Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G03120 Arabidopsis thaliana HOM05D007569 ORTHO05D009268 7.7e-58 226.9 109 100.0
AL6G12400 Arabidopsis lyrata HOM05D007569 ORTHO05D009268 1.0e-33 146.7 76 93.4
Carub.0006s0192 Capsella rubella HOM05D007569 ORTHO05D009268 1.4e-27 126.3 78 82.1
Thhalv10015759m.g Eutrema salsugineum HOM05D007569 ORTHO05D009268 3.1e-27 125.2 76 81.6
CARHR210230 Cardamine hirsuta HOM05D007569 ORTHO05D009268 7.7e-26 120.6 77 80.5
Sp6g39590 Schrenkiella parvula HOM05D007569 ORTHO05D009268 2.3e-25 119.0 78 76.9
BraA02t04745Z Brassica rapa HOM05D007569 ORTHO05D009268 5.5e-24 114.4 78 71.8
BcaB05g21850 Brassica carinata HOM05D007569 ORTHO05D009268 1.6e-23 112.8 76 72.4
BcaC03g13030 Brassica carinata HOM05D007569 ORTHO05D009268 2.1e-23 112.5 77 71.4
C02p00800 Brassica napus HOM05D004310 ORTHO05D009268 3.6e-23 111.7 76 72.4
A03p01020 Brassica napus HOM05D007569 ORTHO05D009268 3.0e-22 108.6 79 72.2
BraA03t09483Z Brassica rapa HOM05D007569 ORTHO05D009268 3.0e-22 108.6 79 72.2
BcaB01g05860 Brassica carinata HOM05D007569 ORTHO05D009268 1.5e-21 106.3 82 69.5
C03p01310 Brassica napus HOM05D007569 ORTHO05D009268 1.5e-21 106.3 82 69.5
BolC3t12690H Brassica oleracea HOM05D007569 ORTHO05D009268 1.5e-21 106.3 82 69.5
BolC2t06078H Brassica oleracea HOM05D004310 ORTHO05D009268 9.8e-21 103.6 86 64.0
Aa31LG1G21950 Aethionema arabicum HOM05D007569 ORTHO05D009268 1.2e-18 96.7 72 65.3
THA.LOC104826977 Tarenaya hassleriana HOM05D007569 ORTHO05D009268 3.6e-15 85.1 73 63.0
CiPaw.09G178900 Carya illinoinensis HOM05D007569 ORTHO05D009268 2.9e-12 75.5 57 63.2
Prupe.6G240500 Prunus persica HOM05D007569 ORTHO05D009268 3.5e-10 68.6 68 51.5
Haze_20627 Corylus avellana HOM05D007569 ORTHO05D009268 7.8e-10 67.4 78 43.6
Cpa.g.sc368.3 Carica papaya HOM05D007569 ORTHO05D009268 1.3e-09 66.6 64 53.1
Thecc.05G055900 Theobroma cacao HOM05D007569 ORTHO05D009268 3.0e-09 65.5 65 50.8
Glyma.13G138100 Glycine max HOM05D007569 ORTHO05D009268 5.0e-09 64.7 78 44.9
Duzib093G0005 Durio zibethinus HOM05D007569 ORTHO05D009268 6.6e-09 64.3 54 53.7
Potri.016G087000 Populus trichocarpa HOM05D007569 ORTHO05D009268 6.6e-09 64.3 64 53.1
COL.COLO4_27060 Corchorus olitorius HOM05D007569 ORTHO05D009268 1.9e-08 62.8 80 42.5
RhsimUnG0115600 Rhododendron simsii HOM05D007569 ORTHO05D009268 1.9e-08 62.8 70 47.1
Ciclev10013224m.g Citrus clementina HOM05D007569 ORTHO05D009268 2.5e-08 62.4 66 51.5
Medtr7g100860 Medicago truncatula HOM05D007569 ORTHO05D009268 3.3e-08 62.0 59 49.2
CiPaw.10G136400 Carya illinoinensis HOM05D007569 ORTHO05D009268 1.2e-07 60.1 62 54.8
CiPaw.10G136600 Carya illinoinensis HOM05D007569 ORTHO05D009268 1.2e-07 60.1 62 54.8
MD04G1102400 Malus domestica HOM05D007569 ORTHO05D009268 1.2e-07 60.1 70 45.7
Manes.08G004500 Manihot esculenta HOM05D007569 ORTHO05D009268 1.2e-07 60.1 78 44.9
Potri.006G130400 Populus trichocarpa HOM05D007569 ORTHO05D009268 1.6e-07 59.7 55 54.5
QL07p045078 Quercus lobata HOM05D007569 ORTHO05D009268 1.6e-07 59.7 67 49.3
Actinidia19698 Actinidia chinensis HOM05D007569 ORTHO05D009268 2.1e-07 59.3 52 51.9
FAN05G3967 Fragaria x ananassa HOM05D007569 ORTHO05D009268 2.1e-07 59.3 75 46.7
RcHm_v2.0_Chr3g0469031 Rosa chinensis HOM05D007569 ORTHO05D009268 2.8e-07 58.9 73 52.1
EL10Ac7g16512 Beta vulgaris HOM05D007569 ORTHO05D009268 3.6e-07 58.5 64 48.4
Gohir.A13G025100 Gossypium hirsutum HOM05D007569 ORTHO05D009268 3.6e-07 58.5 58 48.3
FvH4_6g15530 Fragaria vesca HOM05D007569 ORTHO05D009268 4.7e-07 58.2 81 45.7
FAN14G4266 Fragaria x ananassa HOM05D007569 ORTHO05D009268 4.7e-07 58.2 81 45.7
Sabra16G0093200 Salix brachista HOM05D007569 ORTHO05D009268 4.7e-07 58.2 63 54.0
Cc06_g03690 Coffea canephora HOM05D007569 ORTHO05D009268 6.2e-07 57.8 71 38.0
Gorai.013G026900 Gossypium raimondii HOM05D007569 ORTHO05D009268 6.2e-07 57.8 58 46.6
Gohir.A01G216400 Gossypium hirsutum HOM05D007569 ORTHO05D009268 8.0e-07 57.4 64 48.4
Gorai.002G249500 Gossypium raimondii HOM05D007569 ORTHO05D009268 8.0e-07 57.4 64 48.4
ECA248G1179 Erigeron canadensis HOM05D007569 ORTHO05D009268 1.1e-06 57.0 59 50.8
Gohir.D13G023800 Gossypium hirsutum HOM05D007569 ORTHO05D009268 1.1e-06 57.0 58 46.6
Lsat_1_v5_gn_1_54200 Lactuca sativa HOM05D007569 ORTHO05D009268 1.1e-06 57.0 61 50.8
Psat3g044160 Pisum sativum HOM05D007569 ORTHO05D009268 1.1e-06 57.0 51 54.9
CSS0032625 Camellia sinensis var. sinensis HOM05D007569 ORTHO05D009268 1.8e-06 56.2 70 44.3
Dinv35729 Davidia involucrata HOM05D007569 ORTHO05D009268 1.8e-06 56.2 59 49.2
CANSAT80G1933 Cannabis sativa HOM05D007569 ORTHO05D009268 3.1e-06 55.5 55 54.5
Gohir.D01G205200 Gossypium hirsutum HOM05D007569 ORTHO05D009268 3.1e-06 55.5 64 48.4
Glyma.10G050600 Glycine max HOM05D007569 ORTHO05D009268 4.0e-06 55.1 79 44.3
Lj5g0021553 Lotus japonicus HOM05D007569 ORTHO05D009268 4.0e-06 55.1 81 43.2
Lalb_Chr25g0289201 Lupinus albus HOM05D007569 ORTHO05D009268 4.0e-06 55.1 50 58.0


User provided reference genes

Program Settings