27.3
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 3.9e-08 63.9 127 29.9
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.7e-08 62.8 105 41.9
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 1.1e-07 62.4 80 46.2
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.1e-07 62.4 36 80.6
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.3e-07 60.8 36 75.0
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 4.3e-07 60.5 75 38.7


User provided reference genes

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